Wall clock time and date at job start Mon Mar 30 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.46480 * 126.50112 * 2 1 4 4 C 1.39629 * 134.03006 * 0.02562 * 3 2 1 5 5 C 1.36630 * 119.76439 * 179.97438 * 4 3 2 6 6 C 1.38830 * 120.52788 * 359.97438 * 5 4 3 7 7 C 1.37754 * 120.66364 * 359.97438 * 6 5 4 8 8 C 1.39121 * 119.77950 * 0.02562 * 7 6 5 9 9 N 1.37695 * 133.50590 * 179.97438 * 8 7 6 10 10 C 1.46497 * 125.06380 * 359.73064 * 9 8 7 11 11 C 1.34241 * 126.49980 * 179.97438 * 2 1 3 12 12 C 1.50705 * 125.03463 * 0.03978 * 11 2 1 13 13 H 1.08999 * 109.46451 * 179.97438 * 12 11 2 14 14 C 1.53000 * 109.46932 * 59.95678 * 12 11 2 15 15 C 1.50696 * 109.46998 * 299.95217 * 12 11 2 16 16 H 1.08001 * 120.00070 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99746 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00132 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00116 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46665 * 60.00203 * 19 17 15 21 21 H 1.48496 * 109.47185 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47077 * 300.00718 * 19 17 15 23 23 H 1.08997 * 109.47005 * 90.03028 * 1 2 3 24 24 H 1.09003 * 109.46985 * 210.02946 * 1 2 3 25 25 H 1.09001 * 109.46897 * 330.02145 * 1 2 3 26 26 H 1.08001 * 120.12157 * 359.97225 * 4 3 2 27 27 H 1.08000 * 119.73750 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66869 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.10533 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46752 * 90.02485 * 10 9 8 31 31 H 1.08995 * 109.47185 * 210.02272 * 10 9 8 32 32 H 1.08999 * 109.47201 * 330.03206 * 10 9 8 33 33 H 1.08999 * 109.47593 * 299.99349 * 14 12 11 34 34 H 1.08999 * 109.47254 * 60.00254 * 14 12 11 35 35 H 1.09005 * 109.46800 * 179.97438 * 14 12 11 36 36 H 0.97004 * 120.00399 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3784 1.1775 0.0000 4 6 2.1487 2.5547 0.0004 5 6 3.2070 3.4189 0.0008 6 6 4.5096 2.9386 0.0013 7 6 4.7589 1.5838 0.0019 8 6 3.6963 0.6858 0.0016 9 7 3.6170 -0.6889 0.0015 10 6 4.7656 -1.5981 -0.0037 11 6 2.3056 -1.0791 0.0005 12 6 1.8282 -2.5086 0.0003 13 1 2.6880 -3.1786 0.0003 14 6 0.9824 -2.7636 -1.2489 15 6 0.9956 -2.7603 1.2308 16 1 0.8284 -1.9646 1.9418 17 6 0.4464 -4.0060 1.4486 18 7 0.6496 -4.9747 0.5826 19 14 -0.5851 -4.3183 2.9743 20 1 -1.7560 -3.4048 2.9756 21 1 -1.0555 -5.7268 2.9740 22 1 0.2366 -4.0716 4.1864 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 1.1381 2.9357 0.0005 27 1 3.0288 4.4841 0.0016 28 1 5.3358 3.6342 0.0020 29 1 5.7758 1.2201 0.0027 30 1 5.0547 -1.8243 1.0228 31 1 4.4961 -2.5211 -0.5169 32 1 5.6009 -1.1255 -0.5205 33 1 0.1227 -2.0935 -1.2486 34 1 1.5847 -2.5815 -2.1389 35 1 0.6375 -3.7976 -1.2493 36 1 0.2635 -5.8513 0.7360 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:24 Heat of formation + Delta-G solvation = 31.976686 kcal Electronic energy + Delta-G solvation = -17456.326993 eV Core-core repulsion = 14904.771127 eV Total energy + Delta-G solvation = -2551.555866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.21396 -38.21240 -36.15816 -34.40919 -32.64232 -31.11189 -29.91225 -28.71514 -27.23902 -25.79111 -24.00990 -22.29959 -21.68543 -19.81219 -18.32456 -17.50064 -17.30239 -16.61757 -16.16446 -15.73122 -15.05465 -14.69800 -14.66231 -14.15043 -13.85451 -13.58611 -13.52415 -13.38685 -13.02545 -12.90989 -12.82444 -12.76263 -12.39856 -12.30344 -12.09631 -11.79115 -11.67468 -11.39576 -10.94917 -10.44595 -10.24447 -8.84585 -8.25147 -8.07884 -6.23470 0.36635 0.84079 1.42766 1.43269 1.50963 1.95092 2.09223 2.45208 3.11279 3.16504 3.90129 3.97567 4.09766 4.24174 4.36451 4.41319 4.56625 4.62492 4.69703 4.74373 4.78053 4.94304 5.02556 5.06364 5.14020 5.17013 5.19288 5.35192 5.49177 5.53602 5.69835 5.74764 5.84484 5.98806 6.08714 6.19780 6.31426 6.55143 6.64326 6.80804 7.43094 8.93049 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.007047 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.477913 B = 3972.177930 C = 4282.148950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.206 4.206 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.152 4.152 6 C -0.107 4.107 7 C -0.137 4.137 8 C 0.067 3.933 9 N -0.496 5.496 10 C 0.079 3.921 11 C 0.103 3.897 12 C 0.103 3.897 13 H 0.011 0.989 14 C -0.122 4.122 15 C -0.512 4.512 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.914 5.914 19 Si 0.950 3.050 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.277 1.277 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 11.816 -1.778 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.212 4.212 3 C -0.134 4.134 4 C -0.108 4.108 5 C -0.171 4.171 6 C -0.126 4.126 7 C -0.158 4.158 8 C -0.039 4.039 9 N -0.179 5.179 10 C -0.062 4.062 11 C -0.003 4.003 12 C 0.084 3.916 13 H 0.029 0.971 14 C -0.180 4.180 15 C -0.550 4.550 16 H 0.067 0.933 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.203 1.203 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.152 0.848 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.581 11.365 -1.809 13.257 hybrid contribution -0.527 -0.838 0.740 1.236 sum 6.054 10.527 -1.069 12.191 Atomic orbital electron populations 1.20094 0.89558 1.01921 1.00802 1.20173 0.95752 0.90259 1.15017 1.19509 0.92473 0.94154 1.07279 1.20466 1.00219 0.90247 0.99822 1.20910 0.92138 1.00281 1.03734 1.21122 0.97771 0.93843 0.99872 1.20298 0.96452 0.92568 1.06479 1.18711 0.96380 0.83133 1.05654 1.44020 1.06072 1.04460 1.63356 1.21976 0.87234 0.93809 1.03200 1.21016 0.82137 0.97436 0.99759 1.17356 0.94584 0.84433 0.95260 0.97126 1.21662 0.98884 1.02646 0.94813 1.21109 1.31656 0.96282 1.05961 0.93282 1.25585 0.97336 0.95762 0.99065 1.69973 1.45803 1.02890 1.36629 0.85726 0.79376 0.77230 0.80070 1.19466 1.20672 1.20266 0.92662 0.91873 0.92034 0.85531 0.83419 0.82745 0.84754 0.91435 0.90654 0.87879 0.93837 0.96423 0.91548 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.68 8.68 71.24 0.62 -2.06 16 2 C -0.21 -9.03 6.04 -18.63 -0.11 -9.15 16 3 C -0.13 -5.09 6.35 -20.20 -0.13 -5.22 16 4 C -0.09 -2.83 10.05 22.23 0.22 -2.61 16 5 C -0.15 -3.88 9.97 22.04 0.22 -3.66 16 6 C -0.11 -2.62 10.01 22.30 0.22 -2.40 16 7 C -0.14 -4.00 9.97 22.37 0.22 -3.78 16 8 C 0.07 2.51 6.81 39.03 0.27 2.78 16 9 N -0.50 -19.97 3.18 -524.69 -1.67 -21.64 16 10 C 0.08 2.52 10.66 127.77 1.36 3.89 16 11 C 0.10 4.76 5.56 40.87 0.23 4.99 16 12 C 0.10 5.20 2.38 -12.29 -0.03 5.17 16 13 H 0.01 0.58 6.56 -2.39 -0.02 0.56 16 14 C -0.12 -5.95 8.80 71.98 0.63 -5.32 16 15 C -0.51 -27.80 6.75 25.60 0.17 -27.63 16 16 H 0.05 2.73 7.34 -2.91 -0.02 2.71 16 17 C 0.02 1.17 5.30 84.65 0.45 1.62 16 18 N -0.91 -51.01 11.32 21.45 0.24 -50.77 16 19 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H 0.05 2.07 7.79 -2.39 -0.02 2.05 16 24 H 0.06 2.83 5.65 -2.39 -0.01 2.82 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 2.53 6.89 -2.39 -0.02 2.51 16 32 H 0.10 2.52 8.10 -2.39 -0.02 2.50 16 33 H 0.04 2.04 5.86 -2.39 -0.01 2.02 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 3.51 6.07 -2.38 -0.01 3.50 16 36 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -62.59 291.92 6.01 -56.58 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.06 Total: 14.09 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.35 Total: -43.37 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.43 Total: -72.41 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.59 6.01 -56.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.556 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds