Wall clock time and date at job start Mon Mar 30 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.50695 * 109.47149 * 239.99290 * 2 1 3 5 5 H 1.08010 * 120.00022 * 240.00066 * 4 2 1 6 6 C 1.37873 * 120.00093 * 60.00344 * 4 2 1 7 7 N 1.31512 * 120.00038 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00391 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46862 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47353 * 119.99601 * 8 6 4 11 11 H 1.48495 * 109.47362 * 240.00279 * 8 6 4 12 12 C 1.50702 * 109.46940 * 119.99383 * 2 1 3 13 13 C 1.38281 * 119.93630 * 240.00159 * 12 2 1 14 14 C 1.38116 * 120.06843 * 179.97438 * 13 12 2 15 15 C 1.38838 * 119.93384 * 0.02836 * 14 13 12 16 16 N 1.40210 * 120.06721 * 179.97438 * 15 14 13 17 17 N 1.28598 * 124.60572 * 0.03848 * 16 15 14 18 18 C 1.31424 * 108.72053 * 179.97438 * 17 16 15 19 19 C 1.39745 * 105.88358 * 359.97438 * 18 17 16 20 20 N 1.28591 * 124.60889 * 179.97438 * 16 15 14 21 21 C 1.38838 * 119.86768 * 0.26562 * 15 14 13 22 22 C 1.38122 * 119.92825 * 359.45571 * 21 15 14 23 23 H 1.09004 * 109.47557 * 300.00712 * 1 2 3 24 24 H 1.09006 * 109.47087 * 60.00709 * 1 2 3 25 25 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00652 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96294 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.03410 * 180.02562 * 14 13 12 29 29 H 1.07997 * 127.05793 * 180.26038 * 18 17 16 30 30 H 1.08007 * 127.05339 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.03749 * 179.71061 * 21 15 14 32 32 H 1.08000 * 119.96308 * 180.27161 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6035 8 14 2.3225 -1.1199 -4.0078 9 1 3.1474 -2.2867 -3.6035 10 1 1.1679 -1.5871 -4.8163 11 1 3.1473 -0.1863 -4.8159 12 6 2.0323 -0.7103 1.2306 13 6 2.8271 -0.0369 2.1399 14 6 3.2885 -0.6851 3.2689 15 6 2.9540 -2.0143 3.4900 16 7 3.4213 -2.6751 4.6349 17 7 4.1631 -2.1371 5.5372 18 6 4.4146 -3.0326 6.4656 19 6 3.7558 -4.1971 6.0622 20 7 3.1655 -3.9012 4.9260 21 6 2.1608 -2.6895 2.5722 22 6 1.6977 -2.0343 1.4480 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 0.7082 1.1605 -3.4844 27 1 3.0867 0.9971 1.9675 28 1 3.9090 -0.1585 3.9789 29 1 5.0049 -2.8951 7.3595 30 1 3.7365 -5.1458 6.5781 31 1 1.9028 -3.7249 2.7391 32 1 1.0770 -2.5578 0.7358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:09 Heat of formation + Delta-G solvation = 117.653532 kcal Electronic energy + Delta-G solvation = -16399.919329 eV Core-core repulsion = 13748.538346 eV Total energy + Delta-G solvation = -2651.380982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.73384 -40.42318 -36.65061 -34.53444 -33.68123 -32.58129 -31.89775 -29.37445 -27.20187 -25.28698 -24.63451 -22.93314 -22.57227 -21.29360 -19.37314 -18.29989 -17.70510 -17.01240 -16.40174 -16.09875 -15.90504 -15.39931 -14.89484 -14.65402 -14.37708 -13.91396 -13.61428 -13.28297 -12.84387 -12.76731 -12.58630 -12.38403 -12.21761 -12.03029 -11.71668 -11.48410 -11.36565 -11.25069 -10.84313 -10.46899 -9.98287 -9.11225 -8.09732 -6.23436 -0.16709 0.37607 1.22343 1.27431 1.41197 1.44644 1.54815 1.55865 2.43205 2.82042 3.18819 3.23551 3.91128 3.92338 4.04556 4.19539 4.42303 4.48120 4.50552 4.75782 4.85035 4.97685 5.04948 5.11852 5.16225 5.23784 5.40505 5.41294 5.51007 5.65670 5.69080 6.00314 6.02429 6.11423 6.34203 6.84961 7.32852 7.44745 8.94741 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.044101 B = 0.004994 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.760307 B = 5605.696271 C = 5825.515665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.069 3.931 3 H 0.014 0.986 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.282 1.282 12 C -0.042 4.042 13 C -0.116 4.116 14 C -0.099 4.099 15 C 0.101 3.899 16 N -0.116 5.116 17 N -0.322 5.322 18 C -0.015 4.015 19 C -0.016 4.016 20 N -0.323 5.323 21 C -0.102 4.102 22 C -0.099 4.099 23 H 0.026 0.974 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.244 0.756 30 H 0.243 0.757 31 H 0.143 0.857 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -7.351 15.464 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 H 0.032 0.968 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.208 1.208 12 C -0.043 4.043 13 C -0.134 4.134 14 C -0.119 4.119 15 C 0.011 3.989 16 N -0.008 5.008 17 N -0.160 5.160 18 C -0.198 4.198 19 C -0.199 4.199 20 N -0.162 5.162 21 C -0.123 4.123 22 C -0.118 4.118 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.260 0.740 30 H 0.260 0.740 31 H 0.161 0.839 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.176 -6.618 14.251 16.258 hybrid contribution 0.502 -0.635 -0.287 0.859 sum 4.678 -7.252 13.964 16.416 Atomic orbital electron populations 1.21652 0.97035 0.99543 0.99943 1.17817 0.93406 0.94420 0.89309 0.96750 1.21389 1.31167 1.12376 0.90985 0.92936 1.25647 0.95217 0.95636 1.01608 1.69998 1.37447 1.23952 1.24005 0.85601 0.78194 0.78700 0.79748 1.19470 1.20502 1.20760 1.20681 0.93815 0.94470 0.95295 1.21140 0.98154 1.00921 0.93197 1.20875 1.00672 0.91832 0.98531 1.17464 1.02800 0.92808 0.85809 1.44883 1.33905 1.05459 1.16513 1.74061 1.11730 1.29198 1.01046 1.25732 1.03648 0.89599 1.00821 1.25731 0.98256 1.03195 0.92670 1.74068 1.23747 0.99325 1.19036 1.20895 0.97431 1.00747 0.93209 1.20962 1.00156 0.94328 0.96337 0.95464 0.92031 0.94657 0.92872 0.84187 0.83570 0.73986 0.74046 0.83902 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.78 71.98 0.63 -5.17 16 2 C 0.07 3.35 2.48 -12.29 -0.03 3.32 16 3 H 0.01 0.75 7.87 -2.39 -0.02 0.73 16 4 C -0.52 -27.71 8.24 25.60 0.21 -27.50 16 5 H 0.05 2.80 7.60 -2.91 -0.02 2.77 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 8 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C -0.04 -1.74 4.74 -19.84 -0.09 -1.83 16 13 C -0.12 -4.22 9.66 22.25 0.21 -4.01 16 14 C -0.10 -3.32 9.59 22.38 0.21 -3.10 16 15 C 0.10 3.50 6.72 38.09 0.26 3.76 16 16 N -0.12 -3.73 4.13 -51.13 -0.21 -3.94 16 17 N -0.32 -9.22 11.21 -56.80 -0.64 -9.86 16 18 C -0.02 -0.29 12.20 85.12 1.04 0.75 16 19 C -0.02 -0.30 12.20 85.12 1.04 0.74 16 20 N -0.32 -9.39 11.21 -56.80 -0.64 -10.03 16 21 C -0.10 -3.56 9.59 22.39 0.21 -3.34 16 22 C -0.10 -3.80 8.70 22.25 0.19 -3.61 16 23 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 25 H 0.03 1.56 7.38 -2.39 -0.02 1.54 16 26 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.14 4.71 7.94 -2.91 -0.02 4.69 16 28 H 0.15 4.40 7.63 -2.91 -0.02 4.38 16 29 H 0.24 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.14 4.54 7.63 -2.91 -0.02 4.52 16 32 H 0.13 5.06 7.57 -2.91 -0.02 5.04 16 Total: -1.00 -64.07 279.18 6.24 -57.82 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.12 Total: 10.72 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 4.34 Total: -38.59 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.24 Total: -74.76 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.07 6.24 -57.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.476 kcal (2) G-P(sol) polarization free energy of solvation -64.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds