Wall clock time and date at job start Mon Mar 30 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 125.02949 * 2 1 4 4 C 1.46494 * 106.99608 * 179.97438 * 3 2 1 5 5 C 1.40698 * 106.03453 * 359.97438 * 4 3 2 6 6 C 1.39091 * 119.33334 * 179.97438 * 5 4 3 7 7 C 1.37793 * 119.77218 * 0.02562 * 6 5 4 8 8 C 1.38776 * 120.66835 * 359.97438 * 7 6 5 9 9 C 1.36663 * 120.53507 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.12453 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47236 * 265.02359 * 10 9 8 12 12 C 1.50697 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99891 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00078 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00105 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00098 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46819 * 90.00248 * 16 14 12 18 18 H 1.48504 * 109.47571 * 210.00072 * 16 14 12 19 19 H 1.48495 * 109.47244 * 330.00467 * 16 14 12 20 20 N 1.36828 * 125.03293 * 179.69171 * 2 1 3 21 21 C 1.46506 * 125.06239 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47152 * 90.02674 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02774 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02755 * 1 2 3 25 25 H 1.07993 * 126.50014 * 359.97438 * 3 2 1 26 26 H 1.07995 * 120.11051 * 179.97438 * 6 5 4 27 27 H 1.07998 * 119.66093 * 180.02562 * 7 6 5 28 28 H 1.08009 * 119.73600 * 180.02562 * 8 7 6 29 29 H 1.08999 * 109.46699 * 25.01863 * 10 9 8 30 30 H 1.08992 * 109.47336 * 145.01903 * 10 9 8 31 31 H 1.08997 * 109.46650 * 299.99891 * 11 10 9 32 32 H 1.08998 * 109.46960 * 59.99319 * 11 10 9 33 33 H 0.97007 * 120.00157 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47055 * 90.01856 * 21 20 2 35 35 H 1.08994 * 109.47173 * 210.02224 * 21 20 2 36 36 H 1.09007 * 109.46697 * 330.02271 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0993 0.0000 4 6 3.6706 0.6458 0.0006 5 6 3.6215 -0.7604 0.0016 6 6 4.8096 -1.4837 0.0018 7 6 6.0159 -0.8178 0.0016 8 6 6.0589 0.5693 0.0007 9 6 4.9038 1.2997 -0.0006 10 6 4.9612 2.8056 -0.0022 11 6 4.8550 3.3216 1.4344 12 6 4.9118 4.8275 1.4327 13 1 5.0139 5.3630 0.5004 14 6 4.8344 5.5215 2.6214 15 7 4.8845 6.8357 2.6201 16 14 4.6585 4.5953 4.2341 17 1 6.0058 4.2970 4.7830 18 1 3.9024 5.4282 5.2035 19 1 3.9278 3.3244 3.9978 20 7 2.2925 -1.1204 0.0060 21 6 1.7937 -2.4979 0.0129 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9354 2.1236 -0.0004 26 1 4.7865 -2.5634 0.0029 27 1 6.9373 -1.3812 0.0014 28 1 7.0129 1.0757 0.0002 29 1 5.9058 3.1326 -0.4367 30 1 4.1340 3.2001 -0.5921 31 1 3.9104 2.9944 1.8689 32 1 5.6823 2.9269 2.0242 33 1 4.8297 7.3241 3.4564 34 1 1.6707 -2.8449 -1.0131 35 1 2.5064 -3.1398 0.5306 36 1 0.8327 -2.5337 0.5263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:51 Heat of formation + Delta-G solvation = 24.313628 kcal Electronic energy + Delta-G solvation = -16879.319580 eV Core-core repulsion = 14327.431419 eV Total energy + Delta-G solvation = -2551.888161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.26999 -38.54432 -35.87180 -34.30908 -33.18633 -32.04985 -30.65342 -28.00670 -26.91942 -26.47783 -23.09611 -22.60677 -21.57363 -20.19635 -18.95009 -17.56844 -17.16053 -16.45767 -16.29735 -16.07449 -15.38663 -14.93053 -14.63105 -14.30968 -14.04803 -13.95347 -13.83983 -13.56355 -13.32643 -13.12487 -12.96257 -12.79646 -12.48093 -12.32149 -11.97208 -11.75304 -11.65103 -11.51094 -11.19614 -10.78244 -10.27931 -8.96865 -8.38914 -8.31115 -6.34657 0.24750 0.75232 1.31673 1.33304 1.47245 1.77183 1.94374 2.34163 3.00789 3.03616 3.78823 3.82453 3.98220 4.14390 4.28047 4.38820 4.43437 4.46984 4.56263 4.66822 4.70773 4.73550 4.77444 4.79357 4.96572 5.05406 5.09120 5.14956 5.27810 5.40231 5.46941 5.60201 5.64282 5.83100 5.95176 6.00940 6.26992 6.35447 6.51895 6.71712 7.29765 8.85551 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.006585 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.997673 B = 4250.887069 C = 4818.559406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.081 3.919 3 C -0.241 4.241 4 C -0.134 4.134 5 C 0.080 3.920 6 C -0.138 4.138 7 C -0.097 4.097 8 C -0.163 4.163 9 C -0.048 4.048 10 C -0.057 4.057 11 C 0.008 3.992 12 C -0.530 4.530 13 H 0.035 0.965 14 C 0.010 3.990 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.258 1.258 20 N -0.487 5.487 21 C 0.072 3.928 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.125 0.875 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.012 0.988 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -23.490 -4.803 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.265 4.265 4 C -0.138 4.138 5 C -0.026 4.026 6 C -0.158 4.158 7 C -0.116 4.116 8 C -0.183 4.183 9 C -0.049 4.049 10 C -0.095 4.095 11 C -0.029 4.029 12 C -0.568 4.568 13 H 0.053 0.947 14 C -0.187 4.187 15 N -0.589 5.589 16 Si 0.770 3.230 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.182 1.182 20 N -0.172 5.172 21 C -0.068 4.068 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.148 0.852 26 H 0.166 0.834 27 H 0.173 0.827 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.282 -23.679 -4.694 25.214 hybrid contribution 0.161 0.742 0.633 0.989 sum -7.121 -22.937 -4.061 24.358 Atomic orbital electron populations 1.20574 0.84818 1.04717 1.04253 1.20785 0.95094 0.84803 1.01966 1.21624 0.91222 0.98333 1.15367 1.19353 0.93635 0.93323 1.07537 1.18484 0.85829 0.93295 1.04968 1.20257 0.88860 0.99975 1.06741 1.21083 0.98046 0.93351 0.99120 1.20775 0.97321 0.94988 1.05176 1.19414 0.92293 0.95379 0.97801 1.20319 1.01025 0.90419 0.97689 1.19342 0.95859 0.93773 0.93969 1.21463 1.49842 0.91797 0.93735 0.94653 1.25909 0.94160 0.95543 1.03085 1.70056 1.52521 1.07954 1.28372 0.85716 0.79321 0.79158 0.78843 1.18900 1.20258 1.18218 1.43964 1.02950 1.07119 1.63144 1.22216 1.02095 0.78346 1.04178 0.89022 0.89721 0.89090 0.85194 0.83420 0.82684 0.85665 0.92082 0.93053 0.97180 0.96942 0.92369 0.90027 0.89111 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 10.03 71.24 0.71 -0.76 16 2 C 0.08 2.21 6.83 40.87 0.28 2.49 16 3 C -0.24 -8.69 10.74 23.51 0.25 -8.44 16 4 C -0.13 -5.15 6.15 -20.20 -0.12 -5.27 16 5 C 0.08 2.51 6.81 39.03 0.27 2.78 16 6 C -0.14 -3.60 9.97 22.37 0.22 -3.38 16 7 C -0.10 -2.62 10.01 22.29 0.22 -2.40 16 8 C -0.16 -5.57 9.60 22.03 0.21 -5.36 16 9 C -0.05 -1.94 5.13 -19.91 -0.10 -2.04 16 10 C -0.06 -2.61 5.20 29.85 0.16 -2.45 16 11 C 0.01 0.42 4.02 29.85 0.12 0.54 16 12 C -0.53 -32.66 9.66 25.60 0.25 -32.41 16 13 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 14 C 0.01 0.61 5.47 84.65 0.46 1.08 16 15 N -0.95 -61.48 13.96 21.44 0.30 -61.19 16 16 Si 0.95 47.19 27.47 68.60 1.88 49.07 16 17 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 20 N -0.49 -12.33 3.18 -524.66 -1.67 -14.00 16 21 C 0.07 0.97 10.80 127.77 1.38 2.35 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.06 6.91 -2.38 -0.02 1.05 16 25 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 26 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.13 3.98 8.05 -2.91 -0.02 3.96 16 29 H 0.06 2.72 8.05 -2.39 -0.02 2.70 16 30 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 31 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 32 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 33 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.01 8.11 -2.39 -0.02 0.99 16 36 H 0.10 0.92 6.88 -2.38 -0.02 0.91 16 Total: -1.00 -76.65 301.49 5.82 -70.83 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.99 Total: 8.57 kcal Atomic # 6 Polarization: -57.59 SS G_CDS: 4.31 Total: -53.28 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.37 Total: -75.18 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.07 kcal Total: -76.65 5.82 -70.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.143 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds