Wall clock time and date at job start Mon Mar 30 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.46488 * 126.50005 * 2 1 4 4 C 1.39631 * 134.02816 * 0.27985 * 3 2 1 5 5 C 1.36631 * 119.76156 * 179.61772 * 4 3 2 6 6 C 1.38826 * 120.53000 * 0.06992 * 5 4 3 7 7 C 1.37755 * 120.66419 * 359.96249 * 6 5 4 8 8 C 1.39129 * 119.77943 * 0.02562 * 7 6 5 9 9 N 1.37683 * 133.50481 * 180.02562 * 8 7 6 10 10 C 1.46500 * 125.06835 * 359.97438 * 9 8 7 11 11 C 1.34231 * 126.50067 * 180.46207 * 2 1 3 12 12 C 1.50699 * 125.03788 * 359.71744 * 11 2 1 13 13 H 1.08997 * 109.47074 * 173.70854 * 12 11 2 14 14 C 1.52996 * 109.46923 * 293.70927 * 12 11 2 15 15 C 1.50698 * 109.46981 * 53.70531 * 12 11 2 16 16 H 1.08004 * 120.00277 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00079 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00100 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47111 * 90.00157 * 19 17 15 21 21 H 1.48500 * 109.47172 * 210.00193 * 19 17 15 22 22 H 1.48497 * 109.46786 * 330.00496 * 19 17 15 23 23 H 1.09003 * 109.46513 * 95.47307 * 1 2 3 24 24 H 1.08994 * 109.47202 * 215.47283 * 1 2 3 25 25 H 1.08999 * 109.47372 * 335.47993 * 1 2 3 26 26 H 1.08003 * 120.12000 * 359.66576 * 4 3 2 27 27 H 1.08003 * 119.73507 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66875 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.10972 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47128 * 89.97019 * 10 9 8 31 31 H 1.09001 * 109.47236 * 209.97784 * 10 9 8 32 32 H 1.09003 * 109.47003 * 329.97431 * 10 9 8 33 33 H 1.09000 * 109.47259 * 186.79607 * 14 12 11 34 34 H 1.09009 * 109.46818 * 306.78744 * 14 12 11 35 35 H 1.08996 * 109.47449 * 66.79051 * 14 12 11 36 36 H 0.97003 * 120.00438 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3784 1.1776 0.0000 4 6 2.1486 2.5548 0.0049 5 6 3.2070 3.4190 0.0112 6 6 4.5095 2.9388 0.0112 7 6 4.7588 1.5840 0.0058 8 6 3.6963 0.6858 -0.0004 9 7 3.6171 -0.6887 -0.0062 10 6 4.7657 -1.5980 -0.0077 11 6 2.3055 -1.0790 -0.0087 12 6 1.8283 -2.5084 -0.0141 13 1 2.6817 -3.1759 -0.1336 14 6 1.1219 -2.8152 1.3078 15 6 0.8670 -2.7127 -1.1566 16 1 0.6260 -1.8898 -1.8133 17 6 0.2959 -3.9503 -1.3640 18 7 0.5897 -4.9524 -0.5647 19 14 -0.8964 -4.2034 -2.7797 20 1 -0.1455 -4.6227 -3.9903 21 1 -1.8789 -5.2563 -2.4172 22 1 -1.6124 -2.9324 -3.0570 23 1 -0.3632 -0.0980 -1.0230 24 1 -0.3633 -0.8369 0.5963 25 1 -0.3634 0.9350 0.4265 26 1 1.1380 2.9357 0.0045 27 1 3.0287 4.4842 0.0154 28 1 5.3357 3.6343 0.0158 29 1 5.7757 1.2202 0.0063 30 1 5.0489 -1.8273 1.0195 31 1 4.4991 -2.5194 -0.5255 32 1 5.6038 -1.1238 -0.5184 33 1 0.8838 -3.8779 1.3545 34 1 1.7766 -2.5528 2.1390 35 1 0.2023 -2.2336 1.3720 36 1 0.1876 -5.8231 -0.7104 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:22 Heat of formation + Delta-G solvation = 33.410672 kcal Electronic energy + Delta-G solvation = -17458.979667 eV Core-core repulsion = 14907.485983 eV Total energy + Delta-G solvation = -2551.493684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.21399 -38.20952 -36.14138 -34.39815 -32.65229 -31.10806 -29.93183 -28.71515 -27.22835 -25.79478 -24.01163 -22.31372 -21.67065 -19.82823 -18.27993 -17.49662 -17.29443 -16.61043 -16.17822 -15.73615 -15.08158 -14.71984 -14.65574 -14.22339 -13.86695 -13.61008 -13.53037 -13.32110 -13.05523 -12.91154 -12.84469 -12.71540 -12.37732 -12.35654 -12.04866 -11.79527 -11.67498 -11.37714 -10.89085 -10.45886 -10.24048 -8.84358 -8.24312 -8.08169 -6.22075 0.36697 0.84265 1.41152 1.43351 1.53067 1.95296 2.08682 2.45772 3.11374 3.18415 3.90145 3.97598 4.09353 4.24169 4.37955 4.40742 4.56751 4.62600 4.64614 4.75119 4.76972 4.92837 4.99703 5.04761 5.12611 5.16925 5.22257 5.33563 5.49190 5.55861 5.72511 5.74123 5.84655 5.97539 6.09497 6.18350 6.32599 6.55385 6.64419 6.83189 7.44846 8.94477 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.007096 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.802402 B = 3944.908158 C = 4320.143157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.205 4.205 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.152 4.152 6 C -0.107 4.107 7 C -0.137 4.137 8 C 0.067 3.933 9 N -0.496 5.496 10 C 0.077 3.923 11 C 0.102 3.898 12 C 0.102 3.898 13 H 0.011 0.989 14 C -0.117 4.117 15 C -0.510 4.510 16 H 0.051 0.949 17 C 0.021 3.979 18 N -0.916 5.916 19 Si 0.950 3.050 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.269 1.269 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.041 0.959 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 11.876 1.738 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.211 4.211 3 C -0.134 4.134 4 C -0.108 4.108 5 C -0.171 4.171 6 C -0.126 4.126 7 C -0.158 4.158 8 C -0.038 4.038 9 N -0.179 5.179 10 C -0.064 4.064 11 C -0.004 4.004 12 C 0.083 3.917 13 H 0.029 0.971 14 C -0.175 4.175 15 C -0.549 4.549 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.555 5.555 19 Si 0.775 3.225 20 H -0.205 1.205 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.889 11.431 1.768 13.463 hybrid contribution -0.627 -0.861 -0.720 1.285 sum 6.261 10.570 1.048 12.330 Atomic orbital electron populations 1.19995 0.89538 1.01040 1.00763 1.20176 0.95709 0.90298 1.14903 1.19508 0.92479 0.94134 1.07304 1.20468 1.00226 0.90254 0.99814 1.20908 0.92139 1.00276 1.03733 1.21122 0.97762 0.93856 0.99854 1.20299 0.96453 0.92554 1.06472 1.18703 0.96349 0.83141 1.05634 1.44023 1.06056 1.04460 1.63363 1.21996 0.87175 0.93798 1.03387 1.21005 0.82111 0.97447 0.99871 1.17364 0.94828 0.84444 0.95054 0.97066 1.21622 0.98683 1.02240 0.94975 1.21188 1.25780 0.95720 1.12167 0.93026 1.25584 0.98120 0.95672 0.98460 1.69996 1.44933 1.01852 1.38744 0.85675 0.79097 0.77960 0.79717 1.20514 1.20651 1.19392 0.93561 0.92399 0.91736 0.85537 0.83427 0.82744 0.84731 0.90679 0.90928 0.88168 0.91871 0.96316 0.93981 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.29 8.92 71.24 0.64 -1.65 16 2 C -0.20 -8.99 5.98 -18.63 -0.11 -9.11 16 3 C -0.13 -5.08 6.35 -20.20 -0.13 -5.21 16 4 C -0.09 -2.83 10.05 22.23 0.22 -2.61 16 5 C -0.15 -3.86 9.97 22.03 0.22 -3.64 16 6 C -0.11 -2.60 10.01 22.30 0.22 -2.38 16 7 C -0.14 -3.97 9.97 22.37 0.22 -3.75 16 8 C 0.07 2.52 6.81 39.03 0.27 2.78 16 9 N -0.50 -19.82 3.18 -524.70 -1.67 -21.49 16 10 C 0.08 2.45 10.71 127.77 1.37 3.81 16 11 C 0.10 4.71 5.58 40.86 0.23 4.93 16 12 C 0.10 5.16 2.38 -12.29 -0.03 5.13 16 13 H 0.01 0.61 6.52 -2.39 -0.02 0.59 16 14 C -0.12 -5.72 8.69 71.98 0.63 -5.09 16 15 C -0.51 -27.67 7.44 25.60 0.19 -27.48 16 16 H 0.05 2.86 6.67 -2.91 -0.02 2.84 16 17 C 0.02 1.11 5.30 84.66 0.45 1.56 16 18 N -0.92 -51.27 11.40 21.45 0.24 -51.02 16 19 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H 0.05 1.93 7.57 -2.39 -0.02 1.91 16 24 H 0.06 2.48 5.36 -2.39 -0.01 2.46 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 28 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.50 6.82 -2.39 -0.02 2.48 16 32 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 33 H 0.06 3.32 6.28 -2.39 -0.02 3.30 16 34 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.04 2.00 5.59 -2.39 -0.01 1.99 16 36 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -62.73 291.48 6.05 -56.68 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.07 Total: 13.27 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 4.38 Total: -42.69 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.42 Total: -72.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.73 6.05 -56.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.088 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds