Wall clock time and date at job start Mon Mar 30 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.46769 * 2 1 4 4 C 1.38833 * 119.73901 * 270.02366 * 3 2 1 5 5 C 1.37746 * 120.66907 * 180.02562 * 4 3 2 6 6 C 1.39134 * 119.77738 * 359.95717 * 5 4 3 7 7 N 1.37681 * 133.50409 * 180.02562 * 6 5 4 8 8 H 0.96993 * 125.06844 * 359.97132 * 7 6 5 9 9 C 1.36836 * 109.86887 * 179.97438 * 7 6 5 10 10 C 1.50706 * 125.03135 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46953 * 205.02025 * 10 9 7 12 12 C 1.52997 * 109.47238 * 85.02413 * 10 9 7 13 13 C 1.50697 * 109.47178 * 325.01887 * 10 9 7 14 14 H 1.07998 * 120.00039 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99815 * 180.02562 * 13 10 9 16 16 N 1.31508 * 119.99915 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47152 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46821 * 119.99784 * 17 15 13 20 20 H 1.48494 * 109.47204 * 240.00116 * 17 15 13 21 21 C 1.34238 * 109.93230 * 0.25873 * 9 7 6 22 22 C 1.40666 * 119.33307 * 0.02562 * 6 5 4 23 23 C 1.36624 * 119.73479 * 90.00722 * 3 2 1 24 24 H 1.08992 * 109.47719 * 59.99516 * 1 2 3 25 25 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46789 * 299.99617 * 1 2 3 27 27 H 1.09001 * 109.46400 * 240.00341 * 2 1 3 28 28 H 1.09001 * 109.47170 * 120.00365 * 2 1 3 29 29 H 1.08001 * 119.66514 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.10997 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.46832 * 299.99686 * 12 10 9 33 33 H 1.09004 * 109.47261 * 59.99705 * 12 10 9 34 34 H 0.97001 * 119.99839 * 179.97438 * 16 15 13 35 35 H 1.08001 * 126.50110 * 179.71081 * 21 9 7 36 36 H 1.08004 * 120.11996 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2613 2.0703 -1.2055 5 6 2.7208 3.3687 -1.2278 6 6 2.9577 4.0385 -0.0316 7 7 3.4052 5.3043 0.2734 8 1 3.6452 5.9824 -0.3773 9 6 3.4610 5.4633 1.6313 10 6 3.9040 6.7186 2.3379 11 1 4.2751 6.4649 3.3309 12 6 2.7184 7.6772 2.4661 13 6 5.0017 7.3804 1.5454 14 1 5.3440 6.9366 0.6222 15 6 5.5690 8.5523 1.9990 16 7 5.1525 9.0923 3.1234 17 14 6.9292 9.3730 1.0162 18 1 7.2126 8.5718 -0.2016 19 1 6.4995 10.7384 0.6208 20 1 8.1564 9.4616 1.8477 21 6 3.0675 4.3339 2.2408 22 6 2.7238 3.3761 1.1871 23 6 2.2583 2.0597 1.1863 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.0774 1.5523 -2.1351 30 1 2.8963 3.8651 -2.1707 31 1 3.0388 8.5849 2.9776 32 1 2.3474 7.9309 1.4731 33 1 1.9245 7.1984 3.0394 34 1 5.5518 9.9167 3.4427 35 1 3.0132 4.1641 3.3060 36 1 2.0772 1.5484 2.1203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260870837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:54 Heat of formation + Delta-G solvation = 27.627863 kcal Electronic energy + Delta-G solvation = -16690.981752 eV Core-core repulsion = 14139.237307 eV Total energy + Delta-G solvation = -2551.744445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65944 -37.39091 -34.33573 -32.80012 -31.29742 -30.70237 -28.14386 -27.34353 -25.28758 -23.44011 -22.49451 -20.94580 -20.03450 -19.14623 -17.09962 -16.48164 -15.18292 -15.04505 -14.59881 -14.01147 -13.79533 -13.42592 -13.25926 -12.97903 -12.68904 -12.55932 -12.25738 -12.08044 -11.59890 -11.12472 -11.06013 -11.01563 -10.85960 -10.63352 -10.38661 -10.31432 -10.28722 -9.75194 -9.17578 -9.04764 -8.54112 -7.43861 -6.99775 -6.16584 -4.25764 1.65356 2.07699 3.19597 3.28453 3.30715 3.54255 3.90045 4.29731 4.33756 5.00122 5.04131 5.15682 5.30505 5.43616 5.48814 5.62473 5.77193 5.83469 5.93026 5.96348 6.04973 6.24974 6.34053 6.40054 6.53667 6.62103 6.70336 6.85783 6.98340 7.03885 7.09913 7.29440 7.37908 7.56798 7.68624 7.87856 7.95408 8.21302 8.33524 8.75293 9.40859 10.89001 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.045382 B = 0.004991 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.837104 B = 5608.253439 C = 5958.667927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.126 4.126 6 C 0.080 3.920 7 N -0.581 5.581 8 H 0.415 0.585 9 C 0.156 3.844 10 C 0.087 3.913 11 H 0.054 0.946 12 C -0.131 4.131 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.255 4.255 22 C -0.093 4.093 23 C -0.078 4.078 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.137 0.863 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -11.824 -5.633 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.028 4.028 7 N -0.183 5.183 8 H 0.253 0.747 9 C 0.046 3.954 10 C 0.068 3.932 11 H 0.072 0.928 12 C -0.189 4.189 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.278 4.278 22 C -0.098 4.098 23 C -0.096 4.096 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.271 -11.553 -5.572 14.277 hybrid contribution 0.930 0.886 -0.830 1.529 sum -5.341 -10.667 -6.401 13.538 Atomic orbital electron populations 1.21759 0.95442 1.00932 1.02176 1.20400 0.95625 0.93215 1.02009 1.19165 1.03913 0.96163 0.92968 1.20440 1.02002 0.93942 0.96997 1.19931 1.04881 0.95107 0.94711 1.18319 1.02717 0.86546 0.95179 1.41960 1.57204 1.11544 1.07556 0.74715 1.21408 0.94565 0.97841 0.81620 1.17745 0.93948 0.85892 0.95577 0.92791 1.21758 0.95758 1.02131 0.99219 1.21048 1.18881 1.08022 1.08302 0.92613 1.24928 0.96767 0.96873 0.94982 1.69874 1.41798 1.19985 1.20471 0.86498 0.81882 0.79295 0.80129 1.19838 1.20876 1.20780 1.21335 1.15680 0.93205 0.97607 1.19258 1.03464 0.94250 0.92870 1.20011 0.99683 0.92850 0.97097 0.92758 0.93048 0.92628 0.91741 0.91647 0.86755 0.86961 0.89224 0.95578 0.96592 0.92696 0.84541 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.08 -0.83 6.04 -27.88 -0.17 -1.00 16 3 C -0.12 -1.74 5.10 -104.99 -0.54 -2.28 16 4 C -0.11 -1.65 9.66 -39.54 -0.38 -2.03 16 5 C -0.13 -2.01 10.08 -39.43 -0.40 -2.41 16 6 C 0.08 1.52 7.28 -83.99 -0.61 0.90 16 7 N -0.58 -11.63 5.69 -6.95 -0.04 -11.67 16 8 H 0.42 7.79 8.22 -40.82 -0.34 7.46 16 9 C 0.16 3.40 5.79 -81.77 -0.47 2.93 16 10 C 0.09 2.12 2.66 -92.92 -0.25 1.87 16 11 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.13 -3.05 8.95 37.16 0.33 -2.72 16 13 C -0.52 -13.60 8.28 -34.44 -0.29 -13.88 16 14 H 0.06 1.42 6.99 -52.49 -0.37 1.05 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.04 11.32 55.43 0.63 -23.42 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 C -0.25 -5.24 10.95 -37.67 -0.41 -5.65 16 22 C -0.09 -1.79 6.37 -105.14 -0.67 -2.46 16 23 C -0.08 -1.27 9.67 -39.64 -0.38 -1.66 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 35 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -27.57 300.73 -9.08 -36.65 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.22 Total: 6.32 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.96 Total: -27.81 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.59 Total: -35.08 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.57 -9.08 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.274 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds