Wall clock time and date at job start Mon Mar 30 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34241 * 125.03261 * 2 1 4 4 C 1.46489 * 106.99940 * 179.97438 * 3 2 1 5 5 C 1.39627 * 134.03854 * 179.97438 * 4 3 2 6 6 C 1.36627 * 119.76541 * 180.02562 * 5 4 3 7 7 C 1.50697 * 119.73559 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46901 * 90.00379 * 7 6 5 9 9 C 1.50701 * 109.47279 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99729 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00010 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00370 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99897 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47341 * 89.99789 * 13 11 9 15 15 H 1.48500 * 109.47508 * 210.00042 * 13 11 9 16 16 H 1.48499 * 109.47227 * 329.99805 * 13 11 9 17 17 C 1.38829 * 120.52963 * 0.02562 * 6 5 4 18 18 C 1.37748 * 120.66415 * 359.97438 * 17 6 5 19 19 C 1.39120 * 119.78130 * 0.04172 * 18 17 6 20 20 N 1.36830 * 125.04070 * 180.24217 * 2 1 3 21 21 C 1.46504 * 125.05887 * 359.83934 * 20 2 1 22 22 H 1.09005 * 109.46815 * 90.02425 * 1 2 3 23 23 H 1.08997 * 109.46938 * 210.02107 * 1 2 3 24 24 H 1.08996 * 109.47067 * 330.02257 * 1 2 3 25 25 H 1.08002 * 126.50079 * 359.92743 * 3 2 1 26 26 H 1.07997 * 120.11888 * 0.04440 * 5 4 3 27 27 H 1.08993 * 109.47480 * 210.00000 * 7 6 5 28 28 H 1.09000 * 109.47377 * 330.00532 * 7 6 5 29 29 H 1.09003 * 109.47171 * 299.99762 * 8 7 6 30 30 H 1.08992 * 109.47231 * 59.99890 * 8 7 6 31 31 H 0.96996 * 120.00508 * 180.02562 * 12 11 9 32 32 H 1.07996 * 119.66839 * 180.02562 * 17 6 5 33 33 H 1.08001 * 120.10681 * 180.02562 * 18 17 6 34 34 H 1.08995 * 109.46822 * 270.41719 * 21 20 2 35 35 H 1.08997 * 109.47099 * 30.41424 * 21 20 2 36 36 H 1.08998 * 109.46966 * 150.41250 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6457 0.0006 5 6 4.9042 1.2997 0.0005 6 6 6.0590 0.5695 0.0007 7 6 7.3900 1.2760 -0.0001 8 6 7.8408 1.5159 1.4422 9 6 9.1717 2.2230 1.4415 10 1 9.6485 2.4756 0.5060 11 6 9.7805 2.5475 2.6353 12 7 9.1997 2.2404 3.7745 13 14 11.4305 3.4233 2.6344 14 1 11.2113 4.8920 2.6328 15 1 12.1959 3.0384 3.8473 16 1 12.1960 3.0358 1.4224 17 6 6.0159 -0.8181 0.0006 18 6 4.8098 -1.4836 0.0007 19 6 3.6215 -0.7602 0.0001 20 7 2.2926 -1.1203 -0.0047 21 6 1.7939 -2.4978 -0.0072 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5135 25 1 1.9355 2.1236 -0.0011 26 1 4.9455 2.3789 0.0005 27 1 8.1281 0.6600 -0.5136 28 1 7.2936 2.2322 -0.5144 29 1 7.1028 2.1321 1.9558 30 1 7.9372 0.5599 1.9566 31 1 9.6279 2.4690 4.6143 32 1 6.9373 -1.3815 0.0012 33 1 4.7868 -2.5633 0.0010 34 1 1.6656 -2.8396 1.0198 35 1 0.8358 -2.5365 -0.5253 36 1 2.5094 -3.1423 -0.5179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:48 Heat of formation + Delta-G solvation = 21.106337 kcal Electronic energy + Delta-G solvation = -16429.699336 eV Core-core repulsion = 13877.672096 eV Total energy + Delta-G solvation = -2552.027240 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24669 -38.75363 -35.63888 -33.88766 -33.62660 -31.64288 -30.63394 -28.25507 -26.84729 -26.16511 -23.39418 -22.70163 -21.27898 -20.56995 -18.52754 -17.87286 -16.83075 -16.52134 -16.37145 -16.01135 -15.03468 -14.99526 -14.45507 -14.24496 -13.99494 -13.92514 -13.77788 -13.55237 -13.43535 -13.05156 -12.92733 -12.81744 -12.70181 -12.24422 -11.96978 -11.84715 -11.55431 -11.34102 -11.10901 -10.55722 -10.48208 -8.86782 -8.45189 -8.17539 -6.30775 0.23341 0.71267 1.40633 1.42882 1.54136 1.76723 1.93951 2.42279 2.98689 3.14183 3.76029 3.80190 3.98650 4.15934 4.18820 4.43852 4.45546 4.49194 4.60367 4.66007 4.68116 4.79646 4.81807 4.91030 4.99793 5.05479 5.09820 5.22834 5.25876 5.49421 5.53538 5.62123 5.83853 5.87914 5.93193 5.99671 6.24415 6.34355 6.50364 6.86320 7.38579 8.93708 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.046007 B = 0.004268 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.456652 B = 6558.971900 C = 6756.472216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 C -0.241 4.241 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.106 4.106 7 C -0.059 4.059 8 C 0.037 3.963 9 C -0.544 4.544 10 H 0.063 0.937 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.969 3.031 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.261 1.261 17 C -0.111 4.111 18 C -0.123 4.123 19 C 0.068 3.932 20 N -0.488 5.488 21 C 0.070 3.930 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.153 0.847 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.058 0.942 29 H -0.016 1.016 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.482 -9.184 -9.208 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.265 4.265 4 C -0.132 4.132 5 C -0.115 4.115 6 C -0.107 4.107 7 C -0.097 4.097 8 C 0.000 4.000 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.185 1.185 17 C -0.130 4.130 18 C -0.144 4.144 19 C -0.038 4.038 20 N -0.173 5.173 21 C -0.070 4.070 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.171 0.829 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.003 0.997 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.625 -9.522 -9.039 22.788 hybrid contribution 1.172 0.645 0.516 1.434 sum -17.453 -8.877 -8.523 21.355 Atomic orbital electron populations 1.20586 0.84401 1.04956 1.04364 1.20947 0.95276 0.84706 1.01370 1.21696 0.89775 0.99040 1.16035 1.19520 0.94164 0.93211 1.06306 1.20206 0.90712 0.99317 1.01245 1.19702 0.95183 0.94487 1.01331 1.20484 0.92470 0.98765 0.97943 1.18914 0.94610 0.94634 0.91816 1.21731 1.05655 1.37940 0.92902 0.91838 1.26033 1.02096 0.96706 0.95081 1.70126 1.40845 1.48558 0.98032 0.85395 0.78670 0.78677 0.77982 1.19745 1.20667 1.18482 1.20899 0.97808 0.93459 1.00839 1.20157 0.88903 0.99841 1.05464 1.18371 0.85625 0.93812 1.05967 1.43984 1.02776 1.07351 1.63153 1.22203 1.02181 0.78621 1.03973 0.88895 0.89645 0.88809 0.82916 0.86978 0.91705 0.92377 0.99739 0.99208 0.92789 0.85094 0.83766 0.90562 0.87377 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.78 71.24 0.70 -0.36 16 2 C 0.08 1.97 6.83 40.87 0.28 2.25 16 3 C -0.24 -7.12 10.95 23.51 0.26 -6.86 16 4 C -0.13 -4.65 6.37 -20.20 -0.13 -4.77 16 5 C -0.10 -3.89 9.67 22.23 0.22 -3.68 16 6 C -0.11 -4.43 5.10 -20.10 -0.10 -4.53 16 7 C -0.06 -2.72 5.26 29.85 0.16 -2.56 16 8 C 0.04 2.13 4.96 29.85 0.15 2.28 16 9 C -0.54 -32.46 9.11 25.60 0.23 -32.23 16 10 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 11 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 12 N -0.94 -59.34 13.29 21.45 0.28 -59.06 16 13 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 C -0.11 -4.07 9.66 22.30 0.22 -3.86 16 18 C -0.12 -3.89 9.96 22.37 0.22 -3.67 16 19 C 0.07 2.20 6.81 39.03 0.27 2.47 16 20 N -0.49 -11.98 3.18 -524.69 -1.67 -13.65 16 21 C 0.07 0.98 10.59 127.77 1.35 2.33 16 22 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.08 0.74 7.58 -2.39 -0.02 0.72 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 26 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 27 H 0.06 2.81 8.08 -2.39 -0.02 2.79 16 28 H 0.06 2.58 8.07 -2.39 -0.02 2.56 16 29 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.87 7.52 -2.39 -0.02 0.85 16 36 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -74.94 306.18 5.96 -68.98 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.04 Total: 8.95 kcal Atomic # 6 Polarization: -57.10 SS G_CDS: 4.27 Total: -52.83 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.38 Total: -72.71 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.94 5.96 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.091 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds