Wall clock time and date at job start Mon Mar 30 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47161 * 2 1 4 4 C 1.38831 * 119.73439 * 270.02039 * 3 2 1 5 5 C 1.37747 * 120.67058 * 179.97438 * 4 3 2 6 6 C 1.39131 * 119.77571 * 0.02562 * 5 4 3 7 7 N 1.37685 * 133.50742 * 180.02562 * 6 5 4 8 8 H 0.97003 * 125.06328 * 359.97438 * 7 6 5 9 9 C 1.36831 * 109.87415 * 179.71359 * 7 6 5 10 10 C 1.50701 * 125.03981 * 180.29845 * 9 7 6 11 11 H 1.08993 * 109.47280 * 155.16613 * 10 9 7 12 12 C 1.52996 * 109.47002 * 275.16998 * 10 9 7 13 13 C 1.50697 * 109.46593 * 35.16705 * 10 9 7 14 14 H 1.08006 * 120.00370 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00100 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99426 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00706 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46698 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47362 * 119.99996 * 17 15 13 20 20 H 1.48501 * 109.47357 * 240.00666 * 17 15 13 21 21 C 1.34242 * 109.92845 * 0.44758 * 9 7 6 22 22 C 1.40670 * 119.33090 * 359.97438 * 6 5 4 23 23 C 1.36620 * 119.73823 * 89.99935 * 3 2 1 24 24 H 1.08994 * 109.47247 * 60.00308 * 1 2 3 25 25 H 1.09006 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47362 * 300.00177 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99413 * 2 1 3 28 28 H 1.09005 * 109.46845 * 119.99980 * 2 1 3 29 29 H 1.08005 * 119.66477 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.11351 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46749 * 179.97438 * 12 10 9 32 32 H 1.08995 * 109.47123 * 299.99569 * 12 10 9 33 33 H 1.09002 * 109.47226 * 59.99799 * 12 10 9 34 34 H 0.97006 * 119.99649 * 179.97438 * 16 15 13 35 35 H 1.08002 * 126.50514 * 179.83712 * 21 9 7 36 36 H 1.07998 * 120.11857 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2614 2.0701 -1.2055 5 6 2.7200 3.3688 -1.2280 6 6 2.9573 4.0386 -0.0318 7 7 3.4041 5.3047 0.2731 8 1 3.6432 5.9831 -0.3778 9 6 3.4552 5.4655 1.6310 10 6 3.8905 6.7234 2.3375 11 1 3.4415 6.7566 3.3301 12 6 5.4150 6.7342 2.4667 13 6 3.4451 7.9248 1.5443 14 1 2.9008 7.7909 0.6210 15 6 3.7315 9.1951 1.9976 16 7 4.3938 9.3581 3.1221 17 14 3.1801 10.6844 1.0140 18 1 2.4589 10.2340 -0.2036 19 1 2.2750 11.5187 1.8447 20 1 4.3674 11.4842 0.6192 21 6 3.0631 4.3356 2.2406 22 6 2.7235 3.3762 1.1869 23 6 2.2582 2.0597 1.1863 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.0774 1.5520 -2.1351 30 1 2.8948 3.8655 -2.1710 31 1 5.7298 7.6442 2.9774 32 1 5.7371 5.8652 3.0404 33 1 5.8640 6.7010 1.4740 34 1 4.5957 10.2518 3.4408 35 1 3.0041 4.1675 3.3058 36 1 2.0778 1.5483 2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260870833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:52 Heat of formation + Delta-G solvation = 27.627024 kcal Electronic energy + Delta-G solvation = -16692.949749 eV Core-core repulsion = 14141.205268 eV Total energy + Delta-G solvation = -2551.744481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65883 -37.39092 -34.33536 -32.79840 -31.29670 -30.70132 -28.14251 -27.34172 -25.28757 -23.43802 -22.49365 -20.94648 -20.03375 -19.14640 -17.09977 -16.48352 -15.18029 -15.03608 -14.59560 -13.95654 -13.90431 -13.42378 -13.19310 -12.95468 -12.74908 -12.50184 -12.30001 -12.07898 -11.59248 -11.11932 -11.06365 -11.01212 -10.86352 -10.60982 -10.41438 -10.31083 -10.27916 -9.75212 -9.17430 -9.04822 -8.54030 -7.43853 -6.99739 -6.16598 -4.25764 1.65381 2.07693 3.19557 3.28425 3.30685 3.54278 3.89986 4.29697 4.33803 5.00339 5.04274 5.15647 5.30709 5.43941 5.49002 5.62701 5.77428 5.83498 5.93246 5.96494 6.05211 6.25698 6.34063 6.40098 6.53694 6.62110 6.70386 6.85877 6.98377 7.03914 7.09910 7.29453 7.37914 7.56784 7.68622 7.87923 7.95455 8.21312 8.33498 8.75276 9.40845 10.88963 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041092 B = 0.005027 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.241404 B = 5568.420207 C = 5848.031269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.080 3.920 7 N -0.581 5.581 8 H 0.415 0.585 9 C 0.156 3.844 10 C 0.087 3.913 11 H 0.054 0.946 12 C -0.131 4.131 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.255 4.255 22 C -0.093 4.093 23 C -0.078 4.078 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.137 0.863 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -12.881 -5.632 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.028 4.028 7 N -0.183 5.183 8 H 0.253 0.747 9 C 0.046 3.954 10 C 0.068 3.932 11 H 0.072 0.928 12 C -0.189 4.189 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.278 4.278 22 C -0.098 4.098 23 C -0.096 4.096 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.205 -12.625 -5.571 14.167 hybrid contribution -0.188 1.277 -0.830 1.534 sum -3.393 -11.348 -6.401 13.463 Atomic orbital electron populations 1.21758 0.95429 1.00933 1.02215 1.20398 0.95645 0.93204 1.01983 1.19164 1.03897 0.96179 0.92968 1.20441 1.02005 0.93941 0.96997 1.19931 1.04902 0.95084 0.94713 1.18319 1.02717 0.86544 0.95178 1.41961 1.57332 1.11417 1.07555 0.74718 1.21406 0.95029 0.97366 0.81620 1.17743 0.93574 0.86271 0.95572 0.92794 1.21758 0.96775 1.01122 0.99227 1.21047 1.36584 0.90327 1.08274 0.92620 1.24931 0.94677 0.98971 0.94982 1.69881 1.39237 1.22525 1.20490 0.86498 0.78476 0.82690 0.80129 1.19841 1.20787 1.20870 1.21338 1.15764 0.93133 0.97605 1.19259 1.03469 0.94238 0.92871 1.20007 0.99668 0.92870 0.97099 0.92748 0.93048 0.92607 0.91749 0.91660 0.86755 0.86960 0.89215 0.96582 0.95579 0.92700 0.84543 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.15 0.37 -1.11 16 2 C -0.07 -0.83 6.04 -27.89 -0.17 -1.00 16 3 C -0.12 -1.74 5.10 -104.99 -0.54 -2.28 16 4 C -0.11 -1.65 9.66 -39.54 -0.38 -2.03 16 5 C -0.13 -2.01 10.08 -39.43 -0.40 -2.41 16 6 C 0.08 1.52 7.28 -83.99 -0.61 0.90 16 7 N -0.58 -11.63 5.69 -6.95 -0.04 -11.67 16 8 H 0.42 7.79 8.24 -40.82 -0.34 7.45 16 9 C 0.16 3.40 5.79 -81.77 -0.47 2.93 16 10 C 0.09 2.12 2.66 -92.93 -0.25 1.87 16 11 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.13 -3.05 8.95 37.16 0.33 -2.72 16 13 C -0.52 -13.59 8.28 -34.44 -0.29 -13.87 16 14 H 0.06 1.42 7.01 -52.48 -0.37 1.05 16 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.04 11.32 55.43 0.63 -23.42 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.25 -5.24 10.95 -37.67 -0.41 -5.65 16 22 C -0.09 -1.79 6.37 -105.14 -0.67 -2.46 16 23 C -0.08 -1.28 9.67 -39.65 -0.38 -1.66 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -27.56 300.75 -9.08 -36.65 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.22 Total: 6.33 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.96 Total: -27.83 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.59 Total: -35.08 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.56 -9.08 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.273 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds