Wall clock time and date at job start Mon Mar 30 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47101 * 2 1 4 4 C 1.38941 * 119.70006 * 270.02244 * 3 2 1 5 5 C 1.37964 * 120.69601 * 179.97438 * 4 3 2 6 6 C 1.38941 * 119.89172 * 0.02562 * 5 4 3 7 7 C 1.41189 * 119.37949 * 359.97438 * 6 5 4 8 8 C 1.36427 * 119.70131 * 89.99902 * 3 2 1 9 9 C 1.40933 * 107.27695 * 180.02562 * 7 6 5 10 10 C 1.50700 * 126.25409 * 179.97438 * 9 7 6 11 11 C 1.39133 * 107.49208 * 359.97438 * 9 7 6 12 12 C 1.39925 * 125.69212 * 180.02562 * 11 9 7 13 13 H 1.08000 * 120.00215 * 323.01520 * 12 11 9 14 14 C 1.40189 * 119.99739 * 143.28972 * 12 11 9 15 15 N 1.30746 * 120.00160 * 339.59955 * 14 12 11 16 16 Si 1.86802 * 119.99883 * 159.59679 * 14 12 11 17 17 H 1.48498 * 109.46822 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46904 * 119.99996 * 16 14 12 19 19 H 1.48495 * 109.47222 * 240.00262 * 16 14 12 20 20 N 1.38036 * 132.79414 * 180.36442 * 6 5 4 21 21 C 1.46499 * 125.60676 * 359.90675 * 20 6 5 22 22 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47230 * 299.99602 * 1 2 3 24 24 H 1.09000 * 109.47360 * 60.00430 * 1 2 3 25 25 H 1.09008 * 109.47029 * 239.99993 * 2 1 3 26 26 H 1.09001 * 109.47368 * 120.00358 * 2 1 3 27 27 H 1.08001 * 119.65567 * 0.02562 * 4 3 2 28 28 H 1.07990 * 120.05488 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.09871 * 0.02562 * 8 3 2 30 30 H 1.09000 * 109.46932 * 270.01538 * 10 9 7 31 31 H 1.08999 * 109.46971 * 30.01598 * 10 9 7 32 32 H 1.08996 * 109.47182 * 150.01112 * 10 9 7 33 33 H 0.96992 * 120.00108 * 177.97723 * 15 14 12 34 34 H 1.09008 * 109.46445 * 275.40736 * 21 20 6 35 35 H 1.09000 * 109.46878 * 35.39821 * 21 20 6 36 36 H 1.08991 * 109.47400 * 155.40545 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2613 2.0700 -1.2069 5 6 2.7206 3.3707 -1.2309 6 6 2.9588 4.0430 -0.0385 7 6 2.7259 3.3827 1.1875 8 6 2.2576 2.0581 1.1850 9 6 3.0460 4.2888 2.2184 10 6 2.9521 4.0237 3.6989 11 6 3.4646 5.4728 1.6195 12 6 3.8736 6.6286 2.2938 13 1 3.3811 6.9228 3.2088 14 6 4.9189 7.4078 1.7785 15 7 5.7654 6.8868 0.9291 16 14 5.1022 9.1906 2.3054 17 1 4.0251 9.5356 3.2676 18 1 6.4244 9.3816 2.9538 19 1 5.0032 10.0715 1.1140 20 7 3.4027 5.3187 0.2463 21 6 3.7550 6.3400 -0.7432 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0771 1.5513 -2.1361 28 1 2.8955 3.8652 -2.1748 29 1 2.0769 1.5458 2.1185 30 1 1.9604 4.3020 4.0557 31 1 3.1228 2.9642 3.8899 32 1 3.7051 4.6130 4.2220 33 1 6.4710 7.4339 0.5502 34 1 4.7873 6.1957 -1.0623 35 1 3.0931 6.2546 -1.6049 36 1 3.6470 7.3292 -0.2986 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260775379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:09 Heat of formation + Delta-G solvation = 14.445977 kcal Electronic energy + Delta-G solvation = -17274.184631 eV Core-core repulsion = 14721.868577 eV Total energy + Delta-G solvation = -2552.316054 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65411 -38.37317 -35.50254 -34.27158 -33.70574 -30.65965 -29.88927 -29.43395 -27.12818 -25.29051 -23.80761 -22.78987 -21.17929 -19.96855 -18.91282 -17.27604 -16.88851 -16.33726 -15.88501 -15.71195 -14.97081 -14.75626 -14.36819 -14.10030 -13.96206 -13.84002 -13.59208 -13.30034 -13.15394 -13.10576 -12.80770 -12.73444 -12.42726 -12.28934 -11.95367 -11.79753 -11.56307 -11.40774 -11.24595 -10.74495 -10.04701 -8.86956 -8.53027 -8.05218 -6.35048 0.58333 1.09123 1.32494 1.39263 1.53367 2.11995 2.20033 2.54395 3.08744 3.33631 4.09079 4.13733 4.20773 4.39610 4.49181 4.59456 4.68257 4.74058 4.78830 4.87833 4.88649 4.95484 5.09410 5.12946 5.15122 5.19854 5.23784 5.28590 5.39577 5.49222 5.59045 5.64357 5.83349 6.03507 6.11967 6.25891 6.41539 6.59322 6.83329 7.04442 7.26399 8.27577 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.006572 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.440232 B = 4259.697533 C = 4760.236221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.155 4.155 5 C -0.124 4.124 6 C 0.014 3.986 7 C -0.068 4.068 8 C -0.135 4.135 9 C -0.367 4.367 10 C -0.028 4.028 11 C 0.274 3.726 12 C -0.498 4.498 13 H 0.090 0.910 14 C 0.047 3.953 15 N -0.828 5.828 16 Si 0.977 3.023 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.260 1.260 20 N -0.493 5.493 21 C 0.118 3.882 22 H 0.074 0.926 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.291 0.709 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 -4.182 -3.464 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.105 4.105 4 C -0.174 4.174 5 C -0.145 4.145 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.154 4.154 9 C -0.371 4.371 10 C -0.085 4.085 11 C 0.166 3.834 12 C -0.531 4.531 13 H 0.108 0.892 14 C -0.169 4.169 15 N -0.456 5.456 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.184 1.184 20 N -0.178 5.178 21 C -0.024 4.024 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.184 -3.931 -3.809 6.890 hybrid contribution 0.532 1.077 0.189 1.217 sum -3.651 -2.854 -3.620 5.881 Atomic orbital electron populations 1.21704 0.94426 1.02083 1.01480 1.20444 0.96415 0.91225 1.02787 1.19458 1.01541 0.97258 0.92241 1.20632 1.05202 0.93705 0.97824 1.20117 1.04545 0.95721 0.94134 1.18727 1.07229 0.87000 0.96018 1.18356 1.01473 0.94692 0.92757 1.20196 1.04318 0.93047 0.97808 1.19793 1.27755 0.94454 0.95129 1.19503 0.99078 0.99157 0.90774 1.18143 0.91101 0.93687 0.80496 1.18871 1.16764 1.07429 1.10036 0.89170 1.26602 0.92855 1.03896 0.93509 1.69913 1.11680 1.38696 1.25284 0.85234 0.79020 0.76497 0.79509 1.18290 1.19447 1.18449 1.44518 1.56575 1.10470 1.06220 1.21577 0.99787 0.90895 0.90129 0.90702 0.93885 0.92961 0.90201 0.91366 0.84525 0.86661 0.87200 0.94406 0.93529 0.94093 0.89871 0.92520 0.91434 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.89 71.98 0.71 -2.57 16 2 C -0.07 -1.91 6.04 29.85 0.18 -1.73 16 3 C -0.10 -3.77 5.10 -20.12 -0.10 -3.88 16 4 C -0.15 -5.63 9.67 22.37 0.22 -5.41 16 5 C -0.12 -5.18 9.98 22.37 0.22 -4.96 16 6 C 0.01 0.69 6.81 39.06 0.27 0.96 16 7 C -0.07 -3.42 6.09 -21.35 -0.13 -3.55 16 8 C -0.13 -5.77 9.69 22.40 0.22 -5.55 16 9 C -0.37 -19.36 6.26 -18.99 -0.12 -19.47 16 10 C -0.03 -1.26 10.16 71.24 0.72 -0.53 16 11 C 0.27 14.99 6.09 38.74 0.24 15.23 16 12 C -0.50 -26.17 8.54 23.15 0.20 -25.97 16 13 H 0.09 4.66 7.93 -2.91 -0.02 4.63 16 14 C 0.05 2.26 3.88 85.33 0.33 2.59 16 15 N -0.83 -41.10 10.55 21.87 0.23 -40.87 16 16 Si 0.98 36.41 29.61 68.60 2.03 38.44 16 17 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 18 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 20 N -0.49 -25.25 3.18 -529.99 -1.69 -26.93 16 21 C 0.12 5.20 9.11 127.77 1.16 6.36 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.84 8.08 -2.38 -0.02 1.82 16 26 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 27 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 28 H 0.12 4.26 8.06 -2.92 -0.02 4.24 16 29 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.84 7.91 -2.39 -0.02 1.82 16 33 H 0.29 12.96 8.29 -92.71 -0.77 12.19 16 34 H 0.06 2.55 7.22 -2.38 -0.02 2.53 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.06 2.87 6.52 -2.39 -0.02 2.86 16 Total: -1.00 -60.36 299.03 5.74 -54.61 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.05 Total: 23.24 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 4.12 Total: -48.49 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.45 Total: -67.80 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -60.36 5.74 -54.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260775379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.058 kcal (2) G-P(sol) polarization free energy of solvation -60.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds