Wall clock time and date at job start Mon Mar 30 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.46713 * 2 1 4 4 C 1.38830 * 119.73459 * 90.00305 * 3 2 1 5 5 C 1.37752 * 120.66159 * 179.74162 * 4 3 2 6 6 C 1.39121 * 119.78016 * 0.25421 * 5 4 3 7 7 C 1.40662 * 119.33816 * 0.02562 * 6 5 4 8 8 C 1.46485 * 106.04024 * 179.97438 * 7 6 5 9 9 C 1.34236 * 106.99877 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.03941 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47040 * 85.02282 * 10 9 8 12 12 H 1.07998 * 120.00113 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99856 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00343 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47279 * 90.00354 * 15 13 11 17 17 H 1.48504 * 109.47010 * 210.00500 * 15 13 11 18 18 H 1.48497 * 109.46800 * 330.00122 * 15 13 11 19 19 N 1.36834 * 109.92883 * 0.02562 * 9 8 7 20 20 C 1.46505 * 125.06298 * 180.02562 * 19 9 8 21 21 C 1.36632 * 119.73767 * 270.27919 * 3 2 1 22 22 H 1.08993 * 109.47595 * 59.99885 * 1 2 3 23 23 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47007 * 299.99723 * 1 2 3 25 25 H 1.08998 * 109.46567 * 240.00439 * 2 1 3 26 26 H 1.08993 * 109.47595 * 120.00115 * 2 1 3 27 27 H 1.08002 * 119.67056 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.10718 * 180.23380 * 5 4 3 29 29 H 1.07999 * 126.50366 * 179.97438 * 8 7 6 30 30 H 1.09005 * 109.47234 * 205.02727 * 10 9 8 31 31 H 1.09004 * 109.47139 * 325.02283 * 10 9 8 32 32 H 0.96997 * 120.00413 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.46536 * 270.01676 * 20 19 9 34 34 H 1.08992 * 109.47231 * 30.01947 * 20 19 9 35 35 H 1.09003 * 109.46954 * 150.02192 * 20 19 9 36 36 H 1.08001 * 120.11442 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2618 2.0700 1.2055 5 6 2.7258 3.3668 1.2278 6 6 2.9626 4.0366 0.0317 7 6 2.7229 3.3764 -1.1871 8 6 3.0631 4.3356 -2.2407 9 6 3.4670 5.4613 -1.6311 10 6 3.9140 6.7152 -2.3376 11 6 2.7105 7.5555 -2.6791 12 1 1.7210 7.2158 -2.4110 13 6 2.8728 8.7585 -3.3329 14 7 4.0778 9.1725 -3.6589 15 14 1.3811 9.8005 -3.7556 16 1 1.0943 10.7318 -2.6352 17 1 1.6555 10.5800 -4.9894 18 1 0.2079 8.9178 -3.9784 19 7 3.4139 5.3012 -0.2732 20 6 3.7814 6.3235 0.7097 21 6 2.2527 2.0617 -1.1864 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.0790 1.5516 2.1352 28 1 2.9049 3.8620 2.1708 29 1 3.0007 4.1688 -3.3059 30 1 4.5797 7.2816 -1.6862 31 1 4.4421 6.4479 -3.2529 32 1 4.1920 10.0186 -4.1191 33 1 4.8405 6.2319 0.9504 34 1 3.5872 7.3126 0.2952 35 1 3.1899 6.1864 1.6150 36 1 2.0680 1.5517 -2.1203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:06 Heat of formation + Delta-G solvation = 21.254270 kcal Electronic energy + Delta-G solvation = -16707.549471 eV Core-core repulsion = 14155.528647 eV Total energy + Delta-G solvation = -2552.020825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17691 -38.69892 -35.45894 -34.13536 -33.72132 -31.64648 -30.38607 -28.35942 -26.95394 -25.38296 -24.07987 -22.51731 -21.26417 -20.50708 -18.58906 -17.82224 -17.00093 -16.40461 -16.18436 -15.95628 -15.03685 -15.02480 -14.42073 -14.30037 -14.10743 -13.98607 -13.71166 -13.50672 -13.34786 -13.07822 -12.90753 -12.65291 -12.59926 -12.03886 -11.90986 -11.83495 -11.67916 -11.46479 -11.33404 -10.65735 -10.43881 -8.81558 -8.44163 -8.21322 -6.39333 0.32130 0.77692 1.37689 1.39130 1.50626 1.90182 2.06180 2.39337 3.03109 3.05902 3.81837 3.97858 3.99479 4.13398 4.26211 4.39796 4.42489 4.59132 4.60646 4.66278 4.71018 4.78994 4.91618 4.94697 5.09110 5.15920 5.17083 5.22959 5.30104 5.35605 5.48560 5.60826 5.66581 5.88718 5.98346 6.06409 6.15909 6.43428 6.58119 6.70297 7.29908 8.83419 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032945 B = 0.005279 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.685761 B = 5302.383582 C = 5634.797765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.065 3.935 7 C -0.125 4.125 8 C -0.252 4.252 9 C 0.112 3.888 10 C 0.083 3.917 11 C -0.530 4.530 12 H 0.048 0.952 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.964 3.036 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.271 1.271 19 N -0.489 5.489 20 C 0.078 3.922 21 C -0.089 4.089 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -14.107 10.712 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.150 4.150 6 C -0.041 4.041 7 C -0.129 4.129 8 C -0.276 4.276 9 C 0.004 3.996 10 C 0.045 3.955 11 C -0.568 4.568 12 H 0.067 0.933 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.789 3.211 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.173 5.173 20 C -0.063 4.063 21 C -0.108 4.108 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.171 0.829 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.975 -13.694 10.849 17.917 hybrid contribution -0.302 1.173 -0.770 1.435 sum -4.277 -12.521 10.080 16.633 Atomic orbital electron populations 1.21747 0.94654 1.02210 1.01600 1.20479 0.96155 0.90893 1.03507 1.19637 1.01920 0.97736 0.92187 1.20965 0.99466 0.93267 0.98474 1.20278 1.04618 0.95724 0.94416 1.18696 1.03398 0.85636 0.96346 1.19477 1.05360 0.95580 0.92526 1.21457 1.14269 0.93768 0.98112 1.21035 0.98955 0.97146 0.82480 1.17754 0.96115 0.87694 0.93922 1.21207 0.92747 1.04391 1.38487 0.93338 1.25817 0.98993 0.98671 0.95070 1.70048 1.23128 1.22242 1.40933 0.85456 0.79100 0.78457 0.78120 1.19462 1.20185 1.19562 1.43994 1.56455 1.11469 1.05382 1.22012 1.01831 0.90780 0.91697 1.20264 0.99743 0.91899 0.98847 0.93933 0.90884 0.92712 0.90948 0.89500 0.82892 0.84450 0.84794 0.96642 0.96148 0.92289 0.90506 0.90912 0.88099 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.07 -1.36 6.04 29.85 0.18 -1.18 16 3 C -0.11 -2.98 5.10 -20.10 -0.10 -3.08 16 4 C -0.10 -2.56 9.66 22.30 0.22 -2.35 16 5 C -0.13 -3.80 9.96 22.37 0.22 -3.58 16 6 C 0.06 2.45 6.81 39.03 0.27 2.72 16 7 C -0.12 -4.99 6.37 -20.20 -0.13 -5.12 16 8 C -0.25 -11.46 10.95 23.51 0.26 -11.20 16 9 C 0.11 5.32 6.02 40.86 0.25 5.56 16 10 C 0.08 4.44 4.97 29.10 0.14 4.59 16 11 C -0.53 -30.25 9.09 25.60 0.23 -30.02 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 13 C 0.01 0.77 5.46 84.65 0.46 1.23 16 14 N -0.92 -54.28 13.29 21.45 0.28 -53.99 16 15 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 N -0.49 -20.06 3.18 -524.69 -1.67 -21.73 16 20 C 0.08 2.56 10.56 127.77 1.35 3.91 16 21 C -0.09 -2.90 9.68 22.23 0.22 -2.68 16 22 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 26 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.13 5.93 8.06 -2.91 -0.02 5.90 16 30 H 0.02 0.84 7.34 -2.38 -0.02 0.83 16 31 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.69 7.40 -2.39 -0.02 2.67 16 35 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 36 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -66.00 305.88 5.96 -60.04 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.04 Total: 12.71 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 4.27 Total: -42.98 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.38 Total: -75.72 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.00 5.96 -60.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.296 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds