Wall clock time and date at job start Mon Mar 30 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46843 * 299.99697 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99300 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99956 * 185.10105 * 7 2 1 9 9 C 1.50700 * 119.99830 * 5.10668 * 7 2 1 10 10 H 1.08998 * 109.22750 * 25.40738 * 9 7 2 11 11 C 1.52771 * 109.25690 * 265.94381 * 9 7 2 12 12 C 1.53326 * 108.35874 * 188.88626 * 11 9 7 13 13 C 1.52722 * 108.43275 * 69.85451 * 12 11 9 14 14 C 1.50718 * 110.57767 * 308.70782 * 13 12 11 15 15 N 1.32702 * 117.56854 * 197.70821 * 14 13 12 16 16 C 1.31514 * 122.40057 * 180.39854 * 15 14 13 17 17 C 1.50701 * 119.68967 * 179.97438 * 16 15 14 18 18 C 1.53005 * 117.49344 * 163.62269 * 17 16 15 19 19 C 1.53005 * 117.49807 * 95.00180 * 17 16 15 20 20 C 1.38241 * 120.61208 * 359.93366 * 16 15 14 21 21 C 1.38408 * 118.84254 * 359.90517 * 20 16 15 22 22 C 1.37607 * 122.33782 * 17.88457 * 14 13 12 23 23 H 0.97000 * 119.99879 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.68524 * 308.60469 * 11 9 7 25 25 H 1.08996 * 109.68908 * 69.13150 * 11 9 7 26 26 H 1.08992 * 109.64159 * 189.54045 * 12 11 9 27 27 H 1.09000 * 109.64432 * 309.96494 * 12 11 9 28 28 H 1.09003 * 109.25690 * 68.99655 * 13 12 11 29 29 H 1.09006 * 109.25648 * 188.46209 * 13 12 11 30 30 H 1.08997 * 115.55303 * 309.32503 * 17 16 15 31 31 H 1.08993 * 117.50130 * 359.97438 * 18 17 16 32 32 H 1.09005 * 117.49728 * 145.02177 * 18 17 16 33 33 H 1.08997 * 117.49901 * 214.97824 * 19 17 16 34 34 H 1.08997 * 117.50080 * 359.97365 * 19 17 16 35 35 H 1.08001 * 120.57743 * 180.17318 * 20 16 15 36 36 H 1.07992 * 120.56711 * 180.11901 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0837 9 6 1.2555 -2.4966 -0.1151 10 1 0.3076 -2.3216 -0.6240 11 6 0.9823 -3.0466 1.2838 12 6 0.4238 -4.4676 1.1435 13 6 1.5451 -5.3808 0.6523 14 6 2.2062 -4.7974 -0.5701 15 7 2.9369 -5.6119 -1.3208 16 6 3.5615 -5.2021 -2.4032 17 6 4.3757 -6.1799 -3.2106 18 6 4.7592 -5.7732 -4.6349 19 6 3.6946 -6.8482 -4.4067 20 6 3.4773 -3.8828 -2.8076 21 6 2.7224 -3.0005 -2.0544 22 6 2.0761 -3.4717 -0.9154 23 1 -0.4850 0.8401 -0.0004 24 1 1.9096 -3.0713 1.8561 25 1 0.2544 -2.4138 1.7915 26 1 0.0640 -4.8170 2.1111 27 1 -0.3960 -4.4698 0.4251 28 1 2.2873 -5.4956 1.4422 29 1 1.1303 -6.3578 0.4042 30 1 5.0948 -6.7726 -2.6452 31 1 4.4223 -4.7986 -4.9879 32 1 5.7310 -6.0982 -5.0067 33 1 3.9659 -7.8803 -4.6284 34 1 2.6575 -6.5808 -4.6093 35 1 3.9882 -3.5474 -3.6981 36 1 2.6360 -1.9642 -2.3458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260891003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:30 Heat of formation + Delta-G solvation = 35.213835 kcal Electronic energy + Delta-G solvation = -17178.920686 eV Core-core repulsion = 14627.505193 eV Total energy + Delta-G solvation = -2551.415493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03775 -37.38221 -35.29244 -33.31344 -31.79409 -29.52281 -28.90542 -25.09568 -24.01982 -22.98162 -22.00784 -21.05508 -20.59960 -18.57057 -16.56462 -16.28630 -15.77623 -14.88721 -14.64280 -14.45023 -13.70126 -13.51089 -12.79415 -12.68577 -12.62327 -12.05240 -11.88423 -11.59448 -11.38703 -11.26405 -11.00847 -10.85083 -10.45656 -10.37803 -10.25661 -10.14079 -9.80470 -9.53823 -9.23087 -8.78476 -8.63050 -8.40140 -7.72876 -6.12566 -4.16407 1.84438 2.08446 3.22991 3.32172 3.36301 3.85521 4.33388 4.42165 4.59208 4.96486 5.08470 5.17378 5.22298 5.40224 5.58749 5.62428 5.76174 5.79402 5.85206 5.92561 5.97198 6.09029 6.16014 6.24996 6.38733 6.45827 6.52209 6.58774 6.66691 6.93867 6.98694 7.03789 7.25085 7.53783 7.61268 7.75467 7.82712 8.29257 8.71255 8.92084 9.47644 10.95874 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.007249 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.297659 B = 3861.526795 C = 4765.118694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.068 3.932 10 H 0.072 0.928 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.056 4.056 14 C 0.110 3.890 15 N -0.492 5.492 16 C 0.129 3.871 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.167 4.167 20 C -0.184 4.184 21 C -0.060 4.060 22 C -0.080 4.080 23 H 0.262 0.738 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -9.096 -4.827 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.049 3.951 10 H 0.090 0.910 11 C -0.140 4.140 12 C -0.161 4.161 13 C -0.094 4.094 14 C -0.025 4.025 15 N -0.201 5.201 16 C -0.011 4.011 17 C -0.112 4.112 18 C -0.214 4.214 19 C -0.205 4.205 20 C -0.204 4.204 21 C -0.086 4.086 22 C -0.082 4.082 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.659 -9.831 -4.563 11.797 hybrid contribution 0.467 1.889 -0.283 1.966 sum 5.126 -7.942 -4.845 10.622 Atomic orbital electron populations 1.69934 1.05941 1.26774 1.50023 1.24979 0.94836 0.99175 0.94668 0.86572 0.80278 0.83719 0.77734 1.19659 1.20877 1.20926 1.21056 0.93197 0.89760 1.50749 0.92557 1.17899 0.95729 0.90664 0.90769 0.91025 1.21656 0.99591 0.92750 0.99964 1.21678 0.97155 0.97308 0.99970 1.20219 0.97358 0.98400 0.93437 1.20997 0.95637 0.90076 0.95780 1.67046 1.08267 1.39295 1.05521 1.19881 0.96627 0.91624 0.92990 1.20647 1.01158 1.00515 0.88866 1.23048 0.99801 1.00184 0.98413 1.22916 0.98209 0.97590 1.01768 1.21845 1.02467 0.94336 1.01737 1.21768 0.93361 1.00170 0.93292 1.21358 0.96900 0.94322 0.95647 0.92785 0.93530 0.91862 0.92570 0.92269 0.91021 0.91284 0.86918 0.88328 0.88538 0.88700 0.88876 0.85967 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 12.84 55.43 0.71 -23.93 16 2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.34 6.94 -34.44 -0.24 -13.57 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.07 1.64 2.25 -93.14 -0.21 1.44 16 10 H 0.07 1.92 7.38 -51.93 -0.38 1.54 16 11 C -0.10 -2.21 5.25 -26.68 -0.14 -2.35 16 12 C -0.12 -2.24 5.97 -26.71 -0.16 -2.40 16 13 C -0.06 -1.01 5.91 -28.02 -0.17 -1.17 16 14 C 0.11 2.27 6.62 -82.44 -0.55 1.72 16 15 N -0.49 -9.82 10.10 -5.77 -0.06 -9.87 16 16 C 0.13 2.33 6.46 -82.73 -0.53 1.80 16 17 C -0.09 -1.32 6.22 -91.77 -0.57 -1.89 16 18 C -0.18 -2.02 9.80 -26.72 -0.26 -2.28 16 19 C -0.17 -2.02 10.23 -26.72 -0.27 -2.29 16 20 C -0.18 -3.33 9.37 -39.52 -0.37 -3.70 16 21 C -0.06 -1.26 9.15 -39.17 -0.36 -1.61 16 22 C -0.08 -1.78 5.41 -104.60 -0.57 -2.35 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 25 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.10 1.12 6.40 -51.93 -0.33 0.79 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.12 1.85 6.27 -52.49 -0.33 1.52 16 36 H 0.14 2.94 7.36 -52.49 -0.39 2.55 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -28.05 293.68 -9.63 -37.69 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.20 Total: 3.14 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -4.49 Total: -27.02 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.65 Total: -33.80 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.05 -9.63 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260891003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.899 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds