Wall clock time and date at job start Mon Mar 30 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37788 * 120.11543 * 2 1 4 4 C 1.38784 * 120.66778 * 179.97438 * 3 2 1 5 5 C 1.36659 * 120.52985 * 359.97105 * 4 3 2 6 6 C 1.50703 * 120.11616 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47372 * 265.00443 * 6 5 4 8 8 C 1.50695 * 109.46954 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00439 * 359.72104 * 8 7 6 10 10 C 1.37884 * 119.99683 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00221 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99754 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47268 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47296 * 120.00131 * 12 10 8 15 15 H 1.48500 * 109.46732 * 239.99857 * 12 10 8 16 16 C 1.39587 * 119.76537 * 0.28590 * 5 4 3 17 17 C 1.46492 * 134.03897 * 179.74674 * 16 5 4 18 18 C 1.34234 * 106.99973 * 179.97438 * 17 16 5 19 19 N 1.36843 * 109.93892 * 359.46770 * 18 17 16 20 20 C 1.46494 * 125.06139 * 179.97438 * 19 18 17 21 21 C 1.37693 * 109.86912 * 0.64996 * 19 18 17 22 22 H 1.08992 * 109.47083 * 97.04982 * 1 2 3 23 23 H 1.09004 * 109.47112 * 217.05327 * 1 2 3 24 24 H 1.09004 * 109.46627 * 337.04790 * 1 2 3 25 25 H 1.08003 * 119.66608 * 359.95542 * 3 2 1 26 26 H 1.08010 * 119.73598 * 180.02562 * 4 3 2 27 27 H 1.09003 * 109.46973 * 145.00641 * 6 5 4 28 28 H 1.08999 * 109.47189 * 25.00823 * 6 5 4 29 29 H 1.08995 * 109.47060 * 59.99897 * 7 6 5 30 30 H 1.09007 * 109.47121 * 300.00033 * 7 6 5 31 31 H 0.97000 * 120.00024 * 179.97438 * 11 10 8 32 32 H 1.07996 * 126.49883 * 0.02562 * 17 16 5 33 33 H 1.08002 * 125.03148 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47172 * 263.72878 * 20 19 18 35 35 H 1.08992 * 109.47466 * 23.73401 * 20 19 18 36 36 H 1.09003 * 109.46962 * 143.73611 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 0.0005 5 6 4.2916 0.0349 0.0017 6 6 5.7985 0.0603 0.0017 7 6 6.3106 -0.0581 -1.4353 8 6 7.8173 -0.0333 -1.4351 9 1 8.3558 0.0623 -0.5038 10 6 8.5084 -0.1264 -2.6246 11 7 7.8527 -0.2373 -3.7591 12 14 10.3762 -0.0949 -2.6245 13 1 10.8690 0.0367 -1.2299 14 1 10.8926 -1.3555 -3.2155 15 1 10.8518 1.0597 -3.4281 16 6 3.6117 -1.1842 -0.0038 17 6 4.0353 -2.5865 -0.0090 18 6 2.9200 -3.3334 -0.0123 19 7 1.8165 -2.5243 0.0023 20 6 0.4288 -2.9936 0.0030 21 6 2.2047 -1.2032 0.0011 22 1 -0.3633 -0.1261 -1.0198 23 1 -0.3633 -0.8202 0.6192 24 1 -0.3633 0.9464 0.4008 25 1 1.6548 2.1252 -0.0007 26 1 4.1128 2.1483 0.0009 27 1 6.1759 -0.7748 0.5918 28 1 6.1460 0.9980 0.4352 29 1 5.9331 0.7769 -2.0254 30 1 5.9630 -0.9959 -1.8688 31 1 8.3389 -0.3023 -4.5959 32 1 5.0521 -2.9503 -0.0093 33 1 2.8969 -4.4131 -0.0161 34 1 0.0440 -2.9915 -1.0168 35 1 0.3878 -4.0060 0.4047 36 1 -0.1781 -2.3324 0.6216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:04 Heat of formation + Delta-G solvation = 45.457820 kcal Electronic energy + Delta-G solvation = -16862.079620 eV Core-core repulsion = 14311.108340 eV Total energy + Delta-G solvation = -2550.971280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.01022 -37.09416 -34.55990 -32.99159 -31.52793 -29.99171 -28.48944 -27.30048 -25.54216 -23.97813 -21.76923 -21.30136 -20.70777 -18.72850 -16.44239 -16.15918 -15.84342 -15.27303 -14.64523 -14.39353 -14.25401 -13.52276 -13.27134 -12.94077 -12.58572 -12.49810 -12.35808 -12.21810 -11.95521 -11.63620 -11.22708 -10.96000 -10.88047 -10.83740 -10.41795 -10.24009 -9.71574 -9.48590 -8.99303 -8.75996 -8.27000 -7.74567 -7.00150 -5.91646 -3.94158 1.57874 2.11327 3.06940 3.10498 3.35831 3.43050 3.47527 4.34643 4.53155 4.73079 4.98107 5.04451 5.15155 5.21041 5.31781 5.41046 5.43710 5.60787 5.67766 5.75811 5.94654 6.04270 6.11559 6.26215 6.35678 6.51741 6.64031 6.81360 6.97020 7.09050 7.15172 7.26814 7.38772 7.63401 7.69774 7.79728 7.96761 8.10666 8.50692 9.13603 9.69189 11.19384 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.005464 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.946053 B = 5122.771826 C = 5582.954949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.007 4.007 6 C -0.078 4.078 7 C 0.032 3.968 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.056 3.944 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.104 4.104 17 C -0.180 4.180 18 C 0.027 3.973 19 N -0.493 5.493 20 C 0.076 3.924 21 C 0.101 3.899 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.019 0.981 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 -3.724 8.350 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.176 4.176 5 C -0.008 4.008 6 C -0.115 4.115 7 C -0.005 4.005 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.108 4.108 17 C -0.205 4.205 18 C -0.096 4.096 19 N -0.178 5.178 20 C -0.066 4.066 21 C -0.004 4.004 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.025 -3.899 8.172 18.406 hybrid contribution 0.997 -0.087 -0.296 1.043 sum -15.028 -3.986 7.876 17.429 Atomic orbital electron populations 1.20839 0.92195 1.02093 1.01437 1.18629 0.94674 0.90317 1.09142 1.20615 0.94140 0.95852 1.00583 1.20509 0.93462 0.97797 1.05842 1.19558 0.97075 0.90649 0.93483 1.20791 0.88022 1.01039 1.01670 1.19045 0.95119 0.97525 0.88829 1.21320 0.91821 1.49767 0.92738 0.92602 1.25020 0.98257 0.95478 0.95677 1.69991 1.35179 1.50646 0.97608 0.86569 0.86084 0.77512 0.78036 1.19721 1.21081 1.21093 1.19051 0.91309 0.93570 1.06918 1.21794 0.98124 0.91047 1.09507 1.21665 0.85177 0.96015 1.06725 1.43651 1.05600 1.03994 1.64542 1.22078 0.81112 1.00795 1.02619 1.18030 0.93648 0.84055 1.04686 0.92090 0.92188 0.91805 0.86476 0.86245 0.92252 0.92417 0.96609 0.96241 0.93156 0.83443 0.82029 0.91866 0.90369 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.30 36.01 0.33 -0.89 16 2 C -0.12 -1.94 5.89 -104.47 -0.62 -2.56 16 3 C -0.09 -1.48 9.64 -39.54 -0.38 -1.86 16 4 C -0.16 -2.88 9.60 -39.95 -0.38 -3.26 16 5 C -0.01 -0.15 5.13 -104.69 -0.54 -0.68 16 6 C -0.08 -1.74 5.20 -27.88 -0.14 -1.88 16 7 C 0.03 0.87 4.96 -27.88 -0.14 0.73 16 8 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 9 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 12 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 C -0.10 -2.05 6.15 -105.14 -0.65 -2.69 16 17 C -0.18 -3.20 10.88 -37.67 -0.41 -3.61 16 18 C 0.03 0.40 11.27 -16.73 -0.19 0.21 16 19 N -0.49 -7.10 3.18 -121.80 -0.39 -7.48 16 20 C 0.08 0.72 10.31 59.84 0.62 1.33 16 21 C 0.10 1.74 6.74 -83.98 -0.57 1.18 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.58 5.08 -51.93 -0.26 0.32 16 24 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 25 H 0.12 1.51 8.05 -52.48 -0.42 1.09 16 26 H 0.12 2.04 8.05 -52.48 -0.42 1.62 16 27 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 28 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.15 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 36 H 0.08 0.69 5.18 -51.93 -0.27 0.42 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -33.43 300.29 -8.75 -42.18 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.13 Total: -1.52 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.47 Total: -27.79 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.35 Total: -34.41 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.43 -8.75 -42.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.635 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds