Wall clock time and date at job start Mon Mar 30 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36665 * 119.73054 * 2 1 4 4 C 1.39586 * 119.76189 * 179.97438 * 3 2 1 5 5 C 1.46494 * 134.03702 * 180.02562 * 4 3 2 6 6 C 1.34233 * 106.99968 * 179.73684 * 5 4 3 7 7 C 1.50701 * 125.02978 * 180.24855 * 6 5 4 8 8 C 1.50697 * 109.47224 * 85.16829 * 7 6 5 9 9 H 1.08009 * 120.00068 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00124 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00005 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 119.99965 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47142 * 89.99614 * 12 10 8 14 14 H 1.48500 * 109.47187 * 209.99715 * 12 10 8 15 15 H 1.48504 * 109.47280 * 329.99728 * 12 10 8 16 16 N 1.36834 * 109.94032 * 0.39402 * 6 5 4 17 17 C 1.46499 * 125.06362 * 179.85156 * 16 6 5 18 18 C 1.37694 * 109.87070 * 359.59473 * 16 6 5 19 19 C 1.39092 * 133.51173 * 180.26635 * 18 16 6 20 20 C 1.50700 * 120.10860 * 359.94671 * 19 18 16 21 21 C 1.37783 * 119.77541 * 179.97438 * 19 18 16 22 22 H 1.09002 * 109.47144 * 90.00711 * 1 2 3 23 23 H 1.09005 * 109.46888 * 209.99962 * 1 2 3 24 24 H 1.08993 * 109.47836 * 330.00261 * 1 2 3 25 25 H 1.07996 * 120.11872 * 359.97438 * 3 2 1 26 26 H 1.08005 * 126.49728 * 359.95226 * 5 4 3 27 27 H 1.09000 * 109.47006 * 205.16603 * 7 6 5 28 28 H 1.09002 * 109.47371 * 325.17151 * 7 6 5 29 29 H 0.97002 * 120.00007 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47391 * 269.69876 * 17 16 6 31 31 H 1.09001 * 109.46813 * 149.69932 * 17 16 6 32 32 H 1.09004 * 109.47041 * 29.70059 * 17 16 6 33 33 H 1.08999 * 109.46747 * 90.00273 * 20 19 18 34 34 H 1.09001 * 109.46959 * 209.99954 * 20 19 18 35 35 H 1.08993 * 109.47570 * 330.00397 * 20 19 18 36 36 H 1.08002 * 119.66414 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1848 1.1868 0.0000 4 6 3.5807 1.1875 0.0005 5 6 4.5984 2.2412 0.0012 6 6 5.7943 1.6317 0.0074 7 6 7.1254 2.3384 0.0156 8 6 7.5049 2.6783 1.4338 9 1 6.8482 2.4092 2.2479 10 6 8.6911 3.3321 1.6922 11 7 9.0225 3.6283 2.9299 12 14 9.8272 3.7969 0.2843 13 1 9.4751 5.1527 -0.2090 14 1 11.2335 3.7935 0.7613 15 1 9.6763 2.8142 -0.8188 16 7 5.6261 0.2737 0.0020 17 6 6.7126 -0.7090 0.0031 18 6 4.2834 -0.0315 0.0010 19 6 3.5732 -1.2274 0.0010 20 6 4.3080 -2.5431 0.0011 21 6 2.1955 -1.2050 0.0004 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5137 25 1 1.6424 2.1206 -0.0004 26 1 4.4202 3.3065 0.0006 27 1 7.8849 1.6876 -0.4177 28 1 7.0541 3.2544 -0.5709 29 1 9.8568 4.0886 3.1117 30 1 6.9828 -0.9531 -1.0242 31 1 6.3846 -1.6125 0.5171 32 1 7.5787 -0.2924 0.5175 33 1 4.4851 -2.8602 1.0288 34 1 3.7082 -3.2943 -0.5128 35 1 5.2622 -2.4263 -0.5126 36 1 1.6458 -2.1347 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260671129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:01 Heat of formation + Delta-G solvation = 26.502411 kcal Electronic energy + Delta-G solvation = -16990.949696 eV Core-core repulsion = 14439.156448 eV Total energy + Delta-G solvation = -2551.793248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.28789 -38.61198 -35.39473 -34.76792 -33.15075 -32.40135 -29.60296 -28.44631 -27.65693 -25.75790 -24.71377 -21.80436 -21.50425 -20.39896 -19.05155 -17.72094 -16.95952 -16.37267 -16.05167 -15.85009 -15.01726 -14.65245 -14.58426 -14.52666 -14.12878 -13.98349 -13.85866 -13.59602 -13.47611 -13.23529 -12.94071 -12.70864 -12.56604 -12.28513 -12.02237 -11.89452 -11.72860 -11.56407 -11.32455 -10.83609 -10.27105 -8.78643 -8.35495 -8.31241 -6.41318 0.27685 0.76299 1.36571 1.37386 1.48744 1.85498 2.05067 2.32007 2.98151 3.00298 3.80017 3.92397 4.01018 4.05627 4.14721 4.38416 4.44908 4.53145 4.60023 4.67733 4.70373 4.77624 4.81416 4.91384 4.93268 4.96688 5.06058 5.12558 5.17517 5.28333 5.40020 5.45588 5.65023 5.84547 5.98364 6.12471 6.16608 6.40822 6.54506 6.66433 7.22268 8.82891 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.005952 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.259894 B = 4703.452450 C = 5133.833336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.250 4.250 6 C 0.114 3.886 7 C 0.047 3.953 8 C -0.523 4.523 9 H 0.022 0.978 10 C 0.014 3.986 11 N -0.946 5.946 12 Si 0.952 3.048 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.242 1.242 16 N -0.485 5.485 17 C 0.067 3.933 18 C 0.065 3.935 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.113 4.113 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -11.812 -9.492 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.129 4.129 5 C -0.274 4.274 6 C 0.006 3.994 7 C 0.009 3.991 8 C -0.561 4.561 9 H 0.040 0.960 10 C -0.184 4.184 11 N -0.586 5.586 12 Si 0.774 3.226 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.165 1.165 16 N -0.169 5.169 17 C -0.074 4.074 18 C -0.041 4.041 19 C -0.103 4.103 20 C -0.171 4.171 21 C -0.132 4.132 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.143 0.857 26 H 0.155 0.845 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.985 -11.968 -9.384 18.761 hybrid contribution 0.919 0.899 0.192 1.300 sum -10.066 -11.068 -9.193 17.560 Atomic orbital electron populations 1.20718 0.88838 1.03302 1.02851 1.19700 0.97538 0.92162 1.02324 1.20286 0.90876 0.98876 1.01951 1.19505 0.94212 0.92617 1.06549 1.21501 0.90703 0.98225 1.16981 1.20714 0.97305 0.82473 0.98922 1.18316 0.88764 0.95583 0.96423 1.20986 1.05111 1.38461 0.91549 0.95976 1.25948 0.99235 0.94657 0.98557 1.70055 1.24894 1.42075 1.21549 0.85639 0.77476 0.80048 0.79413 1.18946 1.20597 1.16540 1.43899 1.04873 1.05311 1.62785 1.22306 0.89222 0.92101 1.03779 1.18502 0.83121 0.95795 1.06652 1.19238 0.94024 0.92384 1.04616 1.20952 1.00368 0.93003 1.02766 1.20873 0.91797 0.98513 1.02005 0.90481 0.90283 0.91571 0.85704 0.84480 0.94203 0.93497 0.92135 0.89677 0.87926 0.90821 0.90949 0.89038 0.91424 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.99 71.24 0.71 -1.14 16 2 C -0.12 -3.14 5.85 -20.10 -0.12 -3.26 16 3 C -0.10 -3.37 9.67 22.23 0.22 -3.15 16 4 C -0.12 -4.99 6.37 -20.20 -0.13 -5.12 16 5 C -0.25 -11.12 10.95 23.51 0.26 -10.86 16 6 C 0.11 5.19 6.02 40.86 0.25 5.44 16 7 C 0.05 2.26 4.04 29.10 0.12 2.37 16 8 C -0.52 -30.42 9.65 25.60 0.25 -30.18 16 9 H 0.02 1.47 7.98 -2.91 -0.02 1.45 16 10 C 0.01 0.79 5.47 84.65 0.46 1.26 16 11 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 12 Si 0.95 42.68 27.47 68.60 1.88 44.57 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 16 N -0.49 -19.35 3.18 -524.68 -1.67 -21.01 16 17 C 0.07 2.09 9.31 127.77 1.19 3.28 16 18 C 0.06 2.46 6.74 39.03 0.26 2.72 16 19 C -0.10 -2.98 5.89 -19.77 -0.12 -3.10 16 20 C -0.11 -2.48 8.80 71.24 0.63 -1.85 16 21 C -0.11 -2.93 9.31 22.29 0.21 -2.72 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.08 1.17 8.08 -2.38 -0.02 1.15 16 24 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 25 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 26 H 0.14 5.87 8.06 -2.91 -0.02 5.85 16 27 H 0.04 1.79 6.39 -2.39 -0.02 1.77 16 28 H 0.05 2.16 7.57 -2.39 -0.02 2.15 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.10 2.67 5.68 -2.39 -0.01 2.65 16 32 H 0.07 2.58 7.38 -2.38 -0.02 2.56 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 35 H 0.07 1.43 5.51 -2.39 -0.01 1.42 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -70.92 295.09 5.70 -65.21 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.01 Total: 16.14 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 4.18 Total: -46.32 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.37 Total: -79.60 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.57 kcal Total: -70.92 5.70 -65.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.717 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds