Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.46480 * 126.50112 * 2 1 4 4 C 1.39629 * 134.03006 * 0.02562 * 3 2 1 5 5 C 1.36630 * 119.76439 * 179.97438 * 4 3 2 6 6 C 1.38830 * 120.52788 * 359.97438 * 5 4 3 7 7 C 1.37754 * 120.66364 * 359.97438 * 6 5 4 8 8 C 1.39121 * 119.77950 * 0.02562 * 7 6 5 9 9 N 1.37695 * 133.50590 * 179.97438 * 8 7 6 10 10 C 1.46497 * 125.06380 * 359.73064 * 9 8 7 11 11 C 1.34241 * 126.49980 * 179.97438 * 2 1 3 12 12 C 1.50705 * 125.03463 * 0.03978 * 11 2 1 13 13 H 1.08999 * 109.46451 * 179.97438 * 12 11 2 14 14 C 1.53000 * 109.46932 * 59.95678 * 12 11 2 15 15 C 1.50696 * 109.46998 * 299.95217 * 12 11 2 16 16 H 1.08001 * 120.00070 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99746 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00132 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00116 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46665 * 60.00203 * 19 17 15 21 21 H 1.48496 * 109.47185 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47077 * 300.00718 * 19 17 15 23 23 H 1.08997 * 109.47005 * 90.03028 * 1 2 3 24 24 H 1.09003 * 109.46985 * 210.02946 * 1 2 3 25 25 H 1.09001 * 109.46897 * 330.02145 * 1 2 3 26 26 H 1.08001 * 120.12157 * 359.97225 * 4 3 2 27 27 H 1.08000 * 119.73750 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66869 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.10533 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46752 * 90.02485 * 10 9 8 31 31 H 1.08995 * 109.47185 * 210.02272 * 10 9 8 32 32 H 1.08999 * 109.47201 * 330.03206 * 10 9 8 33 33 H 1.08999 * 109.47593 * 299.99349 * 14 12 11 34 34 H 1.08999 * 109.47254 * 60.00254 * 14 12 11 35 35 H 1.09005 * 109.46800 * 179.97438 * 14 12 11 36 36 H 0.97004 * 120.00399 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3784 1.1775 0.0000 4 6 2.1487 2.5547 0.0004 5 6 3.2070 3.4189 0.0008 6 6 4.5096 2.9386 0.0013 7 6 4.7589 1.5838 0.0019 8 6 3.6963 0.6858 0.0016 9 7 3.6170 -0.6889 0.0015 10 6 4.7656 -1.5981 -0.0037 11 6 2.3056 -1.0791 0.0005 12 6 1.8282 -2.5086 0.0003 13 1 2.6880 -3.1786 0.0003 14 6 0.9824 -2.7636 -1.2489 15 6 0.9956 -2.7603 1.2308 16 1 0.8284 -1.9646 1.9418 17 6 0.4464 -4.0060 1.4486 18 7 0.6496 -4.9747 0.5826 19 14 -0.5851 -4.3183 2.9743 20 1 -1.7560 -3.4048 2.9756 21 1 -1.0555 -5.7268 2.9740 22 1 0.2366 -4.0716 4.1864 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 1.1381 2.9357 0.0005 27 1 3.0288 4.4841 0.0016 28 1 5.3358 3.6342 0.0020 29 1 5.7758 1.2201 0.0027 30 1 5.0547 -1.8243 1.0228 31 1 4.4961 -2.5211 -0.5169 32 1 5.6009 -1.1255 -0.5205 33 1 0.1227 -2.0935 -1.2486 34 1 1.5847 -2.5815 -2.1389 35 1 0.6375 -3.7976 -1.2493 36 1 0.2635 -5.8513 0.7360 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = 45.299226 kcal Electronic energy + Delta-G solvation = -17455.749284 eV Core-core repulsion = 14904.771127 eV Total energy + Delta-G solvation = -2550.978157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79215 -36.85410 -34.38686 -32.84405 -30.83129 -29.85234 -28.40103 -27.28818 -25.21872 -24.32212 -22.46637 -20.93750 -20.15574 -18.27321 -16.40928 -16.10350 -15.83160 -14.89819 -14.73065 -14.23572 -13.67720 -13.42901 -12.83022 -12.70569 -12.48860 -12.04582 -11.93836 -11.67841 -11.48718 -11.43716 -11.12543 -10.90706 -10.83187 -10.63256 -10.34356 -10.29680 -10.09493 -9.63432 -9.04872 -8.86941 -8.42629 -7.45823 -6.74261 -6.08821 -4.15149 1.67515 2.11746 3.28416 3.32885 3.34667 3.47623 3.52804 4.37902 4.41551 5.15519 5.21826 5.22970 5.38455 5.45753 5.64049 5.68603 5.84851 5.90385 6.02501 6.23375 6.27582 6.41262 6.54942 6.59406 6.74726 6.76120 6.87193 6.97960 7.04421 7.09502 7.25640 7.35584 7.42814 7.65202 7.80313 7.93200 8.04244 8.10992 8.32715 8.86263 9.48996 10.96578 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.007047 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.477913 B = 3972.177930 C = 4282.148950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.193 4.193 3 C -0.095 4.095 4 C -0.077 4.077 5 C -0.158 4.158 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.085 3.915 9 N -0.487 5.487 10 C 0.083 3.917 11 C 0.137 3.863 12 C 0.097 3.903 13 H 0.033 0.967 14 C -0.134 4.134 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.006 0.994 35 H 0.088 0.912 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 9.280 -2.053 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.198 4.198 3 C -0.100 4.100 4 C -0.096 4.096 5 C -0.178 4.178 6 C -0.139 4.139 7 C -0.150 4.150 8 C -0.021 4.021 9 N -0.170 5.170 10 C -0.059 4.059 11 C 0.031 3.969 12 C 0.078 3.922 13 H 0.051 0.949 14 C -0.192 4.192 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.107 0.893 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.508 8.824 -2.082 10.608 hybrid contribution -0.279 -0.210 0.846 0.915 sum 5.228 8.614 -1.236 10.152 Atomic orbital electron populations 1.20167 0.89947 1.02351 1.00461 1.19860 0.95101 0.89324 1.15532 1.19266 0.92367 0.93235 1.05115 1.20175 0.98538 0.91177 0.99682 1.20439 0.92603 0.98733 1.05998 1.20572 0.96571 0.93914 1.02874 1.19897 0.96058 0.92239 1.06766 1.18258 0.95451 0.83291 1.05118 1.43900 1.06295 1.03511 1.63320 1.21806 0.87260 0.94237 1.02646 1.21342 0.80375 0.98445 0.96731 1.17596 0.95679 0.83088 0.95846 0.94923 1.21828 0.98750 1.04176 0.94399 1.20959 1.31353 0.96514 1.05393 0.92012 1.24924 0.96321 0.95941 0.96593 1.69865 1.45007 1.02668 1.35310 0.86605 0.80728 0.77200 0.83249 1.19989 1.21255 1.20303 0.93450 0.89356 0.93871 0.86816 0.86989 0.86755 0.87221 0.91719 0.89583 0.91215 0.94049 0.97445 0.89346 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 8.68 36.01 0.31 -1.12 16 2 C -0.19 -4.17 6.04 -102.71 -0.62 -4.79 16 3 C -0.09 -1.90 6.35 -105.14 -0.67 -2.57 16 4 C -0.08 -1.32 10.05 -39.64 -0.40 -1.72 16 5 C -0.16 -2.36 9.97 -39.94 -0.40 -2.76 16 6 C -0.12 -1.76 10.01 -39.54 -0.40 -2.15 16 7 C -0.13 -2.09 9.97 -39.43 -0.39 -2.48 16 8 C 0.08 1.64 6.81 -83.99 -0.57 1.07 16 9 N -0.49 -9.77 3.18 -117.19 -0.37 -10.14 16 10 C 0.08 1.32 10.66 59.85 0.64 1.96 16 11 C 0.14 3.08 5.56 -81.77 -0.45 2.62 16 12 C 0.10 2.36 2.38 -92.92 -0.22 2.13 16 13 H 0.03 0.83 6.56 -51.93 -0.34 0.49 16 14 C -0.13 -3.14 8.80 37.16 0.33 -2.81 16 15 C -0.50 -13.23 6.75 -34.44 -0.23 -13.46 16 16 H 0.06 1.66 7.34 -52.49 -0.39 1.27 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 19 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.87 7.79 -51.93 -0.40 0.47 16 24 H 0.09 1.92 5.65 -51.93 -0.29 1.62 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.39 6.89 -51.93 -0.36 1.03 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.04 0.93 5.86 -51.93 -0.30 0.63 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -28.47 291.92 -8.45 -36.92 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.92 Total: 1.18 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -3.17 Total: -24.47 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.25 Total: -33.71 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.47 -8.45 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.224 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds