Wall clock time and date at job start Mon Mar 30 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48495 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47169 * 299.99951 * 3 2 1 6 6 H 1.48500 * 109.47215 * 60.00170 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99859 * 185.72160 * 7 2 1 9 9 C 1.50697 * 119.99848 * 5.72743 * 7 2 1 10 10 H 1.08998 * 109.25732 * 335.57818 * 9 7 2 11 11 C 1.52766 * 109.26184 * 95.06584 * 9 7 2 12 12 C 1.53328 * 108.36386 * 171.13797 * 11 9 7 13 13 C 1.52727 * 108.61082 * 290.05715 * 12 11 9 14 14 C 1.51188 * 110.31825 * 51.24384 * 13 12 11 15 15 N 1.32699 * 117.47910 * 162.43981 * 14 13 12 16 16 C 1.31519 * 122.39829 * 179.36461 * 15 14 13 17 17 C 1.50705 * 119.69054 * 180.02562 * 16 15 14 18 18 C 1.52999 * 117.49410 * 163.64519 * 17 16 15 19 19 C 1.52992 * 117.50022 * 95.02289 * 17 16 15 20 20 C 1.38234 * 120.61089 * 0.08464 * 16 15 14 21 21 C 1.38412 * 118.84370 * 0.10826 * 20 16 15 22 22 C 1.37607 * 122.42300 * 342.13570 * 14 13 12 23 23 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.68677 * 51.41327 * 11 9 7 25 25 H 1.09009 * 109.71280 * 290.86782 * 11 9 7 26 26 H 1.09000 * 109.63948 * 49.84851 * 12 11 9 27 27 H 1.08991 * 109.64318 * 170.26916 * 12 11 9 28 28 H 1.08998 * 109.24931 * 171.69627 * 13 12 11 29 29 H 1.08996 * 109.25634 * 291.13391 * 13 12 11 30 30 H 1.09001 * 115.54680 * 309.35106 * 17 16 15 31 31 H 1.08990 * 117.49923 * 359.97438 * 18 17 16 32 32 H 1.09007 * 117.49454 * 145.02006 * 18 17 16 33 33 H 1.08996 * 117.49955 * 214.97806 * 19 17 16 34 34 H 1.09001 * 117.50131 * 359.97149 * 19 17 16 35 35 H 1.07999 * 120.57768 * 180.13102 * 20 16 15 36 36 H 1.07999 * 120.55969 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0805 -1.1963 0.0938 9 6 1.2567 -2.4959 -0.1291 10 1 0.2322 -2.3579 0.2163 11 6 1.2408 -2.9241 -1.5955 12 6 0.6763 -4.3473 -1.6770 13 6 1.6968 -5.3116 -1.0757 14 6 2.1265 -4.8348 0.2931 15 7 2.7185 -5.7151 1.0902 16 6 3.1419 -5.4015 2.2952 17 6 3.8071 -6.4501 3.1491 18 6 4.6137 -5.9698 4.3573 19 6 5.3354 -6.5165 3.1240 20 6 2.9814 -4.1193 2.7862 21 6 2.3650 -3.1711 1.9883 22 6 1.9292 -3.5413 0.7194 23 1 -0.4850 0.8400 0.0004 24 1 2.2553 -2.9080 -1.9937 25 1 0.6100 -2.2455 -2.1698 26 1 -0.2565 -4.4042 -1.1160 27 1 0.4938 -4.6100 -2.7190 28 1 1.2496 -6.3022 -0.9927 29 1 2.5686 -5.3648 -1.7277 30 1 3.2640 -7.3901 3.2475 31 1 4.6635 -4.8955 4.5342 32 1 4.6013 -6.5939 5.2510 33 1 5.7978 -7.5000 3.2061 34 1 5.8598 -5.8020 2.4894 35 1 3.3312 -3.8618 3.7750 36 1 2.2249 -2.1611 2.3442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260891005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:32 Heat of formation + Delta-G solvation = 21.617921 kcal Electronic energy + Delta-G solvation = -17183.802665 eV Core-core repulsion = 14631.797609 eV Total energy + Delta-G solvation = -2552.005056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53640 -38.64844 -36.74757 -35.07167 -33.56281 -31.02195 -30.61473 -26.97166 -25.46510 -24.37963 -23.08766 -22.74317 -21.95884 -20.12327 -18.55288 -17.49779 -17.38853 -16.58324 -16.12927 -15.82246 -15.19003 -14.91677 -14.53147 -14.34349 -14.20943 -13.71742 -13.36450 -13.01832 -12.93184 -12.67115 -12.65294 -12.29384 -12.16355 -11.99120 -11.56496 -11.41275 -11.35382 -11.16995 -11.00750 -10.62608 -10.35541 -10.08973 -9.30843 -8.16673 -6.26106 0.32293 0.50623 1.36934 1.40219 1.50908 2.39218 2.75913 3.01067 3.12325 3.32740 3.81273 3.99499 4.02486 4.11958 4.22238 4.25680 4.35545 4.37673 4.45479 4.57130 4.80567 4.86981 4.89721 4.95194 4.98660 5.03013 5.12532 5.17969 5.27284 5.31401 5.36466 5.40599 5.54358 5.60131 5.80893 5.93562 6.01241 6.31301 6.86461 7.19463 7.39572 8.91281 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.007316 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.001284 B = 3826.390036 C = 4704.849810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.045 0.955 9 C 0.067 3.933 10 H 0.038 0.962 11 C -0.098 4.098 12 C -0.112 4.112 13 C -0.052 4.052 14 C 0.101 3.899 15 N -0.502 5.502 16 C 0.132 3.868 17 C -0.118 4.118 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.181 4.181 21 C -0.076 4.076 22 C -0.111 4.111 23 H 0.264 0.736 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 -10.795 4.571 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.048 3.952 10 H 0.056 0.944 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.090 4.090 14 C -0.033 4.033 15 N -0.212 5.212 16 C -0.009 4.009 17 C -0.137 4.137 18 C -0.194 4.194 19 C -0.198 4.198 20 C -0.200 4.200 21 C -0.102 4.102 22 C -0.113 4.113 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.170 0.830 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.465 -11.511 4.251 13.870 hybrid contribution -0.059 2.283 0.219 2.294 sum 6.406 -9.228 4.470 12.091 Atomic orbital electron populations 1.70029 1.07242 1.27487 1.51489 1.25673 0.95541 1.02255 0.94492 0.85619 0.79032 0.79918 0.77821 1.19390 1.20388 1.20484 1.21242 0.92795 0.91225 1.50087 0.93656 1.17779 0.95726 0.90395 0.91333 0.94373 1.21525 0.99141 0.95136 0.97799 1.21584 0.97607 0.94509 1.01331 1.20354 0.99443 0.99344 0.89820 1.21464 0.95873 0.89118 0.96857 1.67201 1.11420 1.37340 1.05216 1.20606 0.96247 0.93021 0.90978 1.20734 0.94355 0.98390 1.00199 1.23187 1.01449 1.02374 0.92439 1.22996 0.92089 1.03628 1.01110 1.22113 1.02229 0.93839 1.01817 1.21778 0.94998 0.99720 0.93666 1.21215 0.98468 0.95374 0.96286 0.92716 0.93621 0.94135 0.92990 0.89296 0.89150 0.89811 0.85898 0.88446 0.85682 0.86249 0.90238 0.82984 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.15 12.75 21.45 0.27 -52.88 16 2 C 0.02 1.05 5.45 84.65 0.46 1.52 16 3 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.52 -28.01 6.93 25.60 0.18 -27.83 16 8 H 0.05 2.50 7.82 -2.91 -0.02 2.47 16 9 C 0.07 3.36 2.34 -12.43 -0.03 3.33 16 10 H 0.04 2.19 7.20 -2.39 -0.02 2.17 16 11 C -0.10 -4.33 5.25 30.63 0.16 -4.17 16 12 C -0.11 -3.97 5.95 30.61 0.18 -3.79 16 13 C -0.05 -1.78 5.96 29.91 0.18 -1.60 16 14 C 0.10 4.15 6.63 42.43 0.28 4.43 16 15 N -0.50 -19.47 10.10 -171.71 -1.73 -21.21 16 16 C 0.13 4.59 6.46 42.61 0.28 4.86 16 17 C -0.12 -3.03 6.22 -11.54 -0.07 -3.10 16 18 C -0.16 -3.01 9.80 30.59 0.30 -2.71 16 19 C -0.16 -3.41 10.23 30.59 0.31 -3.09 16 20 C -0.18 -6.43 9.37 22.31 0.21 -6.22 16 21 C -0.08 -3.27 9.15 22.54 0.21 -3.06 16 22 C -0.11 -5.09 5.42 -19.85 -0.11 -5.20 16 23 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 24 H 0.04 1.99 8.08 -2.39 -0.02 1.97 16 25 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.10 1.91 6.40 -2.39 -0.02 1.89 16 32 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.12 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.15 4.36 6.28 -2.91 -0.02 4.35 16 36 H 0.12 5.57 7.34 -2.91 -0.02 5.55 16 Total: -1.00 -62.21 293.54 4.16 -58.05 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.06 Total: 17.48 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 2.54 Total: -46.64 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.46 Total: -74.09 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.21 4.16 -58.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260891005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -62.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds