Wall clock time and date at job start Mon Mar 30 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47101 * 2 1 4 4 C 1.38941 * 119.70006 * 270.02244 * 3 2 1 5 5 C 1.37964 * 120.69601 * 179.97438 * 4 3 2 6 6 C 1.38941 * 119.89172 * 0.02562 * 5 4 3 7 7 C 1.41189 * 119.37949 * 359.97438 * 6 5 4 8 8 C 1.36427 * 119.70131 * 89.99902 * 3 2 1 9 9 C 1.40933 * 107.27695 * 180.02562 * 7 6 5 10 10 C 1.50700 * 126.25409 * 179.97438 * 9 7 6 11 11 C 1.39133 * 107.49208 * 359.97438 * 9 7 6 12 12 C 1.39925 * 125.69212 * 180.02562 * 11 9 7 13 13 H 1.08000 * 120.00215 * 323.01520 * 12 11 9 14 14 C 1.40189 * 119.99739 * 143.28972 * 12 11 9 15 15 N 1.30746 * 120.00160 * 339.59955 * 14 12 11 16 16 Si 1.86802 * 119.99883 * 159.59679 * 14 12 11 17 17 H 1.48498 * 109.46822 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46904 * 119.99996 * 16 14 12 19 19 H 1.48495 * 109.47222 * 240.00262 * 16 14 12 20 20 N 1.38036 * 132.79414 * 180.36442 * 6 5 4 21 21 C 1.46499 * 125.60676 * 359.90675 * 20 6 5 22 22 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47230 * 299.99602 * 1 2 3 24 24 H 1.09000 * 109.47360 * 60.00430 * 1 2 3 25 25 H 1.09008 * 109.47029 * 239.99993 * 2 1 3 26 26 H 1.09001 * 109.47368 * 120.00358 * 2 1 3 27 27 H 1.08001 * 119.65567 * 0.02562 * 4 3 2 28 28 H 1.07990 * 120.05488 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.09871 * 0.02562 * 8 3 2 30 30 H 1.09000 * 109.46932 * 270.01538 * 10 9 7 31 31 H 1.08999 * 109.46971 * 30.01598 * 10 9 7 32 32 H 1.08996 * 109.47182 * 150.01112 * 10 9 7 33 33 H 0.96992 * 120.00108 * 177.97723 * 15 14 12 34 34 H 1.09008 * 109.46445 * 275.40736 * 21 20 6 35 35 H 1.09000 * 109.46878 * 35.39821 * 21 20 6 36 36 H 1.08991 * 109.47400 * 155.40545 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2613 2.0700 -1.2069 5 6 2.7206 3.3707 -1.2309 6 6 2.9588 4.0430 -0.0385 7 6 2.7259 3.3827 1.1875 8 6 2.2576 2.0581 1.1850 9 6 3.0460 4.2888 2.2184 10 6 2.9521 4.0237 3.6989 11 6 3.4646 5.4728 1.6195 12 6 3.8736 6.6286 2.2938 13 1 3.3811 6.9228 3.2088 14 6 4.9189 7.4078 1.7785 15 7 5.7654 6.8868 0.9291 16 14 5.1022 9.1906 2.3054 17 1 4.0251 9.5356 3.2676 18 1 6.4244 9.3816 2.9538 19 1 5.0032 10.0715 1.1140 20 7 3.4027 5.3187 0.2463 21 6 3.7550 6.3400 -0.7432 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0771 1.5513 -2.1361 28 1 2.8955 3.8652 -2.1748 29 1 2.0769 1.5458 2.1185 30 1 1.9604 4.3020 4.0557 31 1 3.1228 2.9642 3.8899 32 1 3.7051 4.6130 4.2220 33 1 6.4710 7.4339 0.5502 34 1 4.7873 6.1957 -1.0623 35 1 3.0931 6.2546 -1.6049 36 1 3.6470 7.3292 -0.2986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260775379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:09 Heat of formation + Delta-G solvation = 26.453535 kcal Electronic energy + Delta-G solvation = -17273.663944 eV Core-core repulsion = 14721.868577 eV Total energy + Delta-G solvation = -2551.795368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91230 -36.77039 -33.79539 -32.50591 -32.24751 -28.93544 -28.31941 -27.66285 -25.46437 -23.60230 -22.39560 -21.08551 -19.55112 -18.23237 -17.10054 -15.54127 -15.17914 -14.74407 -14.37086 -13.99227 -13.56576 -13.07229 -12.91133 -12.53626 -12.47751 -12.19265 -11.93059 -11.69956 -11.61021 -11.37463 -11.20013 -11.14979 -10.80805 -10.67702 -10.59398 -10.39068 -9.98274 -9.76160 -9.59526 -9.00017 -8.31864 -7.09424 -6.77686 -6.26650 -4.48342 2.28860 2.74935 2.88314 2.99046 3.05063 3.81767 3.90318 4.29388 4.88172 5.07477 5.43471 5.44876 5.81059 5.83794 5.87618 6.03987 6.10513 6.20047 6.25585 6.31583 6.46727 6.52204 6.56011 6.63930 6.71852 6.84473 6.88178 6.93746 6.99894 7.08735 7.31302 7.31507 7.58361 7.71942 7.90178 8.02567 8.09960 8.42905 8.60634 8.87359 9.07326 10.01710 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.006572 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.440232 B = 4259.697533 C = 4760.236221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.108 4.108 4 C -0.165 4.165 5 C -0.114 4.114 6 C 0.045 3.955 7 C -0.034 4.034 8 C -0.124 4.124 9 C -0.334 4.334 10 C -0.036 4.036 11 C 0.309 3.691 12 C -0.467 4.467 13 H 0.097 0.903 14 C 0.078 3.922 15 N -0.799 5.799 16 Si 0.905 3.095 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.272 1.272 20 N -0.482 5.482 21 C 0.113 3.887 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.282 0.718 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 -3.166 -2.332 5.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.110 4.110 4 C -0.184 4.184 5 C -0.135 4.135 6 C -0.059 4.059 7 C -0.039 4.039 8 C -0.142 4.142 9 C -0.339 4.339 10 C -0.093 4.093 11 C 0.201 3.799 12 C -0.501 4.501 13 H 0.115 0.885 14 C -0.140 4.140 15 N -0.426 5.426 16 Si 0.729 3.271 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.197 1.197 20 N -0.167 5.167 21 C -0.029 4.029 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.522 -2.898 -2.665 5.283 hybrid contribution 0.383 0.959 -0.080 1.036 sum -3.139 -1.939 -2.745 4.599 Atomic orbital electron populations 1.21737 0.95890 1.00359 1.02047 1.20362 0.95288 0.94085 1.01294 1.18940 1.03543 0.95278 0.93199 1.20128 1.07616 0.94464 0.96186 1.19760 1.04571 0.94841 0.94326 1.18259 1.06001 0.86758 0.94844 1.17984 1.00024 0.93294 0.92632 1.19935 1.04235 0.93890 0.96184 1.19247 1.27101 0.93997 0.93521 1.19549 0.98839 0.98602 0.92300 1.17768 0.89787 0.92902 0.79455 1.18735 1.15508 1.06368 1.09479 0.88515 1.25888 0.93984 1.00303 0.93847 1.69878 1.11210 1.37055 1.24469 0.86298 0.79301 0.81795 0.79699 1.18161 1.19840 1.19716 1.44361 1.56438 1.09727 1.06204 1.21582 0.99715 0.91726 0.89921 0.93521 0.92740 0.92913 0.92292 0.92173 0.88125 0.88504 0.88181 0.95324 0.94721 0.93360 0.90682 0.91699 0.93960 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.57 16 2 C -0.07 -1.11 6.04 -27.88 -0.17 -1.28 16 3 C -0.11 -2.10 5.10 -105.01 -0.54 -2.63 16 4 C -0.16 -3.23 9.67 -39.42 -0.38 -3.61 16 5 C -0.11 -2.45 9.98 -39.42 -0.39 -2.84 16 6 C 0.05 1.11 6.81 -83.69 -0.57 0.54 16 7 C -0.03 -0.85 6.09 -106.91 -0.65 -1.50 16 8 C -0.12 -2.68 9.69 -39.39 -0.38 -3.06 16 9 C -0.33 -8.51 6.26 -103.27 -0.65 -9.15 16 10 C -0.04 -0.78 10.16 36.01 0.37 -0.41 16 11 C 0.31 8.12 6.09 -83.97 -0.51 7.61 16 12 C -0.47 -11.83 8.54 -38.22 -0.33 -12.15 16 13 H 0.10 2.38 7.93 -52.49 -0.42 1.96 16 14 C 0.08 1.84 3.88 -17.28 -0.07 1.77 16 15 N -0.80 -19.45 10.55 55.56 0.59 -18.86 16 16 Si 0.91 17.61 29.61 -169.99 -5.03 12.57 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 N -0.48 -12.04 3.18 -118.87 -0.38 -12.41 16 21 C 0.11 2.45 9.11 59.85 0.55 2.99 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.82 8.08 -51.92 -0.42 0.40 16 26 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 27 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.04 7.91 -51.93 -0.41 0.63 16 33 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 34 H 0.06 1.43 7.22 -51.92 -0.37 1.05 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.54 6.52 -51.93 -0.34 1.20 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -27.33 299.03 -8.99 -36.32 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.32 Total: 3.18 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.35 Total: -25.31 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.21 Total: -31.28 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.33 -8.99 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260775379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.778 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds