Wall clock time and date at job start Mon Mar 30 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37788 * 119.66738 * 2 1 4 4 C 1.39083 * 119.78149 * 179.97438 * 3 2 1 5 5 C 1.40710 * 119.32937 * 0.02562 * 4 3 2 6 6 C 1.46494 * 106.03392 * 179.97438 * 5 4 3 7 7 C 1.34227 * 107.00138 * 0.02562 * 6 5 4 8 8 C 1.50698 * 125.03237 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47389 * 85.02215 * 8 7 6 10 10 H 1.07997 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00007 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00150 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00138 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47272 * 89.99736 * 13 11 9 15 15 H 1.48495 * 109.47565 * 209.99569 * 13 11 9 16 16 H 1.48498 * 109.47180 * 329.99948 * 13 11 9 17 17 N 1.36835 * 109.94126 * 359.97438 * 7 6 5 18 18 C 1.46497 * 125.06558 * 179.97438 * 17 7 6 19 19 C 1.39592 * 119.93159 * 0.02562 * 5 4 3 20 20 C 1.50695 * 120.11580 * 180.25340 * 19 5 4 21 21 C 1.36665 * 119.76143 * 359.97438 * 19 5 4 22 22 H 1.08999 * 109.47761 * 269.97963 * 1 2 3 23 23 H 1.09003 * 109.47341 * 29.98049 * 1 2 3 24 24 H 1.09007 * 109.47305 * 149.97595 * 1 2 3 25 25 H 1.08001 * 120.11258 * 0.02640 * 3 2 1 26 26 H 1.08001 * 126.49918 * 179.97438 * 6 5 4 27 27 H 1.09008 * 109.47289 * 205.02096 * 8 7 6 28 28 H 1.09002 * 109.46857 * 325.01743 * 8 7 6 29 29 H 0.96999 * 120.00388 * 180.02562 * 12 11 9 30 30 H 1.09004 * 109.47218 * 270.02356 * 18 17 7 31 31 H 1.08996 * 109.47119 * 30.02412 * 18 17 7 32 32 H 1.09001 * 109.46978 * 150.02717 * 18 17 7 33 33 H 1.09000 * 109.47478 * 269.72437 * 20 19 5 34 34 H 1.08997 * 109.47272 * 29.73037 * 20 19 5 35 35 H 1.09004 * 109.47054 * 149.72842 * 20 19 5 36 36 H 1.08001 * 119.73312 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.1973 0.0000 4 6 3.5797 1.2000 0.0005 5 6 4.2714 -0.0253 0.0005 6 6 5.6964 0.3144 0.0005 7 6 5.7805 1.6540 0.0011 8 6 7.0662 2.4401 0.0019 9 6 7.5597 2.5976 -1.4133 10 1 6.9986 2.1707 -2.2314 11 6 8.7279 3.2856 -1.6635 12 7 9.4115 3.8050 -0.6672 13 14 9.3400 3.4802 -3.4176 14 1 8.7750 4.7221 -4.0042 15 1 10.8226 3.5625 -3.4184 16 1 8.9087 2.3108 -4.2250 17 7 4.5260 2.2004 0.0009 18 6 4.2331 3.6358 0.0019 19 6 3.5603 -1.2266 -0.0006 20 6 4.2969 -2.5412 0.0052 21 6 2.1938 -1.2060 -0.0011 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6453 2.1305 0.0004 26 1 6.5227 -0.3811 0.0009 27 1 6.8904 3.4240 0.4369 28 1 7.8152 1.9110 0.5911 29 1 10.2332 4.2894 -0.8432 30 1 4.1603 3.9910 1.0299 31 1 5.0325 4.1701 -0.5114 32 1 3.2885 3.8142 -0.5118 33 1 4.4749 -2.8625 -1.0211 34 1 5.2506 -2.4212 0.5190 35 1 3.6977 -3.2911 0.5219 36 1 1.6441 -2.1356 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260779782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:06 Heat of formation + Delta-G solvation = 19.977247 kcal Electronic energy + Delta-G solvation = -16887.096591 eV Core-core repulsion = 14335.020390 eV Total energy + Delta-G solvation = -2552.076201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20796 -38.64834 -35.38329 -34.70012 -32.66675 -32.31321 -29.87199 -27.98668 -27.05444 -26.59607 -24.62242 -22.42808 -21.06455 -20.12051 -18.58889 -17.58183 -17.09954 -16.50921 -16.19464 -15.80510 -14.96067 -14.64119 -14.47966 -14.38325 -14.03109 -13.91895 -13.58124 -13.39086 -13.22144 -13.12151 -13.05609 -12.71856 -12.61198 -12.55178 -12.22126 -11.83645 -11.78438 -11.56681 -11.25070 -10.65765 -10.21452 -8.84170 -8.39117 -8.17123 -6.39207 0.29497 0.79599 1.37516 1.38912 1.50446 1.90199 2.05602 2.39301 2.99564 3.05922 3.82236 3.96260 4.05487 4.10271 4.33867 4.40670 4.46915 4.52028 4.65412 4.67388 4.80580 4.81969 4.87533 4.95492 5.01503 5.03864 5.16532 5.17507 5.22795 5.37406 5.43543 5.66085 5.75213 5.82406 6.00302 6.07179 6.18696 6.45161 6.58481 6.70423 7.30022 8.83508 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.005823 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.086938 B = 4807.426376 C = 5186.550911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.074 4.074 3 C -0.147 4.147 4 C 0.076 3.924 5 C -0.134 4.134 6 C -0.242 4.242 7 C 0.107 3.893 8 C 0.084 3.916 9 C -0.530 4.530 10 H 0.048 0.952 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.964 3.036 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.271 1.271 17 N -0.490 5.490 18 C 0.078 3.922 19 C -0.054 4.054 20 C -0.107 4.107 21 C -0.156 4.156 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -6.778 1.233 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.075 4.075 3 C -0.168 4.168 4 C -0.030 4.030 5 C -0.138 4.138 6 C -0.266 4.266 7 C -0.001 4.001 8 C 0.046 3.954 9 C -0.568 4.568 10 H 0.066 0.934 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.788 3.212 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.195 1.195 17 N -0.174 5.174 18 C -0.063 4.063 19 C -0.055 4.055 20 C -0.163 4.163 21 C -0.174 4.174 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.945 -6.315 1.282 17.198 hybrid contribution 1.123 0.557 -0.666 1.420 sum -14.822 -5.758 0.616 15.913 Atomic orbital electron populations 1.20759 0.88421 1.03602 1.03084 1.19886 0.97388 0.91512 0.98696 1.20054 0.88757 0.99435 1.08554 1.18659 0.91714 0.87605 1.05024 1.19352 0.92822 0.93338 1.08328 1.21382 0.94782 0.93685 1.16774 1.21022 0.86390 0.93722 0.98940 1.17738 0.87086 0.93483 0.97074 1.21207 1.08138 1.35143 0.92296 0.93373 1.25813 0.96365 0.94729 1.01636 1.70048 1.16753 1.36526 1.33038 0.85459 0.77622 0.78766 0.79305 1.19510 1.20163 1.19539 1.43988 1.03950 1.06410 1.63008 1.21993 1.03310 0.77596 1.03360 1.19389 0.94104 0.93595 0.98387 1.20733 0.99930 0.93088 1.02589 1.20656 0.92540 0.98500 1.05753 0.90216 0.91058 0.90135 0.85051 0.84818 0.96760 0.96172 0.92299 0.90575 0.90861 0.88284 0.90906 0.92576 0.89342 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.99 71.23 0.71 -1.02 16 2 C -0.07 -1.92 5.88 -19.84 -0.12 -2.04 16 3 C -0.15 -4.54 9.60 22.37 0.21 -4.32 16 4 C 0.08 2.94 6.81 39.03 0.27 3.20 16 5 C -0.13 -5.38 6.14 -20.20 -0.12 -5.50 16 6 C -0.24 -10.99 10.64 23.51 0.25 -10.74 16 7 C 0.11 5.10 6.02 40.86 0.25 5.35 16 8 C 0.08 4.52 4.97 29.10 0.14 4.66 16 9 C -0.53 -30.30 9.09 25.60 0.23 -30.06 16 10 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 11 C 0.01 0.77 5.46 84.65 0.46 1.23 16 12 N -0.92 -54.39 13.29 21.45 0.28 -54.10 16 13 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 N -0.49 -20.40 3.18 -524.70 -1.67 -22.07 16 18 C 0.08 2.64 10.56 127.77 1.35 3.99 16 19 C -0.05 -1.76 5.87 -19.91 -0.12 -1.88 16 20 C -0.11 -2.79 9.95 71.23 0.71 -2.08 16 21 C -0.16 -4.18 9.26 22.03 0.20 -3.98 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 24 H 0.08 1.11 8.08 -2.38 -0.02 1.09 16 25 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 26 H 0.13 5.89 8.06 -2.91 -0.02 5.87 16 27 H 0.01 0.78 7.34 -2.38 -0.02 0.77 16 28 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.75 7.40 -2.39 -0.02 2.73 16 32 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.57 7.90 -2.39 -0.02 1.55 16 35 H 0.09 1.76 8.08 -2.38 -0.02 1.74 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -66.79 305.34 6.12 -60.67 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.05 Total: 12.66 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 4.43 Total: -43.18 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.38 Total: -76.17 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.79 6.12 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260779782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.644 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds