Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.50699 * 109.46828 * 240.00077 * 2 1 3 5 5 H 1.07999 * 119.99952 * 239.99741 * 4 2 1 6 6 C 1.37877 * 120.00171 * 60.00499 * 4 2 1 7 7 N 1.31517 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47228 * 89.99719 * 8 6 4 10 10 H 1.48501 * 109.46877 * 209.99707 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99562 * 8 6 4 12 12 C 1.50696 * 109.47001 * 120.00319 * 2 1 3 13 13 C 1.38146 * 120.03432 * 79.01736 * 12 2 1 14 14 C 1.38260 * 120.06013 * 179.79137 * 13 12 2 15 15 C 1.38293 * 120.13492 * 0.46527 * 14 13 12 16 16 C 1.38107 * 120.06310 * 359.78834 * 15 14 13 17 17 C 1.38810 * 120.03155 * 259.29369 * 12 2 1 18 18 N 1.40248 * 120.06113 * 359.95514 * 17 12 2 19 19 C 1.36113 * 125.93673 * 201.97188 * 18 17 12 20 20 C 1.35369 * 106.04953 * 180.02562 * 19 18 17 21 21 N 1.33780 * 106.53957 * 0.02562 * 20 19 18 22 22 N 1.28611 * 109.05607 * 359.73060 * 21 20 19 23 23 H 1.08998 * 109.47245 * 299.99868 * 1 2 3 24 24 H 1.09000 * 109.46979 * 59.99639 * 1 2 3 25 25 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 26 26 H 0.96992 * 119.99913 * 180.02562 * 7 6 4 27 27 H 1.07998 * 119.96482 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.93001 * 180.23444 * 14 13 12 29 29 H 1.07997 * 119.96801 * 179.77238 * 15 14 13 30 30 H 1.08002 * 120.03052 * 179.97438 * 16 15 14 31 31 H 1.07995 * 126.97966 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.73891 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4873 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 6 2.0480 -2.0912 1.2736 14 6 2.5127 -2.7435 2.4006 15 6 2.9541 -2.0167 3.4911 16 6 2.9360 -0.6362 3.4557 17 6 2.4743 0.0218 2.3236 18 7 2.4551 1.4236 2.2845 19 6 3.2103 2.2547 3.0536 20 6 2.8723 3.5134 2.6878 21 7 1.9442 3.3958 1.7315 22 7 1.7232 2.1480 1.5120 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7083 1.1610 -3.4843 27 1 1.7004 -2.6614 0.4249 28 1 2.5276 -3.8230 2.4306 29 1 3.3132 -2.5290 4.3714 30 1 3.2804 -0.0690 4.3078 31 1 3.9327 1.9682 3.8035 32 1 3.2731 4.4325 3.0891 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = 136.832323 kcal Electronic energy + Delta-G solvation = -17241.061056 eV Core-core repulsion = 14590.511728 eV Total energy + Delta-G solvation = -2650.549328 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.93367 -39.06557 -34.53746 -34.07705 -31.62158 -30.52694 -29.59632 -28.29753 -25.12058 -23.69554 -23.40962 -21.55425 -20.91797 -19.81119 -17.88989 -16.36768 -16.00372 -15.50395 -14.86792 -14.65408 -14.44945 -13.91053 -13.40632 -13.05109 -12.74670 -12.61939 -11.70377 -11.36306 -11.13750 -10.99785 -10.82721 -10.80218 -10.54466 -10.46559 -10.32360 -10.04051 -9.51765 -9.12130 -8.69989 -8.44893 -8.23031 -7.96302 -5.96410 -4.04937 1.13150 1.75183 2.40797 2.80261 3.02677 3.29942 3.37246 3.39189 4.11439 4.43290 4.76673 4.97429 5.16721 5.25608 5.33577 5.40357 5.54162 5.64204 5.72599 6.00914 6.11067 6.35929 6.46802 6.61011 6.82742 6.87743 6.98235 7.10645 7.17875 7.27582 7.46186 7.75157 8.06581 8.16620 8.39428 8.95129 9.01786 9.58455 11.08537 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.009637 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.042321 B = 2904.864110 C = 3881.342577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.059 3.941 3 H 0.072 0.928 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.878 5.878 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.009 4.009 13 C -0.095 4.095 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.118 4.118 17 C 0.089 3.911 18 N -0.230 5.230 19 C -0.070 4.070 20 C -0.054 4.054 21 N -0.284 5.284 22 N -0.032 5.032 23 H 0.011 0.989 24 H 0.088 0.912 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -2.980 12.512 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.516 5.516 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.011 4.011 13 C -0.113 4.113 14 C -0.133 4.133 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.001 4.001 18 N -0.018 5.018 19 C -0.218 4.218 20 C -0.210 4.210 21 N -0.150 5.150 22 N -0.010 5.010 23 H 0.030 0.970 24 H 0.107 0.893 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.201 0.799 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.422 -2.757 11.268 12.095 hybrid contribution 1.355 -0.527 0.070 1.456 sum 4.777 -3.285 11.338 12.734 Atomic orbital electron populations 1.21602 0.96534 0.98506 1.00857 1.18334 0.93510 0.97133 0.87050 0.91043 1.21162 1.31877 1.12707 0.90183 0.92448 1.24946 0.95047 0.94924 0.98829 1.69918 1.35948 1.22306 1.23383 0.86633 0.79195 0.79443 0.82976 1.20624 1.21193 1.20011 1.20771 0.91786 0.93975 0.94572 1.21210 0.98500 0.93570 0.98024 1.21327 0.98449 0.99927 0.93605 1.20753 1.02600 0.92593 0.99085 1.20715 1.02100 0.95132 0.95947 1.17737 1.07814 0.77403 0.97192 1.44830 1.26084 1.06432 1.24418 1.23684 1.03890 0.90546 1.03638 1.23522 1.00252 0.97592 0.99604 1.75215 1.15259 1.09532 1.14965 1.78845 1.14325 0.96429 1.11395 0.96994 0.89341 0.95948 0.92879 0.84172 0.85945 0.85738 0.85897 0.79853 0.79667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.82 37.16 0.33 -2.63 16 2 C 0.06 1.49 1.77 -92.93 -0.16 1.33 16 3 H 0.07 2.03 5.14 -51.93 -0.27 1.76 16 4 C -0.52 -14.16 7.89 -34.44 -0.27 -14.43 16 5 H 0.06 1.51 6.73 -52.49 -0.35 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.56 11.32 55.43 0.63 -24.94 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.01 -0.19 4.83 -104.45 -0.50 -0.70 16 13 C -0.09 -1.75 8.81 -39.61 -0.35 -2.10 16 14 C -0.11 -1.66 10.04 -39.55 -0.40 -2.06 16 15 C -0.13 -1.74 10.04 -39.61 -0.40 -2.14 16 16 C -0.12 -1.74 9.49 -39.41 -0.37 -2.12 16 17 C 0.09 1.70 6.53 -83.57 -0.55 1.16 16 18 N -0.23 -4.54 3.46 -10.47 -0.04 -4.57 16 19 C -0.07 -1.07 10.85 -16.68 -0.18 -1.25 16 20 C -0.05 -0.86 12.05 -17.73 -0.21 -1.07 16 21 N -0.28 -6.03 12.40 30.24 0.37 -5.66 16 22 N -0.03 -0.73 9.31 60.35 0.56 -0.16 16 23 H 0.01 0.27 8.03 -51.93 -0.42 -0.15 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.14 2.64 7.15 -52.49 -0.38 2.26 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.41 7.20 -52.49 -0.38 1.04 16 31 H 0.18 1.93 7.57 -52.49 -0.40 1.54 16 32 H 0.19 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -31.93 272.27 -5.88 -37.81 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.33 Total: 1.46 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -3.17 Total: -24.30 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 1.53 Total: -35.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.93 -5.88 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.645 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds