Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34241 * 125.03261 * 2 1 4 4 C 1.46489 * 106.99940 * 179.97438 * 3 2 1 5 5 C 1.39627 * 134.03854 * 179.97438 * 4 3 2 6 6 C 1.36627 * 119.76541 * 180.02562 * 5 4 3 7 7 C 1.50697 * 119.73559 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46901 * 90.00379 * 7 6 5 9 9 C 1.50701 * 109.47279 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00010 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00370 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99897 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47341 * 89.99789 * 13 11 9 15 15 H 1.48500 * 109.47508 * 210.00042 * 13 11 9 16 16 H 1.48499 * 109.47227 * 329.99805 * 13 11 9 17 17 C 1.38829 * 120.52963 * 0.02562 * 6 5 4 18 18 C 1.37748 * 120.66415 * 359.97438 * 17 6 5 19 19 C 1.39120 * 119.78130 * 0.04172 * 18 17 6 20 20 N 1.36830 * 125.04070 * 180.24217 * 2 1 3 21 21 C 1.46504 * 125.05887 * 359.83934 * 20 2 1 22 22 H 1.09005 * 109.46815 * 90.02425 * 1 2 3 23 23 H 1.08997 * 109.46938 * 210.02107 * 1 2 3 24 24 H 1.08996 * 109.47067 * 330.02257 * 1 2 3 25 25 H 1.08002 * 126.50079 * 359.92743 * 3 2 1 26 26 H 1.07997 * 120.11888 * 0.04440 * 5 4 3 27 27 H 1.08993 * 109.47480 * 210.00000 * 7 6 5 28 28 H 1.09000 * 109.47377 * 330.00532 * 7 6 5 29 29 H 1.09003 * 109.47171 * 299.99762 * 8 7 6 30 30 H 1.08992 * 109.47231 * 59.99890 * 8 7 6 31 31 H 0.96996 * 120.00508 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.66839 * 180.02562 * 17 6 5 33 33 H 1.08001 * 120.10681 * 180.02562 * 18 17 6 34 34 H 1.08995 * 109.46822 * 270.41719 * 21 20 2 35 35 H 1.08997 * 109.47099 * 30.41424 * 21 20 2 36 36 H 1.08998 * 109.46966 * 150.41250 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6457 0.0006 5 6 4.9042 1.2997 0.0005 6 6 6.0590 0.5695 0.0007 7 6 7.3900 1.2760 -0.0001 8 6 7.8408 1.5159 1.4422 9 6 9.1717 2.2230 1.4415 10 1 9.6485 2.4756 0.5060 11 6 9.7805 2.5475 2.6353 12 7 9.1997 2.2404 3.7745 13 14 11.4305 3.4233 2.6344 14 1 11.2113 4.8920 2.6328 15 1 12.1959 3.0384 3.8473 16 1 12.1960 3.0358 1.4224 17 6 6.0159 -0.8181 0.0006 18 6 4.8098 -1.4836 0.0007 19 6 3.6215 -0.7602 0.0001 20 7 2.2926 -1.1203 -0.0047 21 6 1.7939 -2.4978 -0.0072 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5135 25 1 1.9355 2.1236 -0.0011 26 1 4.9455 2.3789 0.0005 27 1 8.1281 0.6600 -0.5136 28 1 7.2936 2.2322 -0.5144 29 1 7.1028 2.1321 1.9558 30 1 7.9372 0.5599 1.9566 31 1 9.6279 2.4690 4.6143 32 1 6.9373 -1.3815 0.0012 33 1 4.7868 -2.5633 0.0010 34 1 1.6656 -2.8396 1.0198 35 1 0.8358 -2.5365 -0.5253 36 1 2.5094 -3.1423 -0.5179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = 38.968130 kcal Electronic energy + Delta-G solvation = -16428.924790 eV Core-core repulsion = 13877.672096 eV Total energy + Delta-G solvation = -2551.252694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09576 -37.39289 -33.65537 -32.84600 -31.87609 -30.52065 -29.11055 -26.84676 -25.84105 -24.43369 -21.65466 -21.35786 -19.72345 -19.51073 -16.75010 -16.30850 -15.62718 -15.43715 -14.57808 -14.39605 -13.94316 -13.53462 -13.34013 -12.97094 -12.77491 -12.75248 -12.40406 -12.30790 -12.14401 -11.98079 -11.44593 -11.13289 -10.88197 -10.56482 -10.41037 -10.35585 -9.70811 -9.44945 -9.19690 -8.99885 -8.27901 -7.57737 -7.21561 -5.92647 -3.95453 1.50150 2.09808 2.89208 2.93176 3.36487 3.42409 3.45941 4.36394 4.52508 4.67027 4.70316 4.94939 5.06692 5.19301 5.25499 5.35830 5.41385 5.42596 5.60174 5.64201 5.76640 5.84456 6.00425 6.23131 6.30426 6.37539 6.61403 6.78891 6.89527 7.06024 7.11195 7.22579 7.34687 7.50813 7.64506 7.77543 7.94119 8.08952 8.49386 9.12134 9.68120 11.18360 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.046007 B = 0.004268 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.456652 B = 6558.971900 C = 6756.472216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.064 3.936 3 C -0.203 4.203 4 C -0.103 4.103 5 C -0.076 4.076 6 C -0.082 4.082 7 C -0.075 4.075 8 C 0.029 3.971 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.090 4.090 18 C -0.135 4.135 19 C 0.083 3.917 20 N -0.490 5.490 21 C 0.081 3.919 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 -8.014 -8.382 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.228 4.228 4 C -0.107 4.107 5 C -0.095 4.095 6 C -0.083 4.083 7 C -0.112 4.112 8 C -0.008 4.008 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.109 4.109 18 C -0.156 4.156 19 C -0.021 4.021 20 N -0.176 5.176 21 C -0.061 4.061 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.116 -8.331 -8.195 20.725 hybrid contribution 0.901 0.351 0.250 0.999 sum -16.215 -7.980 -7.945 19.742 Atomic orbital electron populations 1.20404 0.88289 1.03301 1.02581 1.20194 0.93112 0.85654 1.05213 1.21425 0.90751 0.97349 1.13261 1.19157 0.93430 0.91930 1.06201 1.20166 0.89805 0.99496 1.00013 1.19830 0.96222 0.93408 0.98881 1.20759 0.90818 0.98175 1.01458 1.19083 0.95712 0.96965 0.89075 1.21292 1.04769 1.37551 0.92278 0.92629 1.25022 0.97681 0.96054 0.95678 1.69977 1.38804 1.47432 0.97222 0.86613 0.84109 0.79942 0.77444 1.20698 1.21293 1.19877 1.20785 0.96447 0.94175 0.99524 1.19889 0.89764 0.98296 1.07620 1.18156 0.83885 0.94118 1.05911 1.43598 1.03961 1.05270 1.64731 1.21811 1.00554 0.81191 1.02516 0.90953 0.91765 0.89951 0.84024 0.86215 0.92463 0.92443 0.96449 0.96498 0.93071 0.85845 0.87057 0.91766 0.90461 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.78 36.01 0.35 -0.37 16 2 C 0.06 0.83 6.83 -81.77 -0.56 0.27 16 3 C -0.20 -3.03 10.95 -37.67 -0.41 -3.44 16 4 C -0.10 -1.84 6.37 -105.14 -0.67 -2.51 16 5 C -0.08 -1.45 9.67 -39.65 -0.38 -1.83 16 6 C -0.08 -1.63 5.10 -104.99 -0.54 -2.17 16 7 C -0.07 -1.63 5.26 -27.88 -0.15 -1.77 16 8 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 9 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.09 -1.62 9.66 -39.54 -0.38 -2.00 16 18 C -0.14 -2.18 9.96 -39.43 -0.39 -2.58 16 19 C 0.08 1.39 6.81 -83.99 -0.57 0.82 16 20 N -0.49 -6.65 3.18 -117.20 -0.37 -7.02 16 21 C 0.08 0.73 10.59 59.85 0.63 1.36 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.44 7.58 -51.93 -0.39 0.05 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 27 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.51 7.52 -51.93 -0.39 0.12 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -33.31 306.18 -9.05 -42.36 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.39 Total: -2.65 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.62 Total: -27.43 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.36 Total: -33.89 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.31 -9.05 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.328 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds