Wall clock time and date at job start Mon Mar 30 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48495 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47169 * 299.99951 * 3 2 1 6 6 H 1.48500 * 109.47215 * 60.00170 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99859 * 185.72160 * 7 2 1 9 9 C 1.50697 * 119.99848 * 5.72743 * 7 2 1 10 10 H 1.08998 * 109.25732 * 335.57818 * 9 7 2 11 11 C 1.52766 * 109.26184 * 95.06584 * 9 7 2 12 12 C 1.53328 * 108.36386 * 171.13797 * 11 9 7 13 13 C 1.52727 * 108.61082 * 290.05715 * 12 11 9 14 14 C 1.51188 * 110.31825 * 51.24384 * 13 12 11 15 15 N 1.32699 * 117.47910 * 162.43981 * 14 13 12 16 16 C 1.31519 * 122.39829 * 179.36461 * 15 14 13 17 17 C 1.50705 * 119.69054 * 180.02562 * 16 15 14 18 18 C 1.52999 * 117.49410 * 163.64519 * 17 16 15 19 19 C 1.52992 * 117.50022 * 95.02289 * 17 16 15 20 20 C 1.38234 * 120.61089 * 0.08464 * 16 15 14 21 21 C 1.38412 * 118.84370 * 0.10826 * 20 16 15 22 22 C 1.37607 * 122.42300 * 342.13570 * 14 13 12 23 23 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.68677 * 51.41327 * 11 9 7 25 25 H 1.09009 * 109.71280 * 290.86782 * 11 9 7 26 26 H 1.09000 * 109.63948 * 49.84851 * 12 11 9 27 27 H 1.08991 * 109.64318 * 170.26916 * 12 11 9 28 28 H 1.08998 * 109.24931 * 171.69627 * 13 12 11 29 29 H 1.08996 * 109.25634 * 291.13391 * 13 12 11 30 30 H 1.09001 * 115.54680 * 309.35106 * 17 16 15 31 31 H 1.08990 * 117.49923 * 359.97438 * 18 17 16 32 32 H 1.09007 * 117.49454 * 145.02006 * 18 17 16 33 33 H 1.08996 * 117.49955 * 214.97806 * 19 17 16 34 34 H 1.09001 * 117.50131 * 359.97149 * 19 17 16 35 35 H 1.07999 * 120.57768 * 180.13102 * 20 16 15 36 36 H 1.07999 * 120.55969 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0805 -1.1963 0.0938 9 6 1.2567 -2.4959 -0.1291 10 1 0.2322 -2.3579 0.2163 11 6 1.2408 -2.9241 -1.5955 12 6 0.6763 -4.3473 -1.6770 13 6 1.6968 -5.3116 -1.0757 14 6 2.1265 -4.8348 0.2931 15 7 2.7185 -5.7151 1.0902 16 6 3.1419 -5.4015 2.2952 17 6 3.8071 -6.4501 3.1491 18 6 4.6137 -5.9698 4.3573 19 6 5.3354 -6.5165 3.1240 20 6 2.9814 -4.1193 2.7862 21 6 2.3650 -3.1711 1.9883 22 6 1.9292 -3.5413 0.7194 23 1 -0.4850 0.8400 0.0004 24 1 2.2553 -2.9080 -1.9937 25 1 0.6100 -2.2455 -2.1698 26 1 -0.2565 -4.4042 -1.1160 27 1 0.4938 -4.6100 -2.7190 28 1 1.2496 -6.3022 -0.9927 29 1 2.5686 -5.3648 -1.7277 30 1 3.2640 -7.3901 3.2475 31 1 4.6635 -4.8955 4.5342 32 1 4.6013 -6.5939 5.2510 33 1 5.7978 -7.5000 3.2061 34 1 5.8598 -5.8020 2.4894 35 1 3.3312 -3.8618 3.7750 36 1 2.2249 -2.1611 2.3442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260891005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:32 Heat of formation + Delta-G solvation = 35.320871 kcal Electronic energy + Delta-G solvation = -17183.208461 eV Core-core repulsion = 14631.797609 eV Total energy + Delta-G solvation = -2551.410851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01832 -37.37076 -35.29134 -33.30784 -31.78085 -29.51665 -28.91262 -25.09187 -24.01763 -22.96936 -21.99969 -21.05945 -20.58959 -18.58679 -16.58159 -16.25271 -15.75949 -14.81546 -14.72458 -14.43479 -13.74687 -13.41472 -12.84698 -12.72821 -12.60945 -12.03384 -11.83633 -11.60150 -11.41087 -11.22146 -11.02265 -10.84860 -10.53628 -10.35368 -10.24096 -10.15794 -9.80992 -9.50976 -9.20313 -8.79741 -8.58717 -8.47139 -7.71730 -6.12876 -4.16228 1.85732 2.10028 3.22779 3.31961 3.36178 3.86674 4.32672 4.43317 4.60818 4.97587 5.09792 5.16690 5.22050 5.41202 5.58141 5.63222 5.75387 5.80151 5.85738 5.93364 5.97381 6.08842 6.17397 6.26074 6.37483 6.45888 6.50928 6.58465 6.65687 6.92267 6.98381 7.04347 7.22209 7.54055 7.60818 7.75506 7.81408 8.29015 8.72354 8.92735 9.47179 10.95392 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.007316 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.001284 B = 3826.390036 C = 4704.849810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.065 3.935 10 H 0.077 0.923 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.055 4.055 14 C 0.108 3.892 15 N -0.492 5.492 16 C 0.128 3.872 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.167 4.167 20 C -0.184 4.184 21 C -0.059 4.059 22 C -0.079 4.079 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -9.171 3.805 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.046 3.954 10 H 0.095 0.905 11 C -0.140 4.140 12 C -0.161 4.161 13 C -0.093 4.093 14 C -0.027 4.027 15 N -0.201 5.201 16 C -0.012 4.012 17 C -0.112 4.112 18 C -0.214 4.214 19 C -0.205 4.205 20 C -0.204 4.204 21 C -0.085 4.085 22 C -0.081 4.081 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.900 -9.883 3.487 11.569 hybrid contribution 0.374 1.850 0.376 1.925 sum 5.274 -8.033 3.863 10.357 Atomic orbital electron populations 1.69910 1.05941 1.26798 1.50155 1.24978 0.94834 0.99217 0.94560 0.86567 0.80265 0.83693 0.77734 1.19678 1.20818 1.20968 1.21045 0.93234 0.89797 1.50673 0.92605 1.17948 0.97908 0.90103 0.89462 0.90484 1.21678 0.99451 0.92994 0.99924 1.21678 0.98130 0.96976 0.99342 1.20295 0.99068 0.98772 0.91177 1.21099 0.96307 0.89714 0.95561 1.67042 1.10946 1.37707 1.04439 1.19880 0.97926 0.92089 0.91289 1.20643 0.93157 0.98807 0.98561 1.23046 1.04268 1.01877 0.92258 1.22914 0.94002 1.02539 1.01052 1.21846 1.03272 0.94281 1.00982 1.21776 0.93849 0.99633 0.93230 1.21335 0.96315 0.94747 0.95688 0.92742 0.93432 0.92190 0.92224 0.92567 0.91236 0.91076 0.86925 0.88324 0.88543 0.88708 0.88870 0.85980 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 12.75 55.43 0.71 -23.99 16 2 C 0.07 1.76 5.45 -17.82 -0.10 1.67 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.33 6.93 -34.44 -0.24 -13.56 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.06 1.56 2.34 -93.14 -0.22 1.34 16 10 H 0.08 2.07 7.20 -51.93 -0.37 1.70 16 11 C -0.10 -2.21 5.25 -26.68 -0.14 -2.35 16 12 C -0.12 -2.22 5.95 -26.70 -0.16 -2.38 16 13 C -0.06 -0.99 5.96 -27.78 -0.17 -1.15 16 14 C 0.11 2.23 6.63 -82.21 -0.55 1.69 16 15 N -0.49 -9.84 10.10 -5.63 -0.06 -9.90 16 16 C 0.13 2.33 6.46 -82.72 -0.53 1.80 16 17 C -0.09 -1.33 6.22 -91.77 -0.57 -1.90 16 18 C -0.18 -2.04 9.80 -26.73 -0.26 -2.30 16 19 C -0.17 -2.06 10.23 -26.74 -0.27 -2.33 16 20 C -0.18 -3.36 9.37 -39.52 -0.37 -3.73 16 21 C -0.06 -1.25 9.15 -39.17 -0.36 -1.60 16 22 C -0.08 -1.76 5.42 -104.60 -0.57 -2.32 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 26 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.10 1.14 6.40 -51.93 -0.33 0.81 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 36 H 0.14 3.00 7.34 -52.49 -0.39 2.62 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -28.06 293.54 -9.64 -37.69 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.19 Total: 3.33 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -4.50 Total: -27.14 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.65 Total: -33.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.06 -9.64 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260891005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.015 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds