Wall clock time and date at job start Mon Mar 30 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47161 * 2 1 4 4 C 1.38831 * 119.73439 * 270.02039 * 3 2 1 5 5 C 1.37747 * 120.67058 * 179.97438 * 4 3 2 6 6 C 1.39131 * 119.77571 * 0.02562 * 5 4 3 7 7 N 1.37685 * 133.50742 * 180.02562 * 6 5 4 8 8 H 0.97003 * 125.06328 * 359.97438 * 7 6 5 9 9 C 1.36831 * 109.87415 * 179.71359 * 7 6 5 10 10 C 1.50701 * 125.03981 * 180.29845 * 9 7 6 11 11 H 1.08993 * 109.47280 * 155.16613 * 10 9 7 12 12 C 1.52996 * 109.47002 * 275.16998 * 10 9 7 13 13 C 1.50697 * 109.46593 * 35.16705 * 10 9 7 14 14 H 1.08006 * 120.00370 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00100 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99426 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00706 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46698 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47362 * 119.99996 * 17 15 13 20 20 H 1.48501 * 109.47357 * 240.00666 * 17 15 13 21 21 C 1.34242 * 109.92845 * 0.44758 * 9 7 6 22 22 C 1.40670 * 119.33090 * 359.97438 * 6 5 4 23 23 C 1.36620 * 119.73823 * 89.99935 * 3 2 1 24 24 H 1.08994 * 109.47247 * 60.00308 * 1 2 3 25 25 H 1.09006 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47362 * 300.00177 * 1 2 3 27 27 H 1.09001 * 109.47099 * 239.99413 * 2 1 3 28 28 H 1.09005 * 109.46845 * 119.99980 * 2 1 3 29 29 H 1.08005 * 119.66477 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.11351 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46749 * 179.97438 * 12 10 9 32 32 H 1.08995 * 109.47123 * 299.99569 * 12 10 9 33 33 H 1.09002 * 109.47226 * 59.99799 * 12 10 9 34 34 H 0.97006 * 119.99649 * 179.97438 * 16 15 13 35 35 H 1.08002 * 126.50514 * 179.83712 * 21 9 7 36 36 H 1.07998 * 120.11857 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2614 2.0701 -1.2055 5 6 2.7200 3.3688 -1.2280 6 6 2.9573 4.0386 -0.0318 7 7 3.4041 5.3047 0.2731 8 1 3.6432 5.9831 -0.3778 9 6 3.4552 5.4655 1.6310 10 6 3.8905 6.7234 2.3375 11 1 3.4415 6.7566 3.3301 12 6 5.4150 6.7342 2.4667 13 6 3.4451 7.9248 1.5443 14 1 2.9008 7.7909 0.6210 15 6 3.7315 9.1951 1.9976 16 7 4.3938 9.3581 3.1221 17 14 3.1801 10.6844 1.0140 18 1 2.4589 10.2340 -0.2036 19 1 2.2750 11.5187 1.8447 20 1 4.3674 11.4842 0.6192 21 6 3.0631 4.3356 2.2406 22 6 2.7235 3.3762 1.1869 23 6 2.2582 2.0597 1.1863 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.0774 1.5520 -2.1351 30 1 2.8948 3.8655 -2.1710 31 1 5.7298 7.6442 2.9774 32 1 5.7371 5.8652 3.0404 33 1 5.8640 6.7010 1.4740 34 1 4.5957 10.2518 3.4408 35 1 3.0041 4.1675 3.3058 36 1 2.0778 1.5483 2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260870833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:51 Heat of formation + Delta-G solvation = 14.885295 kcal Electronic energy + Delta-G solvation = -16693.502272 eV Core-core repulsion = 14141.205268 eV Total energy + Delta-G solvation = -2552.297004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08762 -38.67460 -36.11198 -34.03278 -32.72409 -32.42887 -29.43509 -28.74536 -27.27765 -24.63211 -23.90765 -22.38993 -21.34179 -20.73253 -18.52086 -18.39647 -16.88937 -16.23880 -15.98955 -15.40418 -15.20586 -14.91074 -14.48999 -14.32541 -14.14868 -13.95077 -13.70497 -13.43742 -13.10598 -12.90119 -12.83614 -12.37686 -12.25193 -12.02739 -11.81506 -11.76666 -11.59368 -11.45987 -11.04078 -10.58366 -10.47954 -8.80004 -8.45930 -8.16872 -6.32589 0.34097 0.80313 1.38440 1.41319 1.51020 1.96626 2.38248 2.43635 3.04774 3.12640 3.85665 4.02205 4.14942 4.35860 4.37582 4.58146 4.62803 4.66877 4.74676 4.79685 4.84193 5.05909 5.08238 5.11737 5.13001 5.18089 5.25069 5.31178 5.46323 5.49155 5.60061 5.68274 5.88553 5.91034 6.01994 6.05740 6.28334 6.43797 6.75145 6.83062 7.37008 8.88177 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041092 B = 0.005027 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.241404 B = 5568.420207 C = 5848.031269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.104 4.104 5 C -0.134 4.134 6 C 0.062 3.938 7 N -0.583 5.583 8 H 0.416 0.584 9 C 0.127 3.873 10 C 0.090 3.910 11 H 0.025 0.975 12 C -0.119 4.119 13 C -0.535 4.535 14 H 0.055 0.945 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.278 1.278 21 C -0.260 4.260 22 C -0.121 4.121 23 C -0.089 4.089 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 -14.808 -7.662 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.155 4.155 6 C -0.045 4.045 7 N -0.186 5.186 8 H 0.254 0.746 9 C 0.017 3.983 10 C 0.071 3.929 11 H 0.043 0.957 12 C -0.177 4.177 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.203 1.203 21 C -0.284 4.284 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.111 -14.567 -7.609 16.941 hybrid contribution 0.040 1.698 -0.232 1.714 sum -4.071 -12.869 -7.842 15.610 Atomic orbital electron populations 1.21744 0.94627 1.02201 1.01626 1.20481 0.96181 0.90926 1.03487 1.19632 1.01913 0.97743 0.92226 1.20941 0.99613 0.93214 0.98518 1.20300 1.04783 0.95807 0.94560 1.18717 1.03324 0.86081 0.96346 1.41853 1.57820 1.12141 1.06737 0.74592 1.21004 0.97638 0.96885 0.82748 1.17521 0.93708 0.87383 0.94301 0.95726 1.21590 0.96502 1.00502 0.99107 1.21315 1.36435 0.91216 1.08364 0.92676 1.25678 0.94804 1.01565 0.95900 1.69999 1.40133 1.23100 1.21748 0.85519 0.78063 0.79333 0.78797 1.19343 1.20734 1.20344 1.21543 1.15091 0.93472 0.98316 1.19464 1.05160 0.95489 0.92451 1.20274 0.99700 0.91970 0.98796 0.92830 0.90922 0.93748 0.89699 0.90815 0.83157 0.84802 0.91418 0.95264 0.95430 0.92623 0.84169 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.89 71.98 0.71 -1.70 16 2 C -0.07 -1.33 6.04 29.85 0.18 -1.15 16 3 C -0.11 -2.93 5.10 -20.10 -0.10 -3.03 16 4 C -0.10 -2.61 9.66 22.30 0.22 -2.39 16 5 C -0.13 -3.97 10.08 22.37 0.23 -3.75 16 6 C 0.06 2.32 7.28 39.03 0.28 2.60 16 7 N -0.58 -23.67 5.69 -175.90 -1.00 -24.67 16 8 H 0.42 15.90 8.24 -92.71 -0.76 15.13 16 9 C 0.13 5.74 5.79 40.87 0.24 5.97 16 10 C 0.09 4.53 2.66 -12.29 -0.03 4.50 16 11 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 12 C -0.12 -5.74 8.95 71.98 0.64 -5.10 16 13 C -0.54 -28.45 8.28 25.60 0.21 -28.23 16 14 H 0.06 2.86 7.01 -2.91 -0.02 2.84 16 15 C 0.02 1.09 5.30 84.65 0.45 1.54 16 16 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 17 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 C -0.26 -10.98 10.95 23.51 0.26 -10.73 16 22 C -0.12 -4.61 6.37 -20.20 -0.13 -4.74 16 23 C -0.09 -2.77 9.67 22.23 0.22 -2.56 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 28 H 0.07 1.25 8.08 -2.38 -0.02 1.23 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 35 H 0.14 5.54 8.06 -2.91 -0.02 5.52 16 36 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -59.86 300.75 4.94 -54.92 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.30 Total: 24.80 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.37 Total: -48.76 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -0.76 Total: -75.25 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -59.86 4.94 -54.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.804 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds