Wall clock time and date at job start Mon Mar 30 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38825 * 119.66646 * 2 1 4 4 C 1.36632 * 120.52355 * 179.73805 * 3 2 1 5 5 C 1.39628 * 119.76512 * 0.55630 * 4 3 2 6 6 C 1.46483 * 134.03040 * 179.72846 * 5 4 3 7 7 C 1.50701 * 126.50113 * 359.97438 * 6 5 4 8 8 C 1.53008 * 109.47108 * 84.97414 * 7 6 5 9 9 C 1.50694 * 109.46707 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00504 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99614 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00026 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46982 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47135 * 120.00265 * 13 11 9 16 16 H 1.48501 * 109.47088 * 240.00374 * 13 11 9 17 17 C 1.34237 * 106.99921 * 179.97438 * 6 5 4 18 18 N 1.36838 * 109.92837 * 359.97438 * 17 6 5 19 19 H 0.97000 * 125.06373 * 180.02562 * 18 17 6 20 20 C 1.37689 * 109.87312 * 0.02562 * 18 17 6 21 21 C 1.37755 * 119.66205 * 180.27675 * 2 1 3 22 22 C 1.50696 * 120.11023 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.47015 * 269.72693 * 1 2 3 24 24 H 1.09000 * 109.46646 * 29.71846 * 1 2 3 25 25 H 1.09000 * 109.47248 * 149.72563 * 1 2 3 26 26 H 1.08002 * 119.73897 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.11435 * 180.23562 * 4 3 2 28 28 H 1.08994 * 109.47022 * 204.97006 * 7 6 5 29 29 H 1.09001 * 109.47103 * 324.97279 * 7 6 5 30 30 H 1.08994 * 109.46846 * 299.99700 * 8 7 6 31 31 H 1.08995 * 109.46823 * 60.00087 * 8 7 6 32 32 H 0.97003 * 120.00033 * 180.02562 * 12 11 9 33 33 H 1.08001 * 125.03744 * 179.97438 * 17 6 5 34 34 H 1.09003 * 109.47236 * 90.00114 * 22 21 2 35 35 H 1.08997 * 109.47246 * 210.00136 * 22 21 2 36 36 H 1.09000 * 109.47431 * 330.00234 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 0.0054 5 6 4.2716 0.0252 -0.0008 6 6 5.6965 -0.3144 -0.0029 7 6 6.8494 0.6561 0.0011 8 6 7.1587 1.0746 1.4400 9 6 8.3119 2.0446 1.4440 10 1 8.7774 2.3341 0.5134 11 6 8.7721 2.5635 2.6357 12 7 8.2049 2.2115 3.7688 13 14 10.2012 3.7665 2.6407 14 1 10.6583 3.9979 1.2469 15 1 9.7627 5.0536 3.2375 16 1 11.3184 3.2047 3.4417 17 6 5.7806 -1.6541 -0.0091 18 7 4.5259 -2.2002 -0.0106 19 1 4.3318 -3.1506 -0.0144 20 6 3.5800 -1.1998 -0.0058 21 6 2.1888 -1.1970 -0.0058 22 6 1.4301 -2.4991 -0.0115 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3632 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5181 26 1 1.6445 2.1360 0.0004 27 1 4.0881 2.1690 0.0092 28 1 7.7271 0.1794 -0.4352 29 1 6.5852 1.5366 -0.5846 30 1 6.2810 1.5513 1.8763 31 1 7.4229 0.1942 2.0256 32 1 8.5284 2.5768 4.6072 33 1 6.7020 -2.2176 -0.0124 34 1 1.2468 -2.8083 -1.0405 35 1 2.0163 -3.2634 0.4986 36 1 0.4784 -2.3674 0.5033 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260850341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:36 Heat of formation + Delta-G solvation = 9.533281 kcal Electronic energy + Delta-G solvation = -16652.954835 eV Core-core repulsion = 14100.425750 eV Total energy + Delta-G solvation = -2552.529085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19117 -38.49814 -36.03556 -34.50921 -33.28924 -31.68169 -30.15701 -28.09315 -26.85402 -26.41492 -23.24181 -22.91377 -21.62886 -19.71541 -18.70098 -18.31679 -16.90497 -16.50542 -16.19090 -15.65442 -15.21055 -14.84329 -14.60639 -14.25466 -14.24819 -13.87689 -13.53149 -13.42249 -13.12754 -12.96490 -12.81630 -12.71928 -12.42576 -12.27822 -12.01180 -11.80337 -11.63605 -11.45962 -11.13519 -10.54576 -10.07741 -8.98714 -8.35915 -8.15593 -6.29822 0.23438 0.74353 1.40322 1.41300 1.54934 1.82311 2.32129 2.42982 2.95862 3.14841 3.86100 3.96002 4.07345 4.21479 4.34104 4.41907 4.52402 4.60385 4.79832 4.81031 4.89719 4.93837 4.94991 4.97113 5.06051 5.10935 5.23928 5.27990 5.39071 5.52687 5.67284 5.72243 5.80011 5.87916 5.90636 5.99069 6.27020 6.33224 6.82430 6.88379 7.39573 8.94468 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034790 B = 0.005029 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.626187 B = 5565.867197 C = 5999.068640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.137 4.137 6 C -0.188 4.188 7 C -0.027 4.027 8 C 0.041 3.959 9 C -0.542 4.542 10 H 0.063 0.937 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.276 1.276 17 C 0.048 3.952 18 N -0.582 5.582 19 H 0.429 0.571 20 C 0.087 3.913 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.047 0.953 30 H -0.022 1.022 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.195 0.805 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 -9.882 -9.187 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.169 4.169 4 C -0.116 4.116 5 C -0.142 4.142 6 C -0.195 4.195 7 C -0.065 4.065 8 C 0.004 3.996 9 C -0.580 4.580 10 H 0.081 0.919 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.078 4.078 18 N -0.187 5.187 19 H 0.268 0.732 20 C -0.021 4.021 21 C -0.111 4.111 22 C -0.161 4.161 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.155 0.845 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.066 0.934 30 H -0.003 1.003 31 H 0.007 0.993 32 H 0.071 0.929 33 H 0.212 0.788 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.455 -10.020 -9.022 19.767 hybrid contribution 1.066 0.562 0.541 1.321 sum -13.389 -9.458 -8.482 18.456 Atomic orbital electron populations 1.20817 0.88424 1.03886 1.03026 1.19820 0.97481 0.91167 0.99888 1.20733 0.92938 0.98784 1.04401 1.20427 0.94868 0.96300 0.99995 1.19456 0.93330 0.93798 1.07617 1.20718 0.92923 0.94629 1.11226 1.19807 0.93667 0.95671 0.97343 1.18869 0.94208 0.94349 0.92158 1.21775 1.16616 1.26370 0.93196 0.91923 1.26024 1.00041 0.98715 0.95124 1.70140 1.43355 1.45757 0.98412 0.85366 0.78551 0.78222 0.78702 1.18350 1.20496 1.20183 1.21904 0.88693 0.93151 1.04024 1.41528 1.03694 1.08166 1.65304 0.73162 1.18280 0.91131 0.87801 1.04856 1.19058 0.88698 0.97275 1.06117 1.20742 1.00240 0.92075 1.03054 0.90474 0.90613 0.89850 0.84513 0.87757 0.91508 0.93425 1.00323 0.99349 0.92861 0.78844 0.90094 0.91886 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.17 71.24 0.65 -1.14 16 2 C -0.08 -2.17 5.88 -19.84 -0.12 -2.28 16 3 C -0.15 -4.60 9.61 22.03 0.21 -4.38 16 4 C -0.10 -3.71 10.05 22.23 0.22 -3.49 16 5 C -0.14 -5.46 6.35 -20.20 -0.13 -5.59 16 6 C -0.19 -7.67 5.57 -18.63 -0.10 -7.77 16 7 C -0.03 -1.23 5.68 29.85 0.17 -1.06 16 8 C 0.04 2.36 4.96 29.85 0.15 2.50 16 9 C -0.54 -32.23 9.11 25.60 0.23 -32.00 16 10 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 11 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 12 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 13 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 C 0.05 1.55 11.73 83.00 0.97 2.52 16 18 N -0.58 -16.04 6.07 -187.60 -1.14 -17.18 16 19 H 0.43 8.08 8.87 -92.71 -0.82 7.26 16 20 C 0.09 2.84 6.95 39.03 0.27 3.11 16 21 C -0.11 -2.92 5.89 -19.77 -0.12 -3.03 16 22 C -0.10 -1.81 9.18 71.23 0.65 -1.16 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 25 H 0.08 1.10 6.66 -2.39 -0.02 1.09 16 26 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H -0.02 -1.38 8.14 -2.39 -0.02 -1.39 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.00 7.99 -2.39 -0.02 0.98 16 36 H 0.09 1.21 6.68 -2.39 -0.02 1.20 16 Total: -1.00 -74.37 303.17 4.96 -69.41 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.25 Total: 12.73 kcal Atomic # 6 Polarization: -56.95 SS G_CDS: 3.54 Total: -53.41 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -0.85 Total: -76.30 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.37 4.96 -69.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.944 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds