Wall clock time and date at job start Mon Mar 30 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34238 * 125.03231 * 2 1 4 4 C 1.46490 * 106.99797 * 180.02562 * 3 2 1 5 5 C 1.39629 * 134.03733 * 180.02562 * 4 3 2 6 6 C 1.36624 * 119.76542 * 179.97438 * 5 4 3 7 7 C 1.38824 * 120.53068 * 0.02562 * 6 5 4 8 8 C 1.37754 * 120.66538 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.10970 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46946 * 92.77020 * 9 8 7 11 11 C 1.50700 * 109.46976 * 184.14623 * 10 9 8 12 12 H 1.08004 * 120.00271 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00495 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00530 * 180.02562 * 13 11 10 15 15 Si 1.86810 * 119.99496 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.46854 * 90.00248 * 15 13 11 17 17 H 1.48498 * 109.47022 * 210.00160 * 15 13 11 18 18 H 1.48493 * 109.46988 * 330.00224 * 15 13 11 19 19 C 1.39126 * 119.77912 * 359.94834 * 8 7 6 20 20 N 1.36824 * 125.03768 * 179.69521 * 2 1 3 21 21 C 1.46504 * 125.05974 * 0.02562 * 20 2 1 22 22 H 1.08999 * 109.47178 * 90.02627 * 1 2 3 23 23 H 1.09004 * 109.47537 * 330.02428 * 1 2 3 24 24 H 1.09001 * 109.47241 * 210.02382 * 1 2 3 25 25 H 1.07998 * 126.50657 * 359.97307 * 3 2 1 26 26 H 1.07999 * 120.11217 * 359.95567 * 5 4 3 27 27 H 1.08004 * 119.73250 * 179.97438 * 6 5 4 28 28 H 1.08001 * 119.66781 * 179.97438 * 7 6 5 29 29 H 1.08995 * 109.47184 * 212.77013 * 9 8 7 30 30 H 1.09004 * 109.46831 * 332.77288 * 9 8 7 31 31 H 1.08999 * 109.47846 * 304.14850 * 10 9 8 32 32 H 1.08999 * 109.47304 * 64.15247 * 10 9 8 33 33 H 0.97000 * 119.99911 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47119 * 95.87192 * 21 20 2 35 35 H 1.08997 * 109.47265 * 215.87111 * 21 20 2 36 36 H 1.08999 * 109.47524 * 335.87091 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2775 1.0992 0.0000 4 6 3.6705 0.6457 -0.0006 5 6 4.9041 1.2996 -0.0005 6 6 6.0589 0.5695 -0.0007 7 6 6.0159 -0.8181 -0.0016 8 6 4.8098 -1.4836 -0.0029 9 6 4.7777 -2.9903 -0.0044 10 6 4.6965 -3.5002 1.4358 11 6 4.7670 -5.0055 1.4405 12 1 4.8608 -5.5447 0.5093 13 6 4.7117 -5.6947 2.6334 14 7 4.7738 -7.0083 2.6375 15 14 4.5502 -4.7621 4.2440 16 1 3.1126 -4.5803 4.5685 17 1 5.2093 -5.5316 5.3297 18 1 5.2003 -3.4334 4.1140 19 6 3.6214 -0.7602 -0.0021 20 7 2.2925 -1.1203 0.0060 21 6 1.7937 -2.4978 0.0128 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3634 0.8902 0.5135 24 1 -0.3634 -0.8898 0.5142 25 1 1.9355 2.1236 -0.0004 26 1 4.9453 2.3789 -0.0005 27 1 7.0128 1.0759 -0.0010 28 1 6.9373 -1.3815 -0.0022 29 1 3.9063 -3.3346 -0.5614 30 1 5.6838 -3.3725 -0.4746 31 1 5.5286 -3.0957 2.0120 32 1 3.7554 -3.1792 1.8824 33 1 4.7345 -7.4930 3.4768 34 1 1.7693 -2.8804 -1.0076 35 1 2.4528 -3.1199 0.6183 36 1 0.7881 -2.5181 0.4326 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260878661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:53 Heat of formation + Delta-G solvation = 27.397641 kcal Electronic energy + Delta-G solvation = -17198.767743 eV Core-core repulsion = 14647.013315 eV Total energy + Delta-G solvation = -2551.754428 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.33397 -38.35961 -36.31539 -34.49678 -32.71483 -32.04043 -30.84088 -28.11753 -27.08193 -26.20337 -23.19630 -22.65732 -21.44061 -20.36258 -19.00373 -17.63635 -16.99220 -16.57385 -16.25095 -16.11474 -15.56080 -14.94541 -14.69706 -14.41567 -14.00712 -13.89953 -13.77392 -13.52407 -13.38235 -13.21176 -13.03817 -12.66929 -12.45107 -12.26995 -11.98209 -11.81396 -11.67323 -11.58530 -11.21226 -10.81763 -10.27502 -8.96166 -8.37997 -8.34074 -6.38113 0.25909 0.77097 1.27724 1.31415 1.43380 1.79680 1.97335 2.29809 3.00466 3.02477 3.79587 3.81256 3.97336 4.04858 4.16703 4.34843 4.42185 4.48218 4.58084 4.65512 4.66702 4.69827 4.77150 4.79686 4.91035 5.06199 5.09305 5.15442 5.26215 5.36614 5.38507 5.58110 5.72257 5.79282 5.92530 6.04950 6.22926 6.39339 6.48324 6.68805 7.26772 8.81918 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.007515 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.151739 B = 3725.101282 C = 4354.971516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.072 3.928 3 C -0.225 4.225 4 C -0.127 4.127 5 C -0.091 4.091 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.097 4.097 9 C -0.062 4.062 10 C 0.007 3.993 11 C -0.528 4.528 12 H 0.039 0.961 13 C 0.015 3.985 14 N -0.944 5.944 15 Si 0.939 3.061 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.258 1.258 19 C 0.069 3.931 20 N -0.486 5.486 21 C 0.058 3.942 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.168 0.832 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 17.952 -4.996 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.250 4.250 4 C -0.132 4.132 5 C -0.109 4.109 6 C -0.161 4.161 7 C -0.142 4.142 8 C -0.099 4.099 9 C -0.099 4.099 10 C -0.030 4.030 11 C -0.566 4.566 12 H 0.057 0.943 13 C -0.183 4.183 14 N -0.585 5.585 15 Si 0.763 3.237 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.183 1.183 19 C -0.037 4.037 20 N -0.169 5.169 21 C -0.083 4.083 22 H 0.109 0.891 23 H 0.121 0.879 24 H 0.091 0.909 25 H 0.186 0.814 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.175 17.460 -4.883 19.498 hybrid contribution 0.256 -0.622 0.714 0.980 sum -6.919 16.838 -4.169 18.675 Atomic orbital electron populations 1.20594 0.85063 1.04710 1.04199 1.21050 0.95300 0.84877 1.02327 1.21687 0.89466 0.98667 1.15164 1.19636 0.95267 0.91633 1.06649 1.20506 0.89962 1.00429 1.00020 1.20878 0.99179 0.93052 1.03024 1.20960 0.96198 0.95335 1.01706 1.19268 0.91298 0.95299 1.04076 1.20458 1.01739 0.89950 0.97795 1.19429 0.95730 0.94010 0.93861 1.21400 1.50092 0.91543 0.93591 0.94307 1.25838 0.94221 0.95451 1.02768 1.70037 1.52239 1.08043 1.28163 0.85823 0.79272 0.79396 0.79217 1.19012 1.20448 1.18265 1.18362 0.84734 0.94506 1.06051 1.43974 1.03707 1.06704 1.62499 1.22357 1.02093 0.80177 1.03639 0.89128 0.87928 0.90883 0.81412 0.83697 0.83475 0.85470 0.92086 0.92070 0.97070 0.97157 0.92354 0.90707 0.90554 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.02 71.23 0.71 -0.74 16 2 C 0.07 1.89 6.83 40.87 0.28 2.17 16 3 C -0.23 -6.07 10.95 23.51 0.26 -5.81 16 4 C -0.13 -4.12 6.37 -20.20 -0.13 -4.25 16 5 C -0.09 -2.56 10.05 22.23 0.22 -2.34 16 6 C -0.14 -4.05 9.97 22.03 0.22 -3.83 16 7 C -0.12 -4.18 9.66 22.30 0.22 -3.96 16 8 C -0.10 -3.73 5.15 -19.76 -0.10 -3.83 16 9 C -0.06 -2.62 4.58 29.85 0.14 -2.49 16 10 C 0.01 0.34 3.49 29.85 0.10 0.44 16 11 C -0.53 -30.61 9.66 25.60 0.25 -30.36 16 12 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 13 C 0.01 0.87 5.47 84.66 0.46 1.34 16 14 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 15 Si 0.94 45.30 27.47 68.60 1.88 47.18 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 19 C 0.07 2.54 6.74 39.03 0.26 2.80 16 20 N -0.49 -15.72 3.18 -524.69 -1.67 -17.39 16 21 C 0.06 1.75 9.39 127.77 1.20 2.95 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.14 6.83 -2.39 -0.02 1.12 16 25 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.06 2.51 5.81 -2.39 -0.01 2.50 16 30 H 0.06 2.59 8.07 -2.38 -0.02 2.57 16 31 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 32 H 0.01 0.50 6.02 -2.39 -0.01 0.49 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 35 H 0.08 2.82 4.24 -2.39 -0.01 2.81 16 36 H 0.11 2.47 6.70 -2.39 -0.02 2.45 16 Total: -1.00 -69.98 291.43 5.62 -64.36 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.01 Total: 12.42 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 4.09 Total: -47.91 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.37 Total: -76.05 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -69.98 5.62 -64.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.758 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds