Wall clock time and date at job start Mon Mar 30 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.50695 * 109.47149 * 239.99290 * 2 1 3 5 5 H 1.08010 * 120.00022 * 240.00066 * 4 2 1 6 6 C 1.37873 * 120.00093 * 60.00344 * 4 2 1 7 7 N 1.31512 * 120.00038 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00391 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46862 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47353 * 119.99601 * 8 6 4 11 11 H 1.48495 * 109.47362 * 240.00279 * 8 6 4 12 12 C 1.50702 * 109.46940 * 119.99383 * 2 1 3 13 13 C 1.38281 * 119.93630 * 240.00159 * 12 2 1 14 14 C 1.38116 * 120.06843 * 179.97438 * 13 12 2 15 15 C 1.38838 * 119.93384 * 0.02836 * 14 13 12 16 16 N 1.40210 * 120.06721 * 179.97438 * 15 14 13 17 17 N 1.28598 * 124.60572 * 0.03848 * 16 15 14 18 18 C 1.31424 * 108.72053 * 179.97438 * 17 16 15 19 19 C 1.39745 * 105.88358 * 359.97438 * 18 17 16 20 20 N 1.28591 * 124.60889 * 179.97438 * 16 15 14 21 21 C 1.38838 * 119.86768 * 0.26562 * 15 14 13 22 22 C 1.38122 * 119.92825 * 359.45571 * 21 15 14 23 23 H 1.09004 * 109.47557 * 300.00712 * 1 2 3 24 24 H 1.09006 * 109.47087 * 60.00709 * 1 2 3 25 25 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00652 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96294 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.03410 * 180.02562 * 14 13 12 29 29 H 1.07997 * 127.05793 * 180.26038 * 18 17 16 30 30 H 1.08007 * 127.05339 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.03749 * 179.71061 * 21 15 14 32 32 H 1.08000 * 119.96308 * 180.27161 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6035 8 14 2.3225 -1.1199 -4.0078 9 1 3.1474 -2.2867 -3.6035 10 1 1.1679 -1.5871 -4.8163 11 1 3.1473 -0.1863 -4.8159 12 6 2.0323 -0.7103 1.2306 13 6 2.8271 -0.0369 2.1399 14 6 3.2885 -0.6851 3.2689 15 6 2.9540 -2.0143 3.4900 16 7 3.4213 -2.6751 4.6349 17 7 4.1631 -2.1371 5.5372 18 6 4.4146 -3.0326 6.4656 19 6 3.7558 -4.1971 6.0622 20 7 3.1655 -3.9012 4.9260 21 6 2.1608 -2.6895 2.5722 22 6 1.6977 -2.0343 1.4480 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 0.7082 1.1605 -3.4844 27 1 3.0867 0.9971 1.9675 28 1 3.9090 -0.1585 3.9789 29 1 5.0049 -2.8951 7.3595 30 1 3.7365 -5.1458 6.5781 31 1 1.9028 -3.7249 2.7391 32 1 1.0770 -2.5578 0.7358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:09 Heat of formation + Delta-G solvation = 133.837445 kcal Electronic energy + Delta-G solvation = -16399.217541 eV Core-core repulsion = 13748.538346 eV Total energy + Delta-G solvation = -2650.679195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.67811 -38.99236 -35.00927 -33.01239 -32.59251 -30.91076 -30.51502 -27.92325 -25.21599 -23.92736 -23.46969 -21.60468 -21.22518 -19.72462 -18.16538 -16.60006 -16.34475 -15.38632 -15.16771 -14.98878 -14.32250 -14.11343 -13.44828 -13.11011 -12.80726 -12.38774 -11.94594 -11.61773 -11.42401 -11.03814 -10.97332 -10.93470 -10.59384 -10.41550 -10.37885 -10.15908 -9.88371 -9.58483 -9.04146 -8.58392 -8.45586 -7.72713 -6.09001 -4.16590 1.10984 1.78446 2.42593 2.43813 2.45733 3.24918 3.33629 3.37874 4.18436 4.21524 4.39857 4.89794 5.21503 5.24405 5.28967 5.29751 5.70943 5.78588 5.91650 5.93911 6.07629 6.18396 6.39893 6.63166 6.74216 6.76029 6.95843 6.99754 7.08741 7.18640 7.44541 7.63179 7.84032 8.00171 8.28054 8.37128 8.86133 9.48955 10.96575 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.044101 B = 0.004994 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.760307 B = 5605.696271 C = 5825.515665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.039 0.961 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.014 4.014 13 C -0.118 4.118 14 C -0.099 4.099 15 C 0.094 3.906 16 N -0.084 5.084 17 N -0.290 5.290 18 C -0.033 4.033 19 C -0.033 4.033 20 N -0.289 5.289 21 C -0.101 4.101 22 C -0.098 4.098 23 H 0.010 0.990 24 H 0.087 0.913 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.198 0.802 30 H 0.198 0.802 31 H 0.132 0.868 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -5.777 13.367 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 H 0.057 0.943 4 C -0.549 4.549 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.015 4.015 13 C -0.137 4.137 14 C -0.120 4.120 15 C 0.005 3.995 16 N 0.022 4.978 17 N -0.130 5.130 18 C -0.215 4.215 19 C -0.215 4.215 20 N -0.129 5.129 21 C -0.122 4.122 22 C -0.116 4.116 23 H 0.029 0.971 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.215 0.785 30 H 0.215 0.785 31 H 0.149 0.851 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.027 -5.053 12.171 13.522 hybrid contribution 0.769 -1.015 0.102 1.278 sum 3.796 -6.068 12.273 14.208 Atomic orbital electron populations 1.21804 0.97252 0.99504 1.00533 1.17986 0.93131 0.95672 0.88306 0.94295 1.21120 1.31478 1.12552 0.89701 0.92267 1.24946 0.94920 0.94945 0.98992 1.69883 1.36471 1.22812 1.23491 0.86512 0.78704 0.79759 0.82945 1.19708 1.20940 1.20957 1.20960 0.91419 0.93700 0.95437 1.21069 0.98832 1.00471 0.93288 1.20796 1.00666 0.91780 0.98782 1.17340 1.04046 0.92650 0.85483 1.44979 1.31842 1.04934 1.16013 1.74079 1.11090 1.27645 1.00190 1.24840 1.05132 0.90626 1.00878 1.24844 1.00713 1.01648 0.94270 1.74085 1.22318 0.99451 1.17052 1.20878 0.97375 1.00299 0.93657 1.21029 1.00007 0.94800 0.95794 0.97093 0.89406 0.95103 0.92878 0.85115 0.85084 0.78490 0.78484 0.85053 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.78 37.16 0.33 -2.71 16 2 C 0.07 1.59 2.48 -92.93 -0.23 1.36 16 3 H 0.04 0.98 7.87 -51.93 -0.41 0.57 16 4 C -0.51 -13.27 8.24 -34.44 -0.28 -13.56 16 5 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.67 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.01 -0.29 4.74 -104.59 -0.50 -0.79 16 13 C -0.12 -2.15 9.66 -39.61 -0.38 -2.53 16 14 C -0.10 -1.71 9.59 -39.40 -0.38 -2.08 16 15 C 0.09 1.67 6.72 -83.58 -0.56 1.10 16 16 N -0.08 -1.43 4.13 32.49 0.13 -1.29 16 17 N -0.29 -4.53 11.21 30.70 0.34 -4.18 16 18 C -0.03 -0.39 12.20 -17.16 -0.21 -0.60 16 19 C -0.03 -0.39 12.20 -17.17 -0.21 -0.60 16 20 N -0.29 -4.55 11.21 30.70 0.34 -4.20 16 21 C -0.10 -1.78 9.59 -39.40 -0.38 -2.16 16 22 C -0.10 -1.85 8.70 -39.61 -0.34 -2.20 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 25 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.13 2.18 7.94 -52.49 -0.42 1.76 16 28 H 0.13 2.04 7.63 -52.49 -0.40 1.64 16 29 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.20 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.13 2.12 7.63 -52.49 -0.40 1.72 16 32 H 0.14 2.55 7.57 -52.49 -0.40 2.15 16 LS Contribution 279.18 15.07 4.21 4.21 Total: -1.00 -29.24 279.18 -6.13 -35.37 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.52 Total: 1.32 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.24 Total: -23.17 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 1.45 Total: -33.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.24 -6.13 -35.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.210 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds