Wall clock time and date at job start Mon Mar 30 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47556 * 2 1 4 4 C 1.50700 * 109.47390 * 120.00270 * 2 1 3 5 5 H 1.08005 * 120.00225 * 119.99624 * 4 2 1 6 6 C 1.37879 * 119.99884 * 299.99812 * 4 2 1 7 7 N 1.31513 * 120.00031 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99795 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46931 * 90.00084 * 8 6 4 10 10 H 1.48503 * 109.46725 * 209.99586 * 8 6 4 11 11 H 1.48497 * 109.47057 * 329.99845 * 8 6 4 12 12 C 1.50702 * 109.47052 * 240.00186 * 2 1 3 13 13 C 1.38281 * 119.93630 * 119.99934 * 12 2 1 14 14 C 1.38116 * 120.06843 * 179.97438 * 13 12 2 15 15 C 1.38838 * 119.93384 * 0.02836 * 14 13 12 16 16 N 1.40210 * 120.06721 * 179.97438 * 15 14 13 17 17 N 1.28598 * 124.60572 * 0.03848 * 16 15 14 18 18 C 1.31424 * 108.72053 * 179.97438 * 17 16 15 19 19 C 1.39745 * 105.88358 * 359.97438 * 18 17 16 20 20 N 1.28591 * 124.60889 * 179.97438 * 16 15 14 21 21 C 1.38838 * 119.86768 * 0.26562 * 15 14 13 22 22 C 1.38123 * 119.92819 * 359.41263 * 21 15 14 23 23 H 1.08996 * 109.47045 * 299.99637 * 1 2 3 24 24 H 1.08999 * 109.47358 * 60.00261 * 1 2 3 25 25 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99921 * 179.97438 * 7 6 4 27 27 H 1.07997 * 119.96294 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.03410 * 180.02562 * 14 13 12 29 29 H 1.07997 * 127.05793 * 180.26038 * 18 17 16 30 30 H 1.08007 * 127.05339 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.03749 * 179.71061 * 21 15 14 32 32 H 1.08001 * 119.96361 * 180.31444 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8027 0.8725 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1764 1.4920 12 6 2.0323 -0.7104 -1.2305 13 6 2.8272 -0.0371 -2.1399 14 6 3.2895 -0.6856 -3.2683 15 6 2.9549 -2.0148 -3.4894 16 7 3.4222 -2.6757 -4.6342 17 7 4.1652 -2.1382 -5.5357 18 6 4.4172 -3.0339 -6.4638 19 6 3.7584 -4.1984 -6.0604 20 7 3.1671 -3.9021 -4.9248 21 6 2.1516 -2.6864 -2.5777 22 6 1.6978 -2.0344 -1.4478 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9034 -0.5281 4.4375 27 1 3.0874 0.9968 -1.9671 28 1 3.9106 -0.1593 -3.9779 29 1 5.0150 -2.8992 -7.3531 30 1 3.7388 -5.1470 -6.5764 31 1 1.8858 -3.7190 -2.7494 32 1 1.0771 -2.5579 -0.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:06 Heat of formation + Delta-G solvation = 122.991576 kcal Electronic energy + Delta-G solvation = -16441.628890 eV Core-core repulsion = 13790.479382 eV Total energy + Delta-G solvation = -2651.149508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.74457 -40.48471 -36.76072 -34.53660 -33.69212 -33.11007 -31.92497 -29.71710 -27.07847 -25.40874 -24.67143 -22.94333 -22.63109 -21.26677 -19.39196 -18.66816 -17.71876 -17.17223 -16.45544 -16.12181 -15.96305 -15.43563 -14.99477 -14.78188 -14.40879 -14.16109 -13.89313 -13.85327 -12.95803 -12.84679 -12.60509 -12.36966 -12.05294 -11.84083 -11.72093 -11.49262 -11.32326 -11.25108 -10.97276 -10.71194 -10.00095 -9.14315 -8.27366 -6.32343 -0.19833 0.35686 1.20194 1.26440 1.35035 1.40212 1.50605 1.55001 2.34892 2.76921 3.08941 3.22342 3.88143 3.90456 4.01164 4.04250 4.39323 4.43645 4.46825 4.62286 4.69979 4.79729 4.84808 5.00879 5.05401 5.14348 5.15678 5.34735 5.40485 5.46987 5.60951 5.67798 5.88514 6.02777 6.31878 6.74249 7.31612 7.32553 8.89059 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.055086 B = 0.004994 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.170109 B = 5605.597233 C = 5740.705723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.037 3.963 3 H 0.043 0.957 4 C -0.510 4.510 5 H 0.034 0.966 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.267 1.267 10 H -0.303 1.303 11 H -0.241 1.241 12 C -0.040 4.040 13 C -0.110 4.110 14 C -0.100 4.100 15 C 0.104 3.896 16 N -0.117 5.117 17 N -0.320 5.320 18 C -0.014 4.014 19 C -0.015 4.015 20 N -0.324 5.324 21 C -0.105 4.105 22 C -0.098 4.098 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.245 0.755 30 H 0.243 0.757 31 H 0.141 0.859 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -1.543 -19.529 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.061 0.939 4 C -0.548 4.548 5 H 0.052 0.948 6 C -0.184 4.184 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.193 1.193 10 H -0.231 1.231 11 H -0.165 1.165 12 C -0.041 4.041 13 C -0.128 4.128 14 C -0.120 4.120 15 C 0.015 3.985 16 N -0.009 5.009 17 N -0.159 5.159 18 C -0.197 4.197 19 C -0.198 4.198 20 N -0.163 5.163 21 C -0.126 4.126 22 C -0.117 4.117 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.167 0.833 29 H 0.261 0.739 30 H 0.259 0.741 31 H 0.158 0.842 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.354 -0.928 -18.279 18.306 hybrid contribution 0.065 -0.244 0.043 0.256 sum 0.419 -1.172 -18.236 18.279 Atomic orbital electron populations 1.22107 0.96485 1.01575 0.99890 1.18309 0.93504 0.96018 0.90369 0.93851 1.21172 1.31080 1.12413 0.90117 0.94773 1.25858 0.97235 0.99968 0.95302 1.70045 1.47709 1.42582 0.98661 0.85830 0.79036 0.80029 0.77400 1.19299 1.23096 1.16481 1.20328 0.94633 0.94276 0.94817 1.21187 0.97520 1.01274 0.92822 1.20916 1.00714 0.91662 0.98752 1.17506 1.02343 0.92951 0.85746 1.44897 1.33959 1.05452 1.16565 1.74053 1.11628 1.29187 1.01003 1.25737 1.03588 0.89564 1.00828 1.25734 0.98264 1.03204 0.92640 1.74080 1.23824 0.99349 1.19030 1.20876 0.97580 1.00776 0.93350 1.20968 1.00240 0.94495 0.95953 0.94665 0.91792 0.92628 0.92556 0.83160 0.83313 0.73936 0.74095 0.84157 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.49 71.98 0.61 -5.01 16 2 C 0.04 1.61 2.07 -12.29 -0.03 1.58 16 3 H 0.04 1.86 6.93 -2.39 -0.02 1.84 16 4 C -0.51 -27.94 8.82 25.60 0.23 -27.71 16 5 H 0.03 2.10 7.84 -2.91 -0.02 2.08 16 6 C 0.01 0.76 5.45 84.66 0.46 1.22 16 7 N -0.95 -58.49 13.96 21.45 0.30 -58.20 16 8 Si 0.95 43.29 24.37 68.60 1.67 44.96 16 9 H -0.27 -11.59 6.87 99.48 0.68 -10.90 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.24 -9.94 6.53 99.48 0.65 -9.29 16 12 C -0.04 -1.55 4.74 -19.84 -0.09 -1.64 16 13 C -0.11 -3.67 9.66 22.25 0.21 -3.45 16 14 C -0.10 -3.17 9.59 22.38 0.21 -2.96 16 15 C 0.10 3.53 6.72 38.09 0.26 3.79 16 16 N -0.12 -3.71 4.13 -51.13 -0.21 -3.92 16 17 N -0.32 -8.96 11.21 -56.80 -0.64 -9.60 16 18 C -0.01 -0.27 12.20 85.12 1.04 0.77 16 19 C -0.02 -0.30 12.20 85.12 1.04 0.74 16 20 N -0.32 -9.39 11.21 -56.80 -0.64 -10.03 16 21 C -0.11 -3.63 9.59 22.39 0.21 -3.41 16 22 C -0.10 -3.68 8.70 22.25 0.19 -3.49 16 23 H 0.03 1.42 3.27 -2.39 -0.01 1.41 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 2.14 7.38 -2.39 -0.02 2.12 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.15 4.33 7.94 -2.91 -0.02 4.31 16 28 H 0.15 4.18 7.63 -2.91 -0.02 4.16 16 29 H 0.24 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.14 4.51 7.63 -2.91 -0.02 4.49 16 32 H 0.13 4.98 7.57 -2.91 -0.02 4.96 16 Total: -1.00 -69.61 272.36 5.88 -63.72 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.05 Total: 12.64 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.35 Total: -39.57 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.19 Total: -81.75 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.96 kcal Total: -69.61 5.88 -63.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.714 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds