Wall clock time and date at job start Mon Mar 30 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47315 * 2 1 4 4 C 1.50704 * 109.46845 * 119.99431 * 2 1 3 5 5 H 1.08001 * 119.99767 * 85.88835 * 4 2 1 6 6 C 1.37870 * 120.00234 * 265.88802 * 4 2 1 7 7 N 1.31512 * 120.00064 * 182.18017 * 6 4 2 8 8 Si 1.86800 * 119.99910 * 2.17856 * 6 4 2 9 9 H 1.48497 * 109.47517 * 268.35852 * 8 6 4 10 10 H 1.48503 * 109.47267 * 28.36278 * 8 6 4 11 11 H 1.48505 * 109.47184 * 148.36044 * 8 6 4 12 12 C 1.50698 * 109.47302 * 239.99382 * 2 1 3 13 13 C 1.38146 * 120.03102 * 293.84261 * 12 2 1 14 14 C 1.38262 * 120.06294 * 179.78717 * 13 12 2 15 15 C 1.38298 * 120.12782 * 0.46448 * 14 13 12 16 16 C 1.38096 * 120.06922 * 359.78835 * 15 14 13 17 17 C 1.38796 * 120.03136 * 114.11207 * 12 2 1 18 18 N 1.40252 * 120.06727 * 359.96227 * 17 12 2 19 19 C 1.36108 * 125.94354 * 131.80091 * 18 17 12 20 20 C 1.35368 * 106.05195 * 180.02562 * 19 18 17 21 21 N 1.33777 * 106.53765 * 359.97438 * 20 19 18 22 22 N 1.28615 * 109.05542 * 359.73323 * 21 20 19 23 23 H 1.09001 * 109.46916 * 64.13695 * 1 2 3 24 24 H 1.08994 * 109.47497 * 184.14100 * 1 2 3 25 25 H 1.09001 * 109.46943 * 304.14640 * 1 2 3 26 26 H 0.96999 * 119.99829 * 179.97438 * 7 6 4 27 27 H 1.08001 * 119.96993 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.93552 * 180.22742 * 14 13 12 29 29 H 1.08005 * 119.96887 * 179.76367 * 15 14 13 30 30 H 1.08003 * 120.03880 * 179.97438 * 16 15 14 31 31 H 1.08006 * 126.97562 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.73097 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.1490 -1.7840 1.2245 6 6 2.3428 0.0104 2.3642 7 7 2.8216 -0.6043 3.4236 8 14 2.0834 1.8601 2.3952 9 1 3.3298 2.5421 1.9634 10 1 0.9769 2.2203 1.4725 11 1 1.7371 2.2883 3.7743 12 6 2.0324 -0.7105 -1.2304 13 6 1.8071 -2.0644 -1.3873 14 6 2.2639 -2.7161 -2.5179 15 6 2.9557 -2.0170 -3.4902 16 6 3.1885 -0.6646 -3.3364 17 6 2.7268 -0.0064 -2.2043 18 7 2.9613 1.3672 -2.0454 19 6 4.1552 1.9986 -2.2140 20 6 3.9250 3.3084 -1.9610 21 7 2.6268 3.4148 -1.6560 22 7 2.0835 2.2509 -1.7206 23 1 -0.3633 0.4483 -0.9247 24 1 -0.3634 -1.0249 0.0742 25 1 -0.3633 0.5768 0.8505 26 1 3.0404 -0.0971 4.2210 27 1 1.2710 -2.6138 -0.6276 28 1 2.0834 -3.7738 -2.6403 29 1 3.3147 -2.5295 -4.3706 30 1 3.7292 -0.1192 -4.0958 31 1 5.0955 1.5464 -2.4931 32 1 4.6477 4.1101 -1.9980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:43 Heat of formation + Delta-G solvation = 130.309898 kcal Electronic energy + Delta-G solvation = -17381.821067 eV Core-core repulsion = 14730.988906 eV Total energy + Delta-G solvation = -2650.832161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.04131 -39.17936 -34.62722 -34.15624 -31.86092 -30.72486 -29.77122 -28.81194 -25.20996 -23.79905 -23.35804 -21.92650 -21.02628 -19.71209 -18.04352 -17.02927 -16.08811 -15.70347 -14.87582 -14.60410 -14.37078 -14.04302 -13.51687 -13.33090 -12.73165 -12.53608 -12.18321 -11.80580 -11.39766 -11.34079 -11.15245 -10.85816 -10.73799 -10.56275 -10.31776 -9.81926 -9.72708 -9.28403 -8.92168 -8.63182 -8.55801 -8.17641 -6.16378 -4.17110 1.15375 1.66846 2.13234 2.71349 2.88626 3.29076 3.38318 3.50588 3.95748 4.39189 4.74647 4.99849 5.05650 5.18858 5.22202 5.34607 5.46381 5.58841 5.64029 5.90641 5.96867 6.14751 6.33608 6.44870 6.48233 6.60384 6.68816 6.77794 6.80813 6.96780 7.20671 7.25486 7.43501 7.64755 8.38588 8.82597 8.85323 9.46064 10.95470 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.012661 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.693887 B = 2211.049067 C = 3243.481080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.029 3.971 3 H 0.056 0.944 4 C -0.513 4.513 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.895 5.895 8 Si 0.862 3.138 9 H -0.279 1.279 10 H -0.252 1.252 11 H -0.286 1.286 12 C 0.004 3.996 13 C -0.096 4.096 14 C -0.105 4.105 15 C -0.133 4.133 16 C -0.106 4.106 17 C 0.084 3.916 18 N -0.229 5.229 19 C -0.049 4.049 20 C -0.055 4.055 21 N -0.281 5.281 22 N -0.061 5.061 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.188 0.812 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -0.388 -13.609 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.074 0.926 4 C -0.550 4.550 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.532 5.532 8 Si 0.689 3.311 9 H -0.205 1.205 10 H -0.176 1.176 11 H -0.212 1.212 12 C 0.002 3.998 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.152 4.152 16 C -0.126 4.126 17 C -0.005 4.005 18 N -0.017 5.017 19 C -0.198 4.198 20 C -0.212 4.212 21 N -0.147 5.147 22 N -0.040 5.040 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.205 0.795 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.044 -0.048 -13.030 13.072 hybrid contribution 1.340 0.710 -0.025 1.517 sum 2.384 0.662 -13.055 13.287 Atomic orbital electron populations 1.21930 0.97160 1.00322 0.99288 1.18521 0.93382 0.96746 0.90414 0.92649 1.20925 1.44384 0.95473 0.94224 0.90353 1.24960 0.93916 0.98142 0.95482 1.69882 1.43219 1.36229 1.03864 0.87056 0.80140 0.86192 0.77725 1.20461 1.17563 1.21196 1.20463 0.91778 0.94002 0.93520 1.21074 0.99800 0.93313 0.97306 1.21323 0.97083 0.99956 0.93928 1.20791 1.01285 0.93112 0.99999 1.20823 1.01069 0.95382 0.95355 1.17542 1.07081 0.78247 0.97670 1.44616 1.06799 1.07248 1.43052 1.23823 0.92280 0.93858 1.09851 1.23527 0.95057 0.96117 1.06449 1.75086 1.07713 1.14507 1.17384 1.78480 1.16935 0.92269 1.16319 0.95272 0.93496 0.93236 0.92503 0.84443 0.85698 0.85560 0.85828 0.79469 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.84 37.16 0.33 -2.52 16 2 C 0.03 0.68 1.69 -92.92 -0.16 0.53 16 3 H 0.06 1.41 2.92 -51.93 -0.15 1.26 16 4 C -0.51 -14.13 8.56 -34.44 -0.29 -14.42 16 5 H 0.08 2.27 7.23 -52.49 -0.38 1.89 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -27.26 13.96 55.43 0.77 -26.48 16 8 Si 0.86 22.75 26.58 -169.99 -4.52 18.23 16 9 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 10 H -0.25 -6.58 6.12 56.52 0.35 -6.23 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 C 0.00 0.09 4.79 -104.45 -0.50 -0.41 16 13 C -0.10 -1.71 8.68 -39.61 -0.34 -2.05 16 14 C -0.10 -1.46 10.04 -39.55 -0.40 -1.85 16 15 C -0.13 -1.70 10.04 -39.61 -0.40 -2.10 16 16 C -0.11 -1.53 9.65 -39.41 -0.38 -1.91 16 17 C 0.08 1.56 6.17 -83.57 -0.52 1.04 16 18 N -0.23 -4.42 2.98 -10.47 -0.03 -4.45 16 19 C -0.05 -0.78 11.30 -16.68 -0.19 -0.97 16 20 C -0.06 -0.89 12.05 -17.73 -0.21 -1.11 16 21 N -0.28 -5.75 12.40 30.24 0.37 -5.37 16 22 N -0.06 -1.33 10.82 60.35 0.65 -0.67 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.95 7.94 -51.93 -0.41 0.54 16 25 H 0.05 1.13 7.12 -51.93 -0.37 0.76 16 26 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.14 2.44 7.49 -52.49 -0.39 2.05 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.45 8.04 -52.48 -0.42 1.02 16 31 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.19 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -33.18 273.78 -5.21 -38.39 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.43 Total: -0.16 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.16 Total: -23.61 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 1.77 Total: -36.98 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.52 Total: 18.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.18 -5.21 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.703 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds