Wall clock time and date at job start Mon Mar 30 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46978 * 2 1 4 4 C 1.38836 * 119.73331 * 269.72461 * 3 2 1 5 5 C 1.37751 * 120.66954 * 180.30111 * 4 3 2 6 6 C 1.39127 * 119.77751 * 359.95483 * 5 4 3 7 7 N 1.37683 * 133.50951 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.06181 * 0.02562 * 7 6 5 9 9 C 1.36830 * 109.87422 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.93085 * 359.97438 * 9 7 6 11 11 C 1.50706 * 126.50124 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46448 * 264.99858 * 11 10 9 13 13 C 1.50706 * 109.46827 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99641 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00258 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47298 * 89.99988 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99752 * 17 15 13 20 20 H 1.48504 * 109.47200 * 329.99936 * 17 15 13 21 21 C 1.40672 * 119.33186 * 0.03755 * 6 5 4 22 22 C 1.36625 * 119.74281 * 89.99547 * 3 2 1 23 23 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47608 * 300.00432 * 1 2 3 25 25 H 1.08999 * 109.47303 * 60.00597 * 1 2 3 26 26 H 1.08997 * 109.47168 * 239.99727 * 2 1 3 27 27 H 1.09007 * 109.46560 * 119.99044 * 2 1 3 28 28 H 1.08006 * 119.66409 * 0.24975 * 4 3 2 29 29 H 1.08001 * 120.10785 * 179.97438 * 5 4 3 30 30 H 1.08003 * 125.03286 * 179.97438 * 9 7 6 31 31 H 1.08999 * 109.46827 * 24.99615 * 11 10 9 32 32 H 1.08989 * 109.47083 * 145.00032 * 11 10 9 33 33 H 1.08999 * 109.47407 * 299.99401 * 12 11 10 34 34 H 1.09003 * 109.47450 * 60.00142 * 12 11 10 35 35 H 0.96994 * 119.99914 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.11627 * 359.74102 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2672 2.0681 -1.2056 5 6 2.7323 3.3645 -1.2280 6 6 2.9688 4.0346 -0.0319 7 7 3.4208 5.2988 0.2730 8 1 3.6647 5.9755 -0.3778 9 6 3.4747 5.4586 1.6309 10 6 3.0696 4.3334 2.2405 11 6 2.9819 4.1008 3.7269 12 6 4.2632 3.4205 4.2130 13 6 4.1758 3.1884 5.6995 14 1 3.2946 3.4959 6.2431 15 6 5.2211 2.5847 6.3657 16 7 6.2943 2.2108 5.7038 17 14 5.1130 2.2977 8.2083 18 1 4.5060 0.9674 8.4673 19 1 6.4756 2.3432 8.7971 20 1 4.2716 3.3544 8.8253 21 6 2.7290 3.3744 1.1869 22 6 2.2581 2.0599 1.1863 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8902 28 1 2.0843 1.5496 -2.1352 29 1 2.9124 3.8592 -2.1711 30 1 3.7956 6.3570 2.1372 31 1 2.8614 5.0562 4.2376 32 1 2.1262 3.4619 3.9448 33 1 4.3836 2.4651 3.7023 34 1 5.1190 4.0594 3.9951 35 1 7.0298 1.7864 6.1725 36 1 2.0733 1.5500 2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:47 Heat of formation + Delta-G solvation = 27.069318 kcal Electronic energy + Delta-G solvation = -16585.836568 eV Core-core repulsion = 14034.067903 eV Total energy + Delta-G solvation = -2551.768665 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86275 -37.33394 -34.10768 -32.96468 -32.12237 -30.17759 -28.15551 -27.96659 -24.77029 -23.53344 -22.20455 -21.22187 -20.43769 -18.55490 -17.40541 -16.13901 -15.88945 -15.09372 -14.44717 -14.30911 -14.03387 -13.67407 -13.29380 -12.99665 -12.84067 -12.52014 -12.19279 -11.96803 -11.86636 -11.15670 -10.96113 -10.88983 -10.85305 -10.73832 -10.59996 -10.37627 -9.69743 -9.65854 -9.03991 -8.90717 -8.27552 -7.74109 -7.10288 -5.92533 -3.95194 1.50255 1.94178 3.19149 3.35979 3.42038 3.45453 3.50160 4.23227 4.51831 4.98966 5.01585 5.22592 5.30224 5.42489 5.42728 5.53198 5.66712 5.75377 5.79342 5.90000 6.03346 6.11490 6.17997 6.32137 6.35923 6.42757 6.61641 6.80084 6.86518 7.02788 7.09554 7.16856 7.35323 7.56756 7.78760 7.89907 7.98194 8.10256 8.50207 9.12804 9.68329 11.18445 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.005763 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.214081 B = 4857.558439 C = 5707.750375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.137 4.137 6 C 0.091 3.909 7 N -0.601 5.601 8 H 0.409 0.591 9 C 0.025 3.975 10 C -0.135 4.135 11 C -0.045 4.045 12 C 0.030 3.970 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.097 4.097 22 C -0.054 4.054 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.166 0.834 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 1.717 -13.990 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.158 4.158 6 C -0.016 4.016 7 N -0.205 5.205 8 H 0.245 0.755 9 C -0.098 4.098 10 C -0.142 4.142 11 C -0.083 4.083 12 C -0.007 4.007 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.102 4.102 22 C -0.072 4.072 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.183 0.817 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.445 1.759 -14.002 16.446 hybrid contribution 0.346 0.222 0.676 0.791 sum -8.099 1.981 -13.326 15.719 Atomic orbital electron populations 1.21754 0.95365 1.01112 1.02039 1.20435 0.95670 0.92981 1.02468 1.19251 1.03820 0.96473 0.92784 1.20553 1.00285 0.93772 0.97194 1.19867 1.06183 0.95348 0.94441 1.18262 1.02009 0.86099 0.95264 1.41627 1.59683 1.12281 1.06883 0.75521 1.21572 1.06038 1.00537 0.81678 1.20844 1.05089 0.92180 0.96046 1.20174 1.01085 1.00388 0.86675 1.19053 0.90937 0.95586 0.95096 1.21304 1.02241 1.38751 0.93525 0.92675 1.25019 0.95481 0.95804 0.98124 1.69980 1.06436 1.41355 1.35687 0.86632 0.77185 0.78582 0.85814 1.20697 1.21318 1.19889 1.19173 1.04326 0.94615 0.92113 1.20233 0.96682 0.92592 0.97727 0.92902 0.92516 0.92924 0.91626 0.91113 0.86458 0.86919 0.81690 0.92629 0.92573 0.96504 0.96749 0.93105 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 37.16 0.37 -1.20 16 2 C -0.08 -0.95 6.05 -27.88 -0.17 -1.12 16 3 C -0.12 -1.82 5.10 -104.98 -0.54 -2.35 16 4 C -0.10 -1.35 9.66 -39.54 -0.38 -1.73 16 5 C -0.14 -1.93 10.08 -39.43 -0.40 -2.33 16 6 C 0.09 1.49 7.28 -83.99 -0.61 0.88 16 7 N -0.60 -8.62 6.07 -10.65 -0.06 -8.68 16 8 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 9 C 0.03 0.41 11.73 -16.73 -0.20 0.22 16 10 C -0.14 -2.63 5.57 -102.71 -0.57 -3.20 16 11 C -0.05 -0.98 5.69 -27.88 -0.16 -1.14 16 12 C 0.03 0.81 4.96 -27.88 -0.14 0.68 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.10 -1.83 6.35 -105.14 -0.67 -2.50 16 22 C -0.05 -0.95 9.67 -39.65 -0.38 -1.34 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 28 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.17 2.24 8.06 -52.48 -0.42 1.81 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.20 8.14 -51.94 -0.42 0.77 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -32.44 307.20 -9.37 -41.81 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.40 Total: 0.95 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -4.25 Total: -28.83 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.67 Total: -35.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.44 -9.37 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.879 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds