Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47676 * 2 1 4 4 C 1.38903 * 125.35718 * 269.97824 * 3 2 1 5 5 C 1.40885 * 126.93149 * 0.07172 * 4 3 2 6 6 H 1.07994 * 120.00534 * 30.94921 * 5 4 3 7 7 C 1.39748 * 119.99821 * 210.95812 * 5 4 3 8 8 N 1.31049 * 120.00168 * 19.44790 * 7 5 4 9 9 Si 1.86799 * 119.99828 * 199.45295 * 7 5 4 10 10 H 1.48507 * 109.47145 * 89.99906 * 9 7 5 11 11 H 1.48501 * 109.46941 * 209.99678 * 9 7 5 12 12 H 1.48495 * 109.47303 * 329.99646 * 9 7 5 13 13 C 1.47672 * 106.13554 * 180.02562 * 4 3 2 14 14 C 1.39194 * 133.77705 * 180.02562 * 13 4 3 15 15 C 1.37877 * 119.69160 * 179.97438 * 14 13 4 16 16 C 1.38672 * 120.25448 * 359.69709 * 15 14 13 17 17 C 1.37858 * 120.62378 * 0.60341 * 16 15 14 18 18 C 1.50694 * 120.01915 * 179.68795 * 17 16 15 19 19 C 1.39124 * 119.96794 * 359.41178 * 17 16 15 20 20 N 1.35640 * 125.35665 * 90.01140 * 3 2 1 21 21 C 1.46496 * 124.69391 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.46683 * 300.00335 * 1 2 3 23 23 H 1.09005 * 109.47346 * 59.99705 * 1 2 3 24 24 H 1.08991 * 109.47675 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46683 * 239.99665 * 2 1 3 26 26 H 1.09001 * 109.46633 * 120.00284 * 2 1 3 27 27 H 0.96993 * 119.99956 * 175.21296 * 8 7 5 28 28 H 1.08000 * 120.15212 * 0.02562 * 14 13 4 29 29 H 1.08007 * 119.87280 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.69149 * 180.30907 * 16 15 14 31 31 H 1.09004 * 109.47133 * 269.72411 * 18 17 16 32 32 H 1.09005 * 109.47514 * 149.72447 * 18 17 16 33 33 H 1.09001 * 109.47268 * 29.72098 * 18 17 16 34 34 H 1.09008 * 109.46869 * 270.01934 * 21 20 3 35 35 H 1.09001 * 109.47062 * 30.01579 * 21 20 3 36 36 H 1.08999 * 109.47648 * 150.01912 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3009 2.1784 -1.1328 5 6 2.1571 1.7746 -2.4749 6 1 1.3933 1.0606 -2.7452 7 6 3.0030 2.2980 -3.4564 8 7 4.1433 2.8460 -3.1145 9 14 2.5084 2.2165 -5.2559 10 1 1.7445 3.4383 -5.6152 11 1 3.7266 2.1281 -6.1006 12 1 1.6610 1.0183 -5.4826 13 6 2.7662 3.4928 -0.6467 14 6 3.1798 4.6621 -1.2786 15 6 3.5639 5.7484 -0.5215 16 6 3.5332 5.6810 0.8632 17 6 3.1315 4.5269 1.5014 18 6 3.1100 4.4663 3.0069 19 6 2.7404 3.4200 0.7547 20 7 2.2944 2.1606 1.1062 21 6 2.1275 1.6895 2.4833 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 4.7615 3.1465 -3.7988 28 1 3.1989 4.7183 -2.3570 29 1 3.8858 6.6570 -1.0088 30 1 3.8313 6.5390 1.4474 31 1 4.0738 4.1093 3.3700 32 1 2.3241 3.7845 3.3320 33 1 2.9166 5.4612 3.4079 34 1 1.1171 1.9154 2.8246 35 1 2.2915 0.6126 2.5212 36 1 2.8494 2.1900 3.1286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = 28.553414 kcal Electronic energy + Delta-G solvation = -17675.190834 eV Core-core repulsion = 15123.486524 eV Total energy + Delta-G solvation = -2551.704310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64183 -37.83882 -35.82153 -33.97460 -33.55871 -31.73417 -29.36229 -28.60723 -27.03337 -25.27731 -24.24258 -22.32144 -21.29286 -20.18047 -18.19326 -17.29849 -16.68648 -16.36355 -15.99981 -15.74227 -15.02886 -14.71321 -14.38515 -14.15309 -13.98943 -13.84998 -13.62985 -13.42637 -12.91532 -12.81479 -12.77222 -12.72264 -12.51370 -11.98474 -11.90252 -11.74262 -11.54537 -11.45428 -11.06233 -10.74227 -9.74895 -8.54910 -8.42017 -8.00688 -5.85823 0.63848 1.10081 1.36924 1.41454 1.51237 2.20227 2.33654 2.52654 3.18047 3.62323 4.14864 4.20088 4.28405 4.32611 4.35453 4.48694 4.51126 4.63702 4.68408 4.71116 4.86505 4.89702 4.97253 5.05046 5.10157 5.21823 5.31636 5.34396 5.45227 5.51402 5.54852 5.70672 5.94578 6.04449 6.28611 6.50175 6.54747 6.92404 7.02886 7.26967 7.34259 8.65495 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.010849 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.893798 B = 2580.190528 C = 3817.733260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.021 4.021 3 C -0.102 4.102 4 C 0.015 3.985 5 C -0.485 4.485 6 H 0.066 0.934 7 C 0.037 3.963 8 N -0.843 5.843 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.261 1.261 13 C -0.138 4.138 14 C -0.049 4.049 15 C -0.199 4.199 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.102 4.102 19 C 0.076 3.924 20 N -0.477 5.477 21 C 0.075 3.925 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.274 0.726 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 0.039 9.157 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 C -0.206 4.206 4 C 0.009 3.991 5 C -0.518 4.518 6 H 0.084 0.916 7 C -0.174 4.174 8 N -0.473 5.473 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.185 1.185 13 C -0.144 4.144 14 C -0.068 4.068 15 C -0.219 4.219 16 C -0.132 4.132 17 C -0.138 4.138 18 C -0.158 4.158 19 C -0.032 4.032 20 N -0.162 5.162 21 C -0.066 4.066 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.767 -0.027 9.382 9.782 hybrid contribution 0.100 0.039 -1.400 1.404 sum -2.667 0.012 7.982 8.416 Atomic orbital electron populations 1.21649 0.94908 1.01537 1.00783 1.19642 0.95684 0.89355 1.01267 1.20753 1.19309 0.95584 0.84936 1.18245 0.98229 0.90002 0.92590 1.18653 1.16624 1.25054 0.91507 0.91571 1.26362 0.93863 0.93034 1.04117 1.70039 1.07128 1.33985 1.36128 0.85515 0.78507 0.79325 0.78119 1.19752 1.20012 1.18456 1.19602 1.06736 0.95520 0.92556 1.20612 0.95529 0.91987 0.98657 1.20926 1.07692 0.98617 0.94674 1.20743 1.01461 0.97155 0.93823 1.19125 1.06315 0.91896 0.96460 1.20839 1.02031 1.03431 0.89489 1.18387 1.03547 0.87535 0.93772 1.43004 1.57647 1.09681 1.05888 1.22154 1.02573 1.01320 0.80584 0.93267 0.94714 0.90729 0.92395 0.91246 0.91586 0.88858 0.85942 0.83923 0.91348 0.91322 0.90085 0.91490 0.89883 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.89 71.98 0.71 -3.64 16 2 C -0.02 -0.82 5.90 29.85 0.18 -0.65 16 3 C -0.10 -4.88 6.21 42.13 0.26 -4.62 16 4 C 0.02 0.85 5.72 -19.98 -0.11 0.74 16 5 C -0.49 -27.54 8.85 23.28 0.21 -27.34 16 6 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 7 C 0.04 2.02 4.89 85.17 0.42 2.43 16 8 N -0.84 -47.72 10.31 21.80 0.22 -47.50 16 9 Si 0.96 41.92 29.60 68.60 2.03 43.95 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 C -0.14 -7.54 5.78 -20.04 -0.12 -7.65 16 14 C -0.05 -2.57 8.75 22.41 0.20 -2.37 16 15 C -0.20 -8.66 10.03 22.29 0.22 -8.43 16 16 C -0.11 -4.32 9.66 22.28 0.22 -4.10 16 17 C -0.13 -5.31 5.90 -19.74 -0.12 -5.42 16 18 C -0.10 -2.82 8.72 71.23 0.62 -2.20 16 19 C 0.08 3.60 6.71 38.87 0.26 3.86 16 20 N -0.48 -20.52 3.15 -521.47 -1.64 -22.16 16 21 C 0.07 2.23 9.44 127.77 1.21 3.43 16 22 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.41 7.91 -2.38 -0.02 2.39 16 26 H 0.07 2.27 6.88 -2.39 -0.02 2.25 16 27 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.09 5.17 6.32 -2.91 -0.02 5.16 16 29 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 1.77 5.40 -2.38 -0.01 1.76 16 33 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.19 6.84 -2.39 -0.02 2.18 16 36 H 0.09 2.39 5.56 -2.39 -0.01 2.38 16 Total: -1.00 -67.34 290.90 5.83 -61.51 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.07 Total: 20.17 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 4.15 Total: -55.97 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.42 Total: -69.66 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.34 5.83 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.068 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds