Wall clock time and date at job start Mon Mar 30 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38825 * 119.66646 * 2 1 4 4 C 1.36632 * 120.52355 * 179.73805 * 3 2 1 5 5 C 1.39628 * 119.76512 * 0.55630 * 4 3 2 6 6 C 1.46483 * 134.03040 * 179.72846 * 5 4 3 7 7 C 1.50701 * 126.50113 * 359.97438 * 6 5 4 8 8 C 1.53008 * 109.47108 * 84.97414 * 7 6 5 9 9 C 1.50694 * 109.46707 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00504 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99614 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00026 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46982 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47135 * 120.00265 * 13 11 9 16 16 H 1.48501 * 109.47088 * 240.00374 * 13 11 9 17 17 C 1.34237 * 106.99921 * 179.97438 * 6 5 4 18 18 N 1.36838 * 109.92837 * 359.97438 * 17 6 5 19 19 H 0.97000 * 125.06373 * 180.02562 * 18 17 6 20 20 C 1.37689 * 109.87312 * 0.02562 * 18 17 6 21 21 C 1.37755 * 119.66205 * 180.27675 * 2 1 3 22 22 C 1.50696 * 120.11023 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.47015 * 269.72693 * 1 2 3 24 24 H 1.09000 * 109.46646 * 29.71846 * 1 2 3 25 25 H 1.09000 * 109.47248 * 149.72563 * 1 2 3 26 26 H 1.08002 * 119.73897 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.11435 * 180.23562 * 4 3 2 28 28 H 1.08994 * 109.47022 * 204.97006 * 7 6 5 29 29 H 1.09001 * 109.47103 * 324.97279 * 7 6 5 30 30 H 1.08994 * 109.46846 * 299.99700 * 8 7 6 31 31 H 1.08995 * 109.46823 * 60.00087 * 8 7 6 32 32 H 0.97003 * 120.00033 * 180.02562 * 12 11 9 33 33 H 1.08001 * 125.03744 * 179.97438 * 17 6 5 34 34 H 1.09003 * 109.47236 * 90.00114 * 22 21 2 35 35 H 1.08997 * 109.47246 * 210.00136 * 22 21 2 36 36 H 1.09000 * 109.47431 * 330.00234 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 0.0054 5 6 4.2716 0.0252 -0.0008 6 6 5.6965 -0.3144 -0.0029 7 6 6.8494 0.6561 0.0011 8 6 7.1587 1.0746 1.4400 9 6 8.3119 2.0446 1.4440 10 1 8.7774 2.3341 0.5134 11 6 8.7721 2.5635 2.6357 12 7 8.2049 2.2115 3.7688 13 14 10.2012 3.7665 2.6407 14 1 10.6583 3.9979 1.2469 15 1 9.7627 5.0536 3.2375 16 1 11.3184 3.2047 3.4417 17 6 5.7806 -1.6541 -0.0091 18 7 4.5259 -2.2002 -0.0106 19 1 4.3318 -3.1506 -0.0144 20 6 3.5800 -1.1998 -0.0058 21 6 2.1888 -1.1970 -0.0058 22 6 1.4301 -2.4991 -0.0115 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3632 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5181 26 1 1.6445 2.1360 0.0004 27 1 4.0881 2.1690 0.0092 28 1 7.7271 0.1794 -0.4352 29 1 6.5852 1.5366 -0.5846 30 1 6.2810 1.5513 1.8763 31 1 7.4229 0.1942 2.0256 32 1 8.5284 2.5768 4.6072 33 1 6.7020 -2.2176 -0.0124 34 1 1.2468 -2.8083 -1.0405 35 1 2.0163 -3.2634 0.4986 36 1 0.4784 -2.3674 0.5033 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260850341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:37 Heat of formation + Delta-G solvation = 27.953226 kcal Electronic energy + Delta-G solvation = -16652.156087 eV Core-core repulsion = 14100.425750 eV Total energy + Delta-G solvation = -2551.730336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94295 -37.33737 -34.18080 -32.99822 -31.56405 -30.61995 -28.48623 -26.98341 -25.59640 -24.68155 -21.79698 -21.16146 -20.45697 -18.24297 -17.42688 -16.14421 -15.66939 -15.04101 -14.57387 -14.36730 -14.06672 -13.33686 -13.20870 -13.03197 -12.78376 -12.55618 -12.34435 -12.00718 -11.88323 -11.78222 -11.17996 -11.00923 -10.86746 -10.84876 -10.59895 -10.36293 -9.67195 -9.64479 -9.00242 -8.72270 -8.27609 -7.75000 -7.04278 -5.92343 -3.94922 1.45999 1.98299 3.17243 3.35193 3.42548 3.46859 3.49640 4.21728 4.52146 4.93596 5.05161 5.20510 5.27671 5.33180 5.42988 5.51975 5.54889 5.66457 5.69581 5.83317 5.87931 5.94707 6.04446 6.20595 6.39464 6.45298 6.68581 6.80344 6.93547 6.96201 7.10219 7.18286 7.36258 7.58465 7.79471 7.90517 7.98790 8.10601 8.50658 9.13375 9.68671 11.18650 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034790 B = 0.005029 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.626187 B = 5565.867197 C = 5999.068640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.153 4.153 4 C -0.058 4.058 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.045 4.045 8 C 0.030 3.970 9 C -0.519 4.519 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.895 5.895 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 C 0.024 3.976 18 N -0.599 5.599 19 H 0.408 0.592 20 C 0.102 3.898 21 C -0.110 4.110 22 C -0.106 4.106 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.166 0.834 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 -8.606 -8.375 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.076 4.076 3 C -0.173 4.173 4 C -0.076 4.076 5 C -0.107 4.107 6 C -0.140 4.140 7 C -0.083 4.083 8 C -0.007 4.007 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.100 4.100 18 N -0.203 5.203 19 H 0.244 0.756 20 C -0.006 4.006 21 C -0.113 4.113 22 C -0.163 4.163 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.142 0.858 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.183 0.817 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.375 -8.713 -8.192 17.942 hybrid contribution 0.837 0.205 0.281 0.906 sum -12.538 -8.508 -7.911 17.093 Atomic orbital electron populations 1.20750 0.91648 1.02236 1.01892 1.19309 0.95179 0.91935 1.01154 1.20413 0.93905 0.96932 1.06020 1.20360 0.93422 0.96982 0.96848 1.19172 0.93065 0.92217 1.06264 1.20839 0.93121 0.93466 1.06545 1.20175 0.91974 0.95053 1.01120 1.19056 0.96269 0.96055 0.89327 1.21344 1.15973 1.25780 0.92651 0.92609 1.25023 0.96948 0.96758 0.95713 1.69993 1.41539 1.44343 0.97591 0.86578 0.82537 0.81101 0.78031 1.19719 1.21076 1.21110 1.21561 0.87114 0.93957 1.07371 1.41596 1.04726 1.07333 1.66610 0.75615 1.18014 0.89976 0.88343 1.04275 1.18523 0.89382 0.95167 1.08222 1.20650 0.99897 0.94254 1.01517 0.91547 0.91773 0.91868 0.86473 0.85813 0.92634 0.92557 0.96501 0.96749 0.93166 0.81705 0.91894 0.92758 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.17 36.01 0.33 -0.78 16 2 C -0.07 -1.05 5.88 -104.58 -0.61 -1.66 16 3 C -0.15 -2.34 9.61 -39.94 -0.38 -2.72 16 4 C -0.06 -1.03 10.05 -39.64 -0.40 -1.43 16 5 C -0.10 -1.95 6.35 -105.14 -0.67 -2.62 16 6 C -0.13 -2.61 5.57 -102.71 -0.57 -3.18 16 7 C -0.05 -0.98 5.68 -27.88 -0.16 -1.14 16 8 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 9 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 13 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.02 0.39 11.73 -16.73 -0.20 0.19 16 18 N -0.60 -8.71 6.07 -10.65 -0.06 -8.78 16 19 H 0.41 4.41 8.87 -40.82 -0.36 4.04 16 20 C 0.10 1.69 6.95 -83.99 -0.58 1.10 16 21 C -0.11 -1.59 5.89 -104.47 -0.62 -2.20 16 22 C -0.11 -1.12 9.18 36.00 0.33 -0.79 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.56 6.66 -51.93 -0.35 0.21 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.53 7.99 -51.93 -0.42 0.12 16 36 H 0.07 0.63 6.68 -51.93 -0.35 0.29 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -32.82 303.17 -9.10 -41.92 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.24 Total: 0.47 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -4.08 Total: -28.28 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.67 Total: -35.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.82 -9.10 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.872 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds