Wall clock time and date at job start Mon Mar 30 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36665 * 119.73054 * 2 1 4 4 C 1.39586 * 119.76189 * 179.97438 * 3 2 1 5 5 C 1.46494 * 134.03702 * 180.02562 * 4 3 2 6 6 C 1.34233 * 106.99968 * 179.73684 * 5 4 3 7 7 C 1.50701 * 125.02978 * 180.24855 * 6 5 4 8 8 C 1.50697 * 109.47224 * 85.16829 * 7 6 5 9 9 H 1.08009 * 120.00068 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00124 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00005 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 119.99965 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47142 * 89.99614 * 12 10 8 14 14 H 1.48500 * 109.47187 * 209.99715 * 12 10 8 15 15 H 1.48504 * 109.47280 * 329.99728 * 12 10 8 16 16 N 1.36834 * 109.94032 * 0.39402 * 6 5 4 17 17 C 1.46499 * 125.06362 * 179.85156 * 16 6 5 18 18 C 1.37694 * 109.87070 * 359.59473 * 16 6 5 19 19 C 1.39092 * 133.51173 * 180.26635 * 18 16 6 20 20 C 1.50700 * 120.10860 * 359.94671 * 19 18 16 21 21 C 1.37783 * 119.77541 * 179.97438 * 19 18 16 22 22 H 1.09002 * 109.47144 * 90.00711 * 1 2 3 23 23 H 1.09005 * 109.46888 * 209.99962 * 1 2 3 24 24 H 1.08993 * 109.47836 * 330.00261 * 1 2 3 25 25 H 1.07996 * 120.11872 * 359.97438 * 3 2 1 26 26 H 1.08005 * 126.49728 * 359.95226 * 5 4 3 27 27 H 1.09000 * 109.47006 * 205.16603 * 7 6 5 28 28 H 1.09002 * 109.47371 * 325.17151 * 7 6 5 29 29 H 0.97002 * 120.00007 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47391 * 269.69876 * 17 16 6 31 31 H 1.09001 * 109.46813 * 149.69932 * 17 16 6 32 32 H 1.09004 * 109.47041 * 29.70059 * 17 16 6 33 33 H 1.08999 * 109.46747 * 90.00273 * 20 19 18 34 34 H 1.09001 * 109.46959 * 209.99954 * 20 19 18 35 35 H 1.08993 * 109.47570 * 330.00397 * 20 19 18 36 36 H 1.08002 * 119.66414 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1848 1.1868 0.0000 4 6 3.5807 1.1875 0.0005 5 6 4.5984 2.2412 0.0012 6 6 5.7943 1.6317 0.0074 7 6 7.1254 2.3384 0.0156 8 6 7.5049 2.6783 1.4338 9 1 6.8482 2.4092 2.2479 10 6 8.6911 3.3321 1.6922 11 7 9.0225 3.6283 2.9299 12 14 9.8272 3.7969 0.2843 13 1 9.4751 5.1527 -0.2090 14 1 11.2335 3.7935 0.7613 15 1 9.6763 2.8142 -0.8188 16 7 5.6261 0.2737 0.0020 17 6 6.7126 -0.7090 0.0031 18 6 4.2834 -0.0315 0.0010 19 6 3.5732 -1.2274 0.0010 20 6 4.3080 -2.5431 0.0011 21 6 2.1955 -1.2050 0.0004 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5137 25 1 1.6424 2.1206 -0.0004 26 1 4.4202 3.3065 0.0006 27 1 7.8849 1.6876 -0.4177 28 1 7.0541 3.2544 -0.5709 29 1 9.8568 4.0886 3.1117 30 1 6.9828 -0.9531 -1.0242 31 1 6.3846 -1.6125 0.5171 32 1 7.5787 -0.2924 0.5175 33 1 4.4851 -2.8602 1.0288 34 1 3.7082 -3.2943 -0.5128 35 1 5.2622 -2.4263 -0.5126 36 1 1.6458 -2.1347 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260671129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:02 Heat of formation + Delta-G solvation = 43.284495 kcal Electronic energy + Delta-G solvation = -16990.221970 eV Core-core repulsion = 14439.156448 eV Total energy + Delta-G solvation = -2551.065522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89394 -37.32672 -33.78730 -33.08040 -31.87659 -30.61745 -28.21816 -27.29648 -26.26773 -24.44691 -22.88518 -20.47237 -20.18105 -18.89011 -16.90961 -16.37881 -15.43365 -14.92695 -14.64775 -14.23808 -13.62570 -13.51289 -13.27380 -13.04006 -12.93873 -12.77727 -12.34004 -12.17075 -11.91319 -11.83306 -11.80633 -11.47890 -10.90080 -10.73245 -10.62070 -10.44047 -10.12927 -9.95493 -9.45239 -8.91254 -8.68049 -7.38932 -6.92322 -6.16142 -4.17088 1.59225 2.04251 3.21470 3.29609 3.30318 3.38499 3.47783 4.28222 4.32112 4.98229 5.12466 5.15059 5.24473 5.25282 5.41942 5.49791 5.57336 5.66860 5.68957 5.77474 5.77748 5.88597 5.96716 6.03856 6.14276 6.23059 6.38832 6.54143 6.64943 6.77165 6.83091 6.94440 7.06882 7.32708 7.51660 7.57241 7.89490 7.95448 8.40369 8.89552 9.42212 10.96460 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.005952 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.259894 B = 4703.452450 C = 5133.833336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.091 4.091 5 C -0.233 4.233 6 C 0.145 3.855 7 C 0.037 3.963 8 C -0.517 4.517 9 H 0.076 0.924 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.266 1.266 16 N -0.480 5.480 17 C 0.071 3.929 18 C 0.086 3.914 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.117 4.117 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -9.736 -7.539 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.097 4.097 5 C -0.256 4.256 6 C 0.038 3.962 7 C -0.001 4.001 8 C -0.556 4.556 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.533 5.533 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.190 1.190 16 N -0.163 5.163 17 C -0.071 4.071 18 C -0.020 4.020 19 C -0.095 4.095 20 C -0.172 4.172 21 C -0.136 4.136 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.159 0.841 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.839 -9.865 -7.422 15.786 hybrid contribution 0.769 0.332 -0.502 0.977 sum -9.069 -9.533 -7.924 15.360 Atomic orbital electron populations 1.20646 0.91851 1.01979 1.01436 1.19193 0.95339 0.92887 1.04891 1.20020 0.91798 0.97191 1.01062 1.19246 0.92970 0.92737 1.04701 1.21307 0.89685 0.97750 1.16861 1.20916 0.97978 0.80865 0.96422 1.18533 0.87354 0.94913 0.99328 1.20872 1.05721 1.38433 0.90525 0.90620 1.24966 0.97463 0.95029 0.95514 1.69893 1.23919 1.40739 1.18748 0.86836 0.80315 0.79674 0.82875 1.19876 1.21099 1.19046 1.43780 1.03747 1.05819 1.62946 1.22099 0.90634 0.92212 1.02107 1.18058 0.83403 0.94704 1.05795 1.18736 0.93203 0.91960 1.05580 1.20893 1.00114 0.94340 1.01882 1.20346 0.92092 0.97075 1.04123 0.92097 0.92285 0.92113 0.86709 0.84096 0.95465 0.94098 0.92431 0.92182 0.90222 0.88836 0.91655 0.91805 0.91657 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.99 36.01 0.36 -0.77 16 2 C -0.12 -1.81 5.85 -104.99 -0.61 -2.42 16 3 C -0.08 -1.38 9.67 -39.65 -0.38 -1.77 16 4 C -0.09 -1.80 6.37 -105.14 -0.67 -2.47 16 5 C -0.23 -4.92 10.95 -37.67 -0.41 -5.33 16 6 C 0.15 3.19 6.02 -81.77 -0.49 2.70 16 7 C 0.04 0.86 4.04 -29.04 -0.12 0.74 16 8 C -0.52 -14.36 9.65 -34.44 -0.33 -14.70 16 9 H 0.08 2.35 7.98 -52.48 -0.42 1.93 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 12 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 16 N -0.48 -9.45 3.18 -117.19 -0.37 -9.82 16 17 C 0.07 1.14 9.31 59.85 0.56 1.69 16 18 C 0.09 1.65 6.74 -83.98 -0.57 1.08 16 19 C -0.09 -1.48 5.89 -104.47 -0.62 -2.09 16 20 C -0.12 -1.45 8.80 36.01 0.32 -1.13 16 21 C -0.12 -1.72 9.31 -39.55 -0.37 -2.09 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 24 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 25 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 26 H 0.14 2.81 8.06 -52.48 -0.42 2.39 16 27 H 0.03 0.62 6.39 -51.93 -0.33 0.28 16 28 H 0.04 0.94 7.57 -51.93 -0.39 0.54 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.09 5.68 -51.93 -0.30 0.79 16 32 H 0.09 1.61 7.38 -51.93 -0.38 1.23 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.06 0.79 5.51 -51.93 -0.29 0.50 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -31.03 295.09 -8.33 -39.35 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.07 Total: 0.77 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.44 Total: -24.62 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.40 Total: -35.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.03 -8.33 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.637 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds