Wall clock time and date at job start Mon Mar 30 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 125.02949 * 2 1 4 4 C 1.46494 * 106.99608 * 179.97438 * 3 2 1 5 5 C 1.40698 * 106.03453 * 359.97438 * 4 3 2 6 6 C 1.39091 * 119.33334 * 179.97438 * 5 4 3 7 7 C 1.37793 * 119.77218 * 0.02562 * 6 5 4 8 8 C 1.38776 * 120.66835 * 359.97438 * 7 6 5 9 9 C 1.36663 * 120.53507 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.12453 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47236 * 265.02359 * 10 9 8 12 12 C 1.50697 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99891 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00078 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00105 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00098 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46819 * 90.00248 * 16 14 12 18 18 H 1.48504 * 109.47571 * 210.00072 * 16 14 12 19 19 H 1.48495 * 109.47244 * 330.00467 * 16 14 12 20 20 N 1.36828 * 125.03293 * 179.69171 * 2 1 3 21 21 C 1.46506 * 125.06239 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47152 * 90.02674 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02774 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02755 * 1 2 3 25 25 H 1.07993 * 126.50014 * 359.97438 * 3 2 1 26 26 H 1.07995 * 120.11051 * 179.97438 * 6 5 4 27 27 H 1.07998 * 119.66093 * 180.02562 * 7 6 5 28 28 H 1.08009 * 119.73600 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.46699 * 25.01863 * 10 9 8 30 30 H 1.08992 * 109.47336 * 145.01903 * 10 9 8 31 31 H 1.08997 * 109.46650 * 299.99891 * 11 10 9 32 32 H 1.08998 * 109.46960 * 59.99319 * 11 10 9 33 33 H 0.97007 * 120.00157 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47055 * 90.01856 * 21 20 2 35 35 H 1.08994 * 109.47173 * 210.02224 * 21 20 2 36 36 H 1.09007 * 109.46697 * 330.02271 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0993 0.0000 4 6 3.6706 0.6458 0.0006 5 6 3.6215 -0.7604 0.0016 6 6 4.8096 -1.4837 0.0018 7 6 6.0159 -0.8178 0.0016 8 6 6.0589 0.5693 0.0007 9 6 4.9038 1.2997 -0.0006 10 6 4.9612 2.8056 -0.0022 11 6 4.8550 3.3216 1.4344 12 6 4.9118 4.8275 1.4327 13 1 5.0139 5.3630 0.5004 14 6 4.8344 5.5215 2.6214 15 7 4.8845 6.8357 2.6201 16 14 4.6585 4.5953 4.2341 17 1 6.0058 4.2970 4.7830 18 1 3.9024 5.4282 5.2035 19 1 3.9278 3.3244 3.9978 20 7 2.2925 -1.1204 0.0060 21 6 1.7937 -2.4979 0.0129 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9354 2.1236 -0.0004 26 1 4.7865 -2.5634 0.0029 27 1 6.9373 -1.3812 0.0014 28 1 7.0129 1.0757 0.0002 29 1 5.9058 3.1326 -0.4367 30 1 4.1340 3.2001 -0.5921 31 1 3.9104 2.9944 1.8689 32 1 5.6823 2.9269 2.0242 33 1 4.8297 7.3241 3.4564 34 1 1.6707 -2.8449 -1.0131 35 1 2.5064 -3.1398 0.5306 36 1 0.8327 -2.5337 0.5263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:51 Heat of formation + Delta-G solvation = 43.304644 kcal Electronic energy + Delta-G solvation = -16878.496067 eV Core-core repulsion = 14327.431419 eV Total energy + Delta-G solvation = -2551.064649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12155 -37.29009 -34.07970 -32.69615 -31.64765 -31.03932 -29.01932 -26.86894 -25.85914 -24.78424 -21.48229 -21.24281 -20.14676 -18.96081 -16.83590 -16.29146 -16.02386 -15.42852 -14.86284 -14.18464 -14.09023 -13.54987 -13.22821 -12.82653 -12.81061 -12.67863 -12.57320 -12.40117 -12.24090 -11.94600 -11.46792 -11.20109 -10.97715 -10.82992 -10.55839 -10.06010 -9.71505 -9.60392 -9.09103 -8.94688 -8.46141 -7.78302 -7.17286 -5.97582 -3.94706 1.47153 2.00541 2.93384 2.95551 3.37105 3.43854 3.51434 4.29191 4.52844 4.69513 4.77999 4.95540 5.04478 5.20573 5.25873 5.34967 5.37384 5.48722 5.50922 5.70660 5.78197 5.83881 5.97228 6.15894 6.25995 6.39147 6.50833 6.62329 6.83560 6.92523 7.05740 7.16106 7.22174 7.42428 7.52743 7.58864 7.60252 7.87549 8.61310 9.07802 9.65843 11.15884 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.006585 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.997673 B = 4250.887069 C = 4818.559406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.057 3.943 3 C -0.182 4.182 4 C -0.104 4.104 5 C 0.097 3.903 6 C -0.152 4.152 7 C -0.093 4.093 8 C -0.159 4.159 9 C -0.010 4.010 10 C -0.069 4.069 11 C -0.004 4.004 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.906 5.906 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 N -0.491 5.491 21 C 0.082 3.918 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.149 0.851 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 -19.373 -5.638 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.108 4.108 5 C -0.008 4.008 6 C -0.173 4.173 7 C -0.112 4.112 8 C -0.178 4.178 9 C -0.010 4.010 10 C -0.107 4.107 11 C -0.041 4.041 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.545 5.545 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 N -0.176 5.176 21 C -0.060 4.060 22 H 0.091 0.909 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.166 0.834 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.463 -19.532 -5.515 21.300 hybrid contribution -0.036 -0.503 0.998 1.118 sum -6.499 -20.035 -4.516 21.541 Atomic orbital electron populations 1.20414 0.88174 1.03301 1.02631 1.20223 0.93226 0.85468 1.05902 1.21587 0.90607 0.97786 1.10698 1.19046 0.93480 0.91444 1.06861 1.18204 0.84019 0.94113 1.04425 1.19795 0.89838 0.98146 1.09553 1.20717 0.96253 0.94418 0.99825 1.20559 0.97972 0.93462 1.05818 1.19585 0.90645 0.97109 0.93708 1.20596 1.01854 0.87850 1.00370 1.19516 0.96574 0.96627 0.91388 1.21169 1.49909 0.89539 0.94882 0.90952 1.24988 0.94679 0.94669 0.99015 1.69920 1.51422 1.06182 1.26979 0.86825 0.78619 0.80423 0.83794 1.20330 1.21463 1.18867 1.43612 1.03877 1.05345 1.64789 1.21806 1.00677 0.81151 1.02368 0.90905 0.89763 0.91899 0.83380 0.87225 0.86326 0.86104 0.91783 0.91631 0.96339 0.97069 0.92839 0.91838 0.90517 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.03 36.01 0.36 -0.51 16 2 C 0.06 0.82 6.83 -81.77 -0.56 0.26 16 3 C -0.18 -3.17 10.74 -37.67 -0.40 -3.57 16 4 C -0.10 -1.96 6.15 -105.14 -0.65 -2.61 16 5 C 0.10 1.62 6.81 -83.99 -0.57 1.05 16 6 C -0.15 -2.25 9.97 -39.43 -0.39 -2.65 16 7 C -0.09 -1.38 10.01 -39.55 -0.40 -1.78 16 8 C -0.16 -2.74 9.60 -39.95 -0.38 -3.13 16 9 C -0.01 -0.19 5.13 -104.69 -0.54 -0.73 16 10 C -0.07 -1.49 5.20 -27.88 -0.15 -1.63 16 11 C 0.00 -0.09 4.02 -27.88 -0.11 -0.21 16 12 C -0.52 -15.15 9.66 -34.45 -0.33 -15.48 16 13 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 16 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 20 N -0.49 -6.90 3.18 -117.19 -0.37 -7.28 16 21 C 0.08 0.75 10.80 59.85 0.65 1.40 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.51 6.91 -51.93 -0.36 0.15 16 25 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.12 1.93 8.05 -52.48 -0.42 1.50 16 29 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 31 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 32 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.63 8.11 -51.93 -0.42 0.20 16 36 H 0.08 0.56 6.88 -51.93 -0.36 0.21 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -33.71 301.49 -8.58 -42.29 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.28 Total: -2.07 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.57 Total: -27.68 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.40 Total: -35.00 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.71 -8.58 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.599 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds