Wall clock time and date at job start Mon Mar 30 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47556 * 2 1 4 4 C 1.50700 * 109.47390 * 120.00270 * 2 1 3 5 5 H 1.08005 * 120.00225 * 119.99624 * 4 2 1 6 6 C 1.37879 * 119.99884 * 299.99812 * 4 2 1 7 7 N 1.31513 * 120.00031 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99795 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46931 * 90.00084 * 8 6 4 10 10 H 1.48503 * 109.46725 * 209.99586 * 8 6 4 11 11 H 1.48497 * 109.47057 * 329.99845 * 8 6 4 12 12 C 1.50702 * 109.47052 * 240.00186 * 2 1 3 13 13 C 1.38281 * 119.93630 * 119.99934 * 12 2 1 14 14 C 1.38116 * 120.06843 * 179.97438 * 13 12 2 15 15 C 1.38838 * 119.93384 * 0.02836 * 14 13 12 16 16 N 1.40210 * 120.06721 * 179.97438 * 15 14 13 17 17 N 1.28598 * 124.60572 * 0.03848 * 16 15 14 18 18 C 1.31424 * 108.72053 * 179.97438 * 17 16 15 19 19 C 1.39745 * 105.88358 * 359.97438 * 18 17 16 20 20 N 1.28591 * 124.60889 * 179.97438 * 16 15 14 21 21 C 1.38838 * 119.86768 * 0.26562 * 15 14 13 22 22 C 1.38123 * 119.92819 * 359.41263 * 21 15 14 23 23 H 1.08996 * 109.47045 * 299.99637 * 1 2 3 24 24 H 1.08999 * 109.47358 * 60.00261 * 1 2 3 25 25 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99921 * 179.97438 * 7 6 4 27 27 H 1.07997 * 119.96294 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.03410 * 180.02562 * 14 13 12 29 29 H 1.07997 * 127.05793 * 180.26038 * 18 17 16 30 30 H 1.08007 * 127.05339 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.03749 * 179.71061 * 21 15 14 32 32 H 1.08001 * 119.96361 * 180.31444 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8027 0.8725 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1764 1.4920 12 6 2.0323 -0.7104 -1.2305 13 6 2.8272 -0.0371 -2.1399 14 6 3.2895 -0.6856 -3.2683 15 6 2.9549 -2.0148 -3.4894 16 7 3.4222 -2.6757 -4.6342 17 7 4.1652 -2.1382 -5.5357 18 6 4.4172 -3.0339 -6.4638 19 6 3.7584 -4.1984 -6.0604 20 7 3.1671 -3.9021 -4.9248 21 6 2.1516 -2.6864 -2.5777 22 6 1.6978 -2.0344 -1.4478 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9034 -0.5281 4.4375 27 1 3.0874 0.9968 -1.9671 28 1 3.9106 -0.1593 -3.9779 29 1 5.0150 -2.8992 -7.3531 30 1 3.7388 -5.1470 -6.5764 31 1 1.8858 -3.7190 -2.7494 32 1 1.0771 -2.5579 -0.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:07 Heat of formation + Delta-G solvation = 142.574341 kcal Electronic energy + Delta-G solvation = -16440.779717 eV Core-core repulsion = 13790.479382 eV Total energy + Delta-G solvation = -2650.300335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.71354 -39.11140 -35.19199 -32.99104 -32.62769 -31.38347 -30.59833 -28.38054 -25.17156 -24.06889 -23.53850 -21.66636 -21.33835 -19.74970 -18.21975 -16.69488 -16.62737 -15.49784 -15.25628 -15.08910 -14.43625 -14.19310 -13.58373 -13.21179 -12.82019 -12.63319 -12.33456 -12.20206 -11.65587 -11.31362 -11.08728 -11.00188 -10.63347 -10.40948 -10.33072 -10.06865 -9.98079 -9.47030 -9.19907 -8.66116 -8.64597 -7.82364 -6.15453 -4.16698 1.04110 1.70705 2.37555 2.39740 2.41175 3.21649 3.31905 3.34676 4.14388 4.15057 4.33004 4.86657 5.14359 5.18379 5.23487 5.25726 5.51355 5.71759 5.81841 5.87903 5.96784 6.13618 6.21242 6.30878 6.35983 6.52996 6.59664 6.74031 6.85970 6.91495 6.98777 7.33931 7.43354 7.62269 8.33449 8.40513 8.87829 9.44645 10.97128 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.055086 B = 0.004994 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.170109 B = 5605.597233 C = 5740.705723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.011 4.011 13 C -0.116 4.116 14 C -0.100 4.100 15 C 0.100 3.900 16 N -0.086 5.086 17 N -0.290 5.290 18 C -0.032 4.032 19 C -0.031 4.031 20 N -0.288 5.288 21 C -0.101 4.101 22 C -0.092 4.092 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.199 0.801 30 H 0.199 0.801 31 H 0.134 0.866 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -2.184 -16.419 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.057 0.943 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.719 3.281 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.191 1.191 12 C -0.012 4.012 13 C -0.134 4.134 14 C -0.121 4.121 15 C 0.011 3.989 16 N 0.020 4.980 17 N -0.130 5.130 18 C -0.214 4.214 19 C -0.213 4.213 20 N -0.128 5.128 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.216 0.784 30 H 0.216 0.784 31 H 0.152 0.848 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.419 -1.581 -15.158 15.246 hybrid contribution -0.108 0.164 -0.669 0.697 sum 0.311 -1.417 -15.827 15.893 Atomic orbital electron populations 1.22177 0.98046 1.01149 0.98879 1.18418 0.92194 0.96367 0.91380 0.94262 1.20915 1.32530 1.13752 0.87907 0.90445 1.24990 0.95618 0.96612 0.95742 1.69883 1.45259 1.40212 0.97999 0.86839 0.80591 0.83690 0.77023 1.20514 1.22455 1.19095 1.20483 0.92355 0.93733 0.94623 1.21028 0.98683 1.00467 0.93262 1.20780 1.00732 0.91780 0.98785 1.17357 1.03463 0.92635 0.85467 1.44968 1.31987 1.04975 1.16043 1.74077 1.11022 1.27697 1.00188 1.24852 1.05020 0.90611 1.00871 1.24860 1.00629 1.01645 0.94204 1.74093 1.22320 0.99352 1.17029 1.20889 0.97222 1.00455 0.93578 1.21036 0.99945 0.94542 0.95564 0.93841 0.94924 0.92553 0.92473 0.85067 0.84932 0.78443 0.78425 0.84843 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.49 37.16 0.32 -2.63 16 2 C 0.04 0.78 2.07 -92.92 -0.19 0.58 16 3 H 0.04 0.87 6.93 -51.93 -0.36 0.51 16 4 C -0.51 -13.64 8.82 -34.44 -0.30 -13.94 16 5 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 8 Si 0.89 21.03 24.37 -169.99 -4.14 16.89 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.27 -5.97 6.53 56.52 0.37 -5.60 16 12 C -0.01 -0.22 4.74 -104.59 -0.50 -0.71 16 13 C -0.12 -1.99 9.66 -39.61 -0.38 -2.38 16 14 C -0.10 -1.65 9.59 -39.40 -0.38 -2.02 16 15 C 0.10 1.72 6.72 -83.58 -0.56 1.16 16 16 N -0.09 -1.43 4.13 32.49 0.13 -1.29 16 17 N -0.29 -4.41 11.21 30.70 0.34 -4.07 16 18 C -0.03 -0.36 12.20 -17.16 -0.21 -0.57 16 19 C -0.03 -0.36 12.20 -17.17 -0.21 -0.57 16 20 N -0.29 -4.44 11.21 30.70 0.34 -4.10 16 21 C -0.10 -1.72 9.59 -39.40 -0.38 -2.10 16 22 C -0.09 -1.69 8.70 -39.61 -0.34 -2.04 16 23 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.13 2.02 7.94 -52.49 -0.42 1.60 16 28 H 0.13 1.98 7.63 -52.49 -0.40 1.58 16 29 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.13 2.11 7.63 -52.49 -0.40 1.71 16 32 H 0.14 2.54 7.57 -52.49 -0.40 2.14 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -30.91 272.36 -5.07 -35.97 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.39 Total: 1.59 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -3.24 Total: -23.32 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 1.60 Total: -35.24 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.91 -5.07 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.548 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds