Wall clock time and date at job start Mon Mar 30 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.46488 * 126.50005 * 2 1 4 4 C 1.39631 * 134.02816 * 0.27985 * 3 2 1 5 5 C 1.36631 * 119.76156 * 179.61772 * 4 3 2 6 6 C 1.38826 * 120.53000 * 0.06992 * 5 4 3 7 7 C 1.37755 * 120.66419 * 359.96249 * 6 5 4 8 8 C 1.39129 * 119.77943 * 0.02562 * 7 6 5 9 9 N 1.37683 * 133.50481 * 180.02562 * 8 7 6 10 10 C 1.46500 * 125.06835 * 359.97438 * 9 8 7 11 11 C 1.34231 * 126.50067 * 180.46207 * 2 1 3 12 12 C 1.50699 * 125.03788 * 359.71744 * 11 2 1 13 13 H 1.08997 * 109.47074 * 173.70854 * 12 11 2 14 14 C 1.52996 * 109.46923 * 293.70927 * 12 11 2 15 15 C 1.50698 * 109.46981 * 53.70531 * 12 11 2 16 16 H 1.08004 * 120.00277 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00079 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00100 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47111 * 90.00157 * 19 17 15 21 21 H 1.48500 * 109.47172 * 210.00193 * 19 17 15 22 22 H 1.48497 * 109.46786 * 330.00496 * 19 17 15 23 23 H 1.09003 * 109.46513 * 95.47307 * 1 2 3 24 24 H 1.08994 * 109.47202 * 215.47283 * 1 2 3 25 25 H 1.08999 * 109.47372 * 335.47993 * 1 2 3 26 26 H 1.08003 * 120.12000 * 359.66576 * 4 3 2 27 27 H 1.08003 * 119.73507 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66875 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.10972 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47128 * 89.97019 * 10 9 8 31 31 H 1.09001 * 109.47236 * 209.97784 * 10 9 8 32 32 H 1.09003 * 109.47003 * 329.97431 * 10 9 8 33 33 H 1.09000 * 109.47259 * 186.79607 * 14 12 11 34 34 H 1.09009 * 109.46818 * 306.78744 * 14 12 11 35 35 H 1.08996 * 109.47449 * 66.79051 * 14 12 11 36 36 H 0.97003 * 120.00438 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3784 1.1776 0.0000 4 6 2.1486 2.5548 0.0049 5 6 3.2070 3.4190 0.0112 6 6 4.5095 2.9388 0.0112 7 6 4.7588 1.5840 0.0058 8 6 3.6963 0.6858 -0.0004 9 7 3.6171 -0.6887 -0.0062 10 6 4.7657 -1.5980 -0.0077 11 6 2.3055 -1.0790 -0.0087 12 6 1.8283 -2.5084 -0.0141 13 1 2.6817 -3.1759 -0.1336 14 6 1.1219 -2.8152 1.3078 15 6 0.8670 -2.7127 -1.1566 16 1 0.6260 -1.8898 -1.8133 17 6 0.2959 -3.9503 -1.3640 18 7 0.5897 -4.9524 -0.5647 19 14 -0.8964 -4.2034 -2.7797 20 1 -0.1455 -4.6227 -3.9903 21 1 -1.8789 -5.2563 -2.4172 22 1 -1.6124 -2.9324 -3.0570 23 1 -0.3632 -0.0980 -1.0230 24 1 -0.3633 -0.8369 0.5963 25 1 -0.3634 0.9350 0.4265 26 1 1.1380 2.9357 0.0045 27 1 3.0287 4.4842 0.0154 28 1 5.3357 3.6343 0.0158 29 1 5.7757 1.2202 0.0063 30 1 5.0489 -1.8273 1.0195 31 1 4.4991 -2.5194 -0.5255 32 1 5.6038 -1.1238 -0.5184 33 1 0.8838 -3.8779 1.3545 34 1 1.7766 -2.5528 2.1390 35 1 0.2023 -2.2336 1.3720 36 1 0.1876 -5.8231 -0.7104 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:22 Heat of formation + Delta-G solvation = 46.820265 kcal Electronic energy + Delta-G solvation = -17458.398183 eV Core-core repulsion = 14907.485983 eV Total energy + Delta-G solvation = -2550.912200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79511 -36.85507 -34.36966 -32.83660 -30.83194 -29.85269 -28.42047 -27.29130 -25.20689 -24.32502 -22.46965 -20.95346 -20.14348 -18.29133 -16.37336 -16.10721 -15.80742 -14.88778 -14.76198 -14.23479 -13.69293 -13.43298 -12.86022 -12.73123 -12.49446 -12.13889 -11.87487 -11.65920 -11.49500 -11.38835 -11.12334 -10.94962 -10.84781 -10.59829 -10.37898 -10.33075 -10.02565 -9.61098 -8.99389 -8.86614 -8.43045 -7.46189 -6.73726 -6.07883 -4.13093 1.67222 2.11493 3.27378 3.34361 3.37112 3.47528 3.52428 4.39016 4.41623 5.15179 5.23015 5.24844 5.38234 5.45355 5.62583 5.67057 5.83476 5.89850 6.02290 6.21752 6.27549 6.40725 6.54900 6.59797 6.72930 6.78014 6.82915 6.97655 7.05268 7.09710 7.20491 7.38875 7.42772 7.65794 7.83084 7.91453 8.04186 8.09619 8.34040 8.89033 9.51371 10.98581 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.007096 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.802402 B = 3944.908158 C = 4320.143157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.191 4.191 3 C -0.095 4.095 4 C -0.077 4.077 5 C -0.158 4.158 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.085 3.915 9 N -0.488 5.488 10 C 0.081 3.919 11 C 0.135 3.865 12 C 0.097 3.903 13 H 0.033 0.967 14 C -0.130 4.130 15 C -0.502 4.502 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.006 0.994 35 H 0.042 0.958 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 9.337 1.974 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.196 4.196 3 C -0.100 4.100 4 C -0.095 4.095 5 C -0.178 4.178 6 C -0.139 4.139 7 C -0.150 4.150 8 C -0.021 4.021 9 N -0.171 5.171 10 C -0.061 4.061 11 C 0.029 3.971 12 C 0.078 3.922 13 H 0.051 0.949 14 C -0.187 4.187 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.025 0.975 35 H 0.061 0.939 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.762 8.887 2.002 10.779 hybrid contribution -0.370 -0.227 -0.812 0.920 sum 5.393 8.660 1.190 10.271 Atomic orbital electron populations 1.20063 0.89801 1.00416 1.01615 1.19881 0.95132 0.89309 1.15278 1.19266 0.92361 0.93228 1.05158 1.20179 0.98550 0.91176 0.99638 1.20439 0.92599 0.98736 1.06008 1.20572 0.96573 0.93915 1.02848 1.19897 0.96052 0.92239 1.06791 1.18256 0.95447 0.83297 1.05107 1.43906 1.06291 1.03513 1.63359 1.21825 0.87386 0.94596 1.02303 1.21336 0.80326 0.98482 0.96948 1.17600 0.96018 0.83070 0.95545 0.94910 1.21794 0.98507 1.03857 0.94583 1.21031 1.25373 0.95996 1.11690 0.91864 1.24920 0.96681 0.95863 0.96361 1.69890 1.44050 1.01594 1.37506 0.86552 0.80897 0.78044 0.82362 1.20772 1.21191 1.19665 0.92474 0.90896 0.94195 0.86799 0.86985 0.86755 0.87228 0.92024 0.89256 0.91126 0.89714 0.97451 0.93933 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 8.92 36.01 0.32 -0.91 16 2 C -0.19 -4.12 5.98 -102.71 -0.61 -4.73 16 3 C -0.09 -1.90 6.35 -105.14 -0.67 -2.57 16 4 C -0.08 -1.31 10.05 -39.64 -0.40 -1.71 16 5 C -0.16 -2.36 9.97 -39.94 -0.40 -2.76 16 6 C -0.12 -1.75 10.01 -39.54 -0.40 -2.14 16 7 C -0.13 -2.08 9.97 -39.43 -0.39 -2.48 16 8 C 0.09 1.64 6.81 -83.99 -0.57 1.07 16 9 N -0.49 -9.73 3.18 -117.20 -0.37 -10.10 16 10 C 0.08 1.29 10.71 59.85 0.64 1.93 16 11 C 0.14 3.02 5.58 -81.77 -0.46 2.57 16 12 C 0.10 2.35 2.38 -92.93 -0.22 2.13 16 13 H 0.03 0.84 6.52 -51.93 -0.34 0.50 16 14 C -0.13 -3.04 8.69 37.16 0.32 -2.71 16 15 C -0.50 -13.18 7.44 -34.44 -0.26 -13.44 16 16 H 0.06 1.69 6.67 -52.48 -0.35 1.34 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.32 11.40 55.43 0.63 -23.69 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.06 1.16 7.57 -51.93 -0.39 0.77 16 24 H 0.07 1.51 5.36 -51.93 -0.28 1.23 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 27 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.48 6.82 -51.93 -0.35 1.13 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.08 2.14 6.28 -51.93 -0.33 1.82 16 34 H 0.01 0.14 8.14 -51.92 -0.42 -0.28 16 35 H 0.04 0.97 5.59 -51.93 -0.29 0.68 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -28.56 291.48 -8.40 -36.96 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.85 Total: 0.88 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.18 Total: -24.19 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.26 Total: -33.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.56 -8.40 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.777 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds