Wall clock time and date at job start Mon Mar 30 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46978 * 2 1 4 4 C 1.38836 * 119.73331 * 269.72461 * 3 2 1 5 5 C 1.37751 * 120.66954 * 180.30111 * 4 3 2 6 6 C 1.39127 * 119.77751 * 359.95483 * 5 4 3 7 7 N 1.37683 * 133.50951 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.06181 * 0.02562 * 7 6 5 9 9 C 1.36830 * 109.87422 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.93085 * 359.97438 * 9 7 6 11 11 C 1.50706 * 126.50124 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46448 * 264.99858 * 11 10 9 13 13 C 1.50706 * 109.46827 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99641 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00258 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47298 * 89.99988 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99752 * 17 15 13 20 20 H 1.48504 * 109.47200 * 329.99936 * 17 15 13 21 21 C 1.40672 * 119.33186 * 0.03755 * 6 5 4 22 22 C 1.36625 * 119.74281 * 89.99547 * 3 2 1 23 23 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47608 * 300.00432 * 1 2 3 25 25 H 1.08999 * 109.47303 * 60.00597 * 1 2 3 26 26 H 1.08997 * 109.47168 * 239.99727 * 2 1 3 27 27 H 1.09007 * 109.46560 * 119.99044 * 2 1 3 28 28 H 1.08006 * 119.66409 * 0.24975 * 4 3 2 29 29 H 1.08001 * 120.10785 * 179.97438 * 5 4 3 30 30 H 1.08003 * 125.03286 * 179.97438 * 9 7 6 31 31 H 1.08999 * 109.46827 * 24.99615 * 11 10 9 32 32 H 1.08989 * 109.47083 * 145.00032 * 11 10 9 33 33 H 1.08999 * 109.47407 * 299.99401 * 12 11 10 34 34 H 1.09003 * 109.47450 * 60.00142 * 12 11 10 35 35 H 0.96994 * 119.99914 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.11627 * 359.74102 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2672 2.0681 -1.2056 5 6 2.7323 3.3645 -1.2280 6 6 2.9688 4.0346 -0.0319 7 7 3.4208 5.2988 0.2730 8 1 3.6647 5.9755 -0.3778 9 6 3.4747 5.4586 1.6309 10 6 3.0696 4.3334 2.2405 11 6 2.9819 4.1008 3.7269 12 6 4.2632 3.4205 4.2130 13 6 4.1758 3.1884 5.6995 14 1 3.2946 3.4959 6.2431 15 6 5.2211 2.5847 6.3657 16 7 6.2943 2.2108 5.7038 17 14 5.1130 2.2977 8.2083 18 1 4.5060 0.9674 8.4673 19 1 6.4756 2.3432 8.7971 20 1 4.2716 3.3544 8.8253 21 6 2.7290 3.3744 1.1869 22 6 2.2581 2.0599 1.1863 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8902 28 1 2.0843 1.5496 -2.1352 29 1 2.9124 3.8592 -2.1711 30 1 3.7956 6.3570 2.1372 31 1 2.8614 5.0562 4.2376 32 1 2.1262 3.4619 3.9448 33 1 4.3836 2.4651 3.7023 34 1 5.1190 4.0594 3.9951 35 1 7.0298 1.7864 6.1725 36 1 2.0733 1.5500 2.1202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:46 Heat of formation + Delta-G solvation = 9.240037 kcal Electronic energy + Delta-G solvation = -16586.609704 eV Core-core repulsion = 14034.067903 eV Total energy + Delta-G solvation = -2552.541801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10377 -38.49433 -36.02750 -34.19450 -33.81397 -31.70166 -29.54134 -29.27243 -26.71767 -24.60705 -23.44991 -23.10342 -21.60646 -19.96399 -18.78113 -18.27182 -17.08150 -16.50869 -16.21952 -15.44456 -15.26692 -15.10296 -14.56348 -14.45242 -14.20019 -13.97536 -13.82138 -13.36725 -13.14139 -12.98112 -12.80050 -12.47331 -12.12011 -12.00745 -11.82271 -11.70040 -11.61887 -11.44636 -11.15374 -10.54204 -10.33648 -8.95248 -8.42412 -8.15969 -6.29790 0.27934 0.73779 1.40152 1.42354 1.53483 1.85069 2.34833 2.42989 2.99986 3.14798 3.83628 3.98435 4.04245 4.26787 4.32002 4.49406 4.50210 4.60754 4.66590 4.76003 4.89041 4.94617 5.02957 5.03792 5.13340 5.20873 5.24471 5.29241 5.43024 5.52421 5.56604 5.75549 5.83666 5.88313 5.91682 5.99273 6.26936 6.32722 6.84666 6.88247 7.39486 8.94347 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.005763 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.214081 B = 4857.558439 C = 5707.750375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.076 3.924 7 N -0.584 5.584 8 H 0.431 0.569 9 C 0.050 3.950 10 C -0.192 4.192 11 C -0.027 4.027 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.260 1.260 21 C -0.130 4.130 22 C -0.094 4.094 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.194 0.806 31 H 0.066 0.934 32 H 0.046 0.954 33 H -0.022 1.022 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 2.265 -15.507 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.148 4.148 6 C -0.031 4.031 7 N -0.189 5.189 8 H 0.271 0.729 9 C -0.076 4.076 10 C -0.199 4.199 11 C -0.065 4.065 12 C 0.005 3.995 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.135 4.135 22 C -0.113 4.113 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.211 0.789 31 H 0.084 0.916 32 H 0.065 0.935 33 H -0.003 1.003 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.161 2.325 -15.555 18.201 hybrid contribution 0.571 0.033 1.044 1.190 sum -8.591 2.358 -14.511 17.027 Atomic orbital electron populations 1.21714 0.94060 1.02261 1.01765 1.20516 0.96763 0.91446 1.02970 1.19608 1.02123 0.97512 0.92411 1.21007 0.99213 0.93873 0.97873 1.20342 1.04163 0.95339 0.94968 1.18532 1.02670 0.86700 0.95234 1.41562 1.58476 1.12242 1.06581 0.72943 1.21905 1.02955 1.00178 0.82530 1.20722 1.09598 0.94575 0.94978 1.19799 0.97748 0.99868 0.89068 1.18866 0.92705 0.93620 0.94353 1.21745 1.02672 1.38988 0.94655 0.91963 1.26021 0.94881 0.95210 1.03785 1.70130 1.07337 1.42100 1.38044 0.85425 0.77581 0.78946 0.78957 1.19866 1.20656 1.18418 1.19451 1.05476 0.95288 0.93309 1.20264 0.99731 0.93152 0.98138 0.91055 0.94154 0.91812 0.89246 0.92457 0.82691 0.83135 0.78901 0.91559 0.93540 1.00326 0.99334 0.92852 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.08 -1.89 6.05 29.85 0.18 -1.71 16 3 C -0.12 -3.41 5.10 -20.10 -0.10 -3.51 16 4 C -0.10 -2.48 9.66 22.30 0.22 -2.26 16 5 C -0.13 -3.21 10.08 22.37 0.23 -2.98 16 6 C 0.08 2.40 7.28 39.03 0.28 2.69 16 7 N -0.58 -15.62 6.07 -187.61 -1.14 -16.76 16 8 H 0.43 7.64 8.96 -92.71 -0.83 6.81 16 9 C 0.05 1.60 11.73 83.00 0.97 2.57 16 10 C -0.19 -7.76 5.57 -18.63 -0.10 -7.86 16 11 C -0.03 -1.22 5.69 29.85 0.17 -1.05 16 12 C 0.04 2.38 4.96 29.85 0.15 2.52 16 13 C -0.54 -32.28 9.11 25.60 0.23 -32.04 16 14 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.94 -59.32 13.29 21.45 0.28 -59.03 16 17 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.13 -5.09 6.35 -20.20 -0.13 -5.22 16 22 C -0.09 -3.54 9.67 22.23 0.22 -3.33 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 27 H 0.06 1.49 8.08 -2.38 -0.02 1.47 16 28 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.19 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.10 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -73.68 307.20 4.89 -68.80 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.23 Total: 13.46 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 3.48 Total: -53.97 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -0.85 Total: -75.80 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -73.68 4.89 -68.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.039 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds