Wall clock time and date at job start Mon Mar 30 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37788 * 119.66738 * 2 1 4 4 C 1.39083 * 119.78149 * 179.97438 * 3 2 1 5 5 C 1.40710 * 119.32937 * 0.02562 * 4 3 2 6 6 C 1.46494 * 106.03392 * 179.97438 * 5 4 3 7 7 C 1.34227 * 107.00138 * 0.02562 * 6 5 4 8 8 C 1.50698 * 125.03237 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47389 * 85.02215 * 8 7 6 10 10 H 1.07997 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00007 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00150 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00138 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47272 * 89.99736 * 13 11 9 15 15 H 1.48495 * 109.47565 * 209.99569 * 13 11 9 16 16 H 1.48498 * 109.47180 * 329.99948 * 13 11 9 17 17 N 1.36835 * 109.94126 * 359.97438 * 7 6 5 18 18 C 1.46497 * 125.06558 * 179.97438 * 17 7 6 19 19 C 1.39592 * 119.93159 * 0.02562 * 5 4 3 20 20 C 1.50695 * 120.11580 * 180.25340 * 19 5 4 21 21 C 1.36665 * 119.76143 * 359.97438 * 19 5 4 22 22 H 1.08999 * 109.47761 * 269.97963 * 1 2 3 23 23 H 1.09003 * 109.47341 * 29.98049 * 1 2 3 24 24 H 1.09007 * 109.47305 * 149.97595 * 1 2 3 25 25 H 1.08001 * 120.11258 * 0.02640 * 3 2 1 26 26 H 1.08001 * 126.49918 * 179.97438 * 6 5 4 27 27 H 1.09008 * 109.47289 * 205.02096 * 8 7 6 28 28 H 1.09002 * 109.46857 * 325.01743 * 8 7 6 29 29 H 0.96999 * 120.00388 * 180.02562 * 12 11 9 30 30 H 1.09004 * 109.47218 * 270.02356 * 18 17 7 31 31 H 1.08996 * 109.47119 * 30.02412 * 18 17 7 32 32 H 1.09001 * 109.46978 * 150.02717 * 18 17 7 33 33 H 1.09000 * 109.47478 * 269.72437 * 20 19 5 34 34 H 1.08997 * 109.47272 * 29.73037 * 20 19 5 35 35 H 1.09004 * 109.47054 * 149.72842 * 20 19 5 36 36 H 1.08001 * 119.73312 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.1973 0.0000 4 6 3.5797 1.2000 0.0005 5 6 4.2714 -0.0253 0.0005 6 6 5.6964 0.3144 0.0005 7 6 5.7805 1.6540 0.0011 8 6 7.0662 2.4401 0.0019 9 6 7.5597 2.5976 -1.4133 10 1 6.9986 2.1707 -2.2314 11 6 8.7279 3.2856 -1.6635 12 7 9.4115 3.8050 -0.6672 13 14 9.3400 3.4802 -3.4176 14 1 8.7750 4.7221 -4.0042 15 1 10.8226 3.5625 -3.4184 16 1 8.9087 2.3108 -4.2250 17 7 4.5260 2.2004 0.0009 18 6 4.2331 3.6358 0.0019 19 6 3.5603 -1.2266 -0.0006 20 6 4.2969 -2.5412 0.0052 21 6 2.1938 -1.2060 -0.0011 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6453 2.1305 0.0004 26 1 6.5227 -0.3811 0.0009 27 1 6.8904 3.4240 0.4369 28 1 7.8152 1.9110 0.5911 29 1 10.2332 4.2894 -0.8432 30 1 4.1603 3.9910 1.0299 31 1 5.0325 4.1701 -0.5114 32 1 3.2885 3.8142 -0.5118 33 1 4.4749 -2.8625 -1.0211 34 1 5.2506 -2.4212 0.5190 35 1 3.6977 -3.2911 0.5219 36 1 1.6441 -2.1356 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260779782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:06 Heat of formation + Delta-G solvation = 34.560464 kcal Electronic energy + Delta-G solvation = -16886.464215 eV Core-core repulsion = 14335.020390 eV Total energy + Delta-G solvation = -2551.443825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76165 -37.32910 -33.50287 -33.28865 -31.18715 -30.76734 -28.31158 -26.84668 -25.67615 -24.96842 -22.85755 -21.02050 -19.78961 -18.57018 -16.47541 -16.12011 -15.69896 -14.77418 -14.69859 -14.41190 -13.55299 -13.47317 -13.23725 -12.97384 -12.56157 -12.39229 -12.24403 -11.98883 -11.80435 -11.69440 -11.64143 -11.35491 -11.05135 -10.78506 -10.63776 -10.34870 -10.28649 -9.78804 -9.45669 -8.80142 -8.52438 -7.42166 -6.84471 -6.12916 -4.18668 1.63190 2.10167 3.25196 3.31909 3.35796 3.48656 3.55557 4.31145 4.38780 5.05865 5.13492 5.20592 5.28444 5.48709 5.51405 5.61095 5.69623 5.72262 5.75860 5.80776 5.94634 5.97368 6.01372 6.08823 6.21651 6.23160 6.55306 6.65717 6.71175 6.97270 7.10764 7.13787 7.34504 7.39425 7.69144 7.81901 7.99804 8.02519 8.22998 8.86160 9.46296 10.95592 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.005823 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.086938 B = 4807.426376 C = 5186.550911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.086 4.086 3 C -0.133 4.133 4 C 0.091 3.909 5 C -0.098 4.098 6 C -0.235 4.235 7 C 0.140 3.860 8 C 0.069 3.931 9 C -0.515 4.515 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.483 5.483 18 C 0.081 3.919 19 C -0.045 4.045 20 C -0.108 4.108 21 C -0.156 4.156 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.139 0.861 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 -5.762 2.042 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.015 4.015 5 C -0.104 4.104 6 C -0.259 4.259 7 C 0.033 3.967 8 C 0.032 3.968 9 C -0.553 4.553 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.197 1.197 17 N -0.167 5.167 18 C -0.061 4.061 19 C -0.045 4.045 20 C -0.165 4.165 21 C -0.175 4.175 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.157 0.843 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.159 -5.306 2.085 14.341 hybrid contribution 0.404 0.336 -0.968 1.101 sum -12.756 -4.970 1.118 13.735 Atomic orbital electron populations 1.20666 0.91760 1.02026 1.01586 1.19299 0.95034 0.92325 1.02041 1.19698 0.90051 0.97527 1.08087 1.18214 0.90553 0.88097 1.04679 1.19128 0.93791 0.91529 1.05905 1.21258 0.93332 0.93932 1.17331 1.21467 0.86156 0.93423 0.95629 1.18104 0.85959 0.94268 0.98477 1.21014 1.07729 1.34942 0.91637 0.92291 1.24985 0.96391 0.95310 0.97410 1.69945 1.16302 1.35996 1.30901 0.86502 0.77950 0.78619 0.84483 1.20608 1.21028 1.19685 1.43907 1.04662 1.05111 1.62989 1.21848 1.02785 0.79307 1.02184 1.18970 0.92988 0.93507 0.99056 1.20687 1.00167 0.93742 1.01880 1.20194 0.93172 0.96783 1.07375 0.91871 0.92208 0.92007 0.87235 0.84338 0.95290 0.93570 0.92672 0.92150 0.88709 0.91244 0.91596 0.91489 0.92261 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.99 36.00 0.36 -0.78 16 2 C -0.09 -1.28 5.88 -104.59 -0.61 -1.89 16 3 C -0.13 -2.20 9.60 -39.43 -0.38 -2.58 16 4 C 0.09 1.77 6.81 -83.98 -0.57 1.20 16 5 C -0.10 -1.96 6.14 -105.13 -0.65 -2.61 16 6 C -0.24 -5.07 10.64 -37.67 -0.40 -5.47 16 7 C 0.14 3.17 6.02 -81.77 -0.49 2.68 16 8 C 0.07 1.75 4.97 -29.04 -0.14 1.61 16 9 C -0.51 -14.10 9.09 -34.44 -0.31 -14.41 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.48 -9.81 3.18 -117.20 -0.37 -10.18 16 18 C 0.08 1.34 10.56 59.85 0.63 1.97 16 19 C -0.04 -0.76 5.87 -104.69 -0.61 -1.37 16 20 C -0.11 -1.50 9.95 36.00 0.36 -1.14 16 21 C -0.16 -2.37 9.26 -39.95 -0.37 -2.74 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.06 0.60 8.08 -51.92 -0.42 0.18 16 25 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 27 H 0.03 0.74 7.34 -51.92 -0.38 0.36 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.70 7.40 -51.93 -0.38 1.31 16 32 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 35 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -29.96 305.34 -8.70 -38.67 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.36 Total: -0.46 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -3.29 Total: -23.96 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.36 Total: -34.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.96 -8.70 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260779782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.227 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds