Wall clock time and date at job start Mon Mar 30 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47315 * 2 1 4 4 C 1.50704 * 109.46845 * 119.99431 * 2 1 3 5 5 H 1.08001 * 119.99767 * 85.88835 * 4 2 1 6 6 C 1.37870 * 120.00234 * 265.88802 * 4 2 1 7 7 N 1.31512 * 120.00064 * 182.18017 * 6 4 2 8 8 Si 1.86800 * 119.99910 * 2.17856 * 6 4 2 9 9 H 1.48497 * 109.47517 * 268.35852 * 8 6 4 10 10 H 1.48503 * 109.47267 * 28.36278 * 8 6 4 11 11 H 1.48505 * 109.47184 * 148.36044 * 8 6 4 12 12 C 1.50698 * 109.47302 * 239.99382 * 2 1 3 13 13 C 1.38146 * 120.03102 * 293.84261 * 12 2 1 14 14 C 1.38262 * 120.06294 * 179.78717 * 13 12 2 15 15 C 1.38298 * 120.12782 * 0.46448 * 14 13 12 16 16 C 1.38096 * 120.06922 * 359.78835 * 15 14 13 17 17 C 1.38796 * 120.03136 * 114.11207 * 12 2 1 18 18 N 1.40252 * 120.06727 * 359.96227 * 17 12 2 19 19 C 1.36108 * 125.94354 * 131.80091 * 18 17 12 20 20 C 1.35368 * 106.05195 * 180.02562 * 19 18 17 21 21 N 1.33777 * 106.53765 * 359.97438 * 20 19 18 22 22 N 1.28615 * 109.05542 * 359.73323 * 21 20 19 23 23 H 1.09001 * 109.46916 * 64.13695 * 1 2 3 24 24 H 1.08994 * 109.47497 * 184.14100 * 1 2 3 25 25 H 1.09001 * 109.46943 * 304.14640 * 1 2 3 26 26 H 0.96999 * 119.99829 * 179.97438 * 7 6 4 27 27 H 1.08001 * 119.96993 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.93552 * 180.22742 * 14 13 12 29 29 H 1.08005 * 119.96887 * 179.76367 * 15 14 13 30 30 H 1.08003 * 120.03880 * 179.97438 * 16 15 14 31 31 H 1.08006 * 126.97562 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.73097 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.1490 -1.7840 1.2245 6 6 2.3428 0.0104 2.3642 7 7 2.8216 -0.6043 3.4236 8 14 2.0834 1.8601 2.3952 9 1 3.3298 2.5421 1.9634 10 1 0.9769 2.2203 1.4725 11 1 1.7371 2.2883 3.7743 12 6 2.0324 -0.7105 -1.2304 13 6 1.8071 -2.0644 -1.3873 14 6 2.2639 -2.7161 -2.5179 15 6 2.9557 -2.0170 -3.4902 16 6 3.1885 -0.6646 -3.3364 17 6 2.7268 -0.0064 -2.2043 18 7 2.9613 1.3672 -2.0454 19 6 4.1552 1.9986 -2.2140 20 6 3.9250 3.3084 -1.9610 21 7 2.6268 3.4148 -1.6560 22 7 2.0835 2.2509 -1.7206 23 1 -0.3633 0.4483 -0.9247 24 1 -0.3634 -1.0249 0.0742 25 1 -0.3633 0.5768 0.8505 26 1 3.0404 -0.0971 4.2210 27 1 1.2710 -2.6138 -0.6276 28 1 2.0834 -3.7738 -2.6403 29 1 3.3147 -2.5295 -4.3706 30 1 3.7292 -0.1192 -4.0958 31 1 5.0955 1.5464 -2.4931 32 1 4.6477 4.1101 -1.9980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:43 Heat of formation + Delta-G solvation = 108.839599 kcal Electronic energy + Delta-G solvation = -17382.752089 eV Core-core repulsion = 14730.988906 eV Total energy + Delta-G solvation = -2651.763183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.36840 -40.46186 -36.35626 -35.48402 -33.87625 -32.03251 -31.02707 -30.24337 -27.27276 -25.14705 -24.70170 -23.29482 -22.38126 -21.28295 -19.35062 -18.99649 -17.54981 -17.10178 -16.29823 -16.04838 -15.80058 -15.35539 -15.01050 -14.74475 -14.53759 -14.15964 -13.99554 -13.20487 -13.15367 -12.75420 -12.69329 -12.62490 -12.33085 -12.08764 -11.91946 -11.76240 -11.34371 -11.12475 -10.86006 -10.32768 -9.78353 -9.51857 -8.41029 -6.40933 -0.08389 0.45274 0.86646 1.15090 1.21481 1.36885 1.47093 1.58557 2.20567 2.73070 2.98455 3.60313 3.82121 3.91554 4.13985 4.21376 4.23710 4.39016 4.44355 4.55008 4.64661 4.76338 4.81721 4.88557 5.12406 5.18017 5.23654 5.33304 5.42786 5.52774 5.60583 5.65906 5.78011 6.08983 6.22612 6.64890 7.23672 7.47756 8.74842 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.012661 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.693887 B = 2211.049067 C = 3243.481080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.026 3.974 3 H 0.043 0.957 4 C -0.499 4.499 5 H 0.054 0.946 6 C 0.029 3.971 7 N -0.938 5.938 8 Si 0.913 3.087 9 H -0.285 1.285 10 H -0.255 1.255 11 H -0.280 1.280 12 C -0.038 4.038 13 C -0.116 4.116 14 C -0.093 4.093 15 C -0.112 4.112 16 C -0.096 4.096 17 C 0.064 3.936 18 N -0.237 5.237 19 C -0.042 4.042 20 C -0.059 4.059 21 N -0.316 5.316 22 N -0.113 5.113 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.266 0.734 27 H 0.122 0.878 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.158 0.842 31 H 0.233 0.767 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -1.010 -16.770 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.007 3.993 3 H 0.061 0.939 4 C -0.537 4.537 5 H 0.072 0.928 6 C -0.169 4.169 7 N -0.578 5.578 8 Si 0.739 3.261 9 H -0.211 1.211 10 H -0.179 1.179 11 H -0.206 1.206 12 C -0.039 4.039 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.130 4.130 16 C -0.116 4.116 17 C -0.026 4.026 18 N -0.025 5.025 19 C -0.191 4.191 20 C -0.215 4.215 21 N -0.181 5.181 22 N -0.091 5.091 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.140 0.860 28 H 0.179 0.821 29 H 0.194 0.806 30 H 0.175 0.825 31 H 0.249 0.751 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.451 -0.664 -16.199 16.397 hybrid contribution 0.954 0.792 0.795 1.473 sum 3.405 0.127 -15.404 15.777 Atomic orbital electron populations 1.21805 0.96412 1.00710 0.99103 1.18380 0.94052 0.96032 0.90830 0.93942 1.21225 1.42245 0.94620 0.95623 0.92763 1.25541 0.94662 1.01088 0.95592 1.69975 1.45814 1.37403 1.04614 0.86258 0.79474 0.82745 0.77583 1.21116 1.17864 1.20602 1.20199 0.94925 0.95226 0.93599 1.21084 1.00985 0.92521 0.98895 1.21714 0.95464 1.01650 0.92274 1.21390 0.98695 0.92367 1.00578 1.21263 0.99958 0.96175 0.94234 1.17872 1.07794 0.78094 0.98804 1.44843 1.07559 1.07428 1.42695 1.24639 0.92686 0.93721 1.08043 1.24305 0.94262 0.97719 1.05258 1.75013 1.09982 1.14748 1.18400 1.78431 1.18526 0.93064 1.19032 0.94070 0.92531 0.94909 0.92472 0.86019 0.82110 0.80640 0.82461 0.75107 0.75494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.84 71.98 0.64 -4.91 16 2 C 0.03 1.28 1.69 -12.28 -0.02 1.26 16 3 H 0.04 2.20 2.92 -2.39 -0.01 2.19 16 4 C -0.50 -28.41 8.56 25.60 0.22 -28.19 16 5 H 0.05 3.28 7.23 -2.91 -0.02 3.25 16 6 C 0.03 1.75 5.47 84.65 0.46 2.21 16 7 N -0.94 -58.94 13.96 21.44 0.30 -58.64 16 8 Si 0.91 48.64 26.58 68.60 1.82 50.46 16 9 H -0.28 -15.27 7.11 99.48 0.71 -14.56 16 10 H -0.25 -13.52 6.12 99.48 0.61 -12.92 16 11 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 12 C -0.04 -1.53 4.79 -19.75 -0.09 -1.62 16 13 C -0.12 -4.01 8.68 22.25 0.19 -3.81 16 14 C -0.09 -2.23 10.04 22.29 0.22 -2.00 16 15 C -0.11 -2.23 10.04 22.25 0.22 -2.01 16 16 C -0.10 -2.34 9.65 22.38 0.22 -2.13 16 17 C 0.06 2.24 6.17 38.07 0.24 2.47 16 18 N -0.24 -8.80 2.98 -187.04 -0.56 -9.36 16 19 C -0.04 -1.21 11.30 83.37 0.94 -0.26 16 20 C -0.06 -1.77 12.05 83.73 1.01 -0.76 16 21 N -0.32 -12.83 12.40 -58.24 -0.72 -13.55 16 22 N -0.11 -4.88 10.82 37.02 0.40 -4.48 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.36 7.94 -2.39 -0.02 2.35 16 25 H 0.03 1.53 7.12 -2.39 -0.02 1.51 16 26 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.12 4.42 7.49 -2.91 -0.02 4.40 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.16 2.74 8.04 -2.91 -0.02 2.72 16 31 H 0.23 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.23 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -76.70 273.78 6.52 -70.18 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.03 Total: 5.15 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 4.25 Total: -39.76 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -0.58 Total: -86.03 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.82 Total: 50.46 kcal Total: -76.70 6.52 -70.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.016 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds