Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.50699 * 109.46828 * 240.00077 * 2 1 3 5 5 H 1.07999 * 119.99952 * 239.99741 * 4 2 1 6 6 C 1.37877 * 120.00171 * 60.00499 * 4 2 1 7 7 N 1.31517 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47228 * 89.99719 * 8 6 4 10 10 H 1.48501 * 109.46877 * 209.99707 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99562 * 8 6 4 12 12 C 1.50696 * 109.47001 * 120.00319 * 2 1 3 13 13 C 1.38146 * 120.03432 * 79.01736 * 12 2 1 14 14 C 1.38260 * 120.06013 * 179.79137 * 13 12 2 15 15 C 1.38293 * 120.13492 * 0.46527 * 14 13 12 16 16 C 1.38107 * 120.06310 * 359.78834 * 15 14 13 17 17 C 1.38810 * 120.03155 * 259.29369 * 12 2 1 18 18 N 1.40248 * 120.06113 * 359.95514 * 17 12 2 19 19 C 1.36113 * 125.93673 * 201.97188 * 18 17 12 20 20 C 1.35369 * 106.04953 * 180.02562 * 19 18 17 21 21 N 1.33780 * 106.53957 * 0.02562 * 20 19 18 22 22 N 1.28611 * 109.05607 * 359.73060 * 21 20 19 23 23 H 1.08998 * 109.47245 * 299.99868 * 1 2 3 24 24 H 1.09000 * 109.46979 * 59.99639 * 1 2 3 25 25 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 26 26 H 0.96992 * 119.99913 * 180.02562 * 7 6 4 27 27 H 1.07998 * 119.96482 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.93001 * 180.23444 * 14 13 12 29 29 H 1.07997 * 119.96801 * 179.77238 * 15 14 13 30 30 H 1.08002 * 120.03052 * 179.97438 * 16 15 14 31 31 H 1.07995 * 126.97966 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.73891 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4873 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 6 2.0480 -2.0912 1.2736 14 6 2.5127 -2.7435 2.4006 15 6 2.9541 -2.0167 3.4911 16 6 2.9360 -0.6362 3.4557 17 6 2.4743 0.0218 2.3236 18 7 2.4551 1.4236 2.2845 19 6 3.2103 2.2547 3.0536 20 6 2.8723 3.5134 2.6878 21 7 1.9442 3.3958 1.7315 22 7 1.7232 2.1480 1.5120 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7083 1.1610 -3.4843 27 1 1.7004 -2.6614 0.4249 28 1 2.5276 -3.8230 2.4306 29 1 3.3132 -2.5290 4.3714 30 1 3.2804 -0.0690 4.3078 31 1 3.9327 1.9682 3.8035 32 1 3.2731 4.4325 3.0891 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = 116.564112 kcal Electronic energy + Delta-G solvation = -17241.939951 eV Core-core repulsion = 14590.511728 eV Total energy + Delta-G solvation = -2651.428223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.29641 -40.38198 -36.32800 -35.43843 -33.44243 -31.89069 -30.89533 -29.88371 -27.23079 -25.13348 -24.75219 -23.04851 -22.28107 -21.36951 -19.17032 -18.28900 -17.43422 -16.99843 -16.27454 -16.19200 -15.80835 -15.22898 -14.76982 -14.64986 -14.37888 -14.10625 -13.43528 -12.99956 -12.77075 -12.72662 -12.53865 -12.44174 -12.17753 -12.01761 -11.91744 -11.79507 -11.27042 -10.85542 -10.51180 -10.11741 -9.68340 -9.35546 -8.07193 -6.22333 -0.13925 0.50177 1.14487 1.38258 1.39089 1.49030 1.54552 1.68839 2.40999 2.85580 3.19864 3.61517 3.83239 4.00041 4.22585 4.25390 4.32558 4.44092 4.52825 4.71378 4.84727 4.92711 4.99414 5.19132 5.25699 5.33610 5.43261 5.54243 5.57060 5.65166 5.78534 5.97453 6.13324 6.22885 6.35099 6.89736 7.44333 7.61707 8.97306 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.009637 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.042321 B = 2904.864110 C = 3881.342577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.059 3.941 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.052 4.052 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.111 4.111 16 C -0.105 4.105 17 C 0.065 3.935 18 N -0.238 5.238 19 C -0.051 4.051 20 C -0.057 4.057 21 N -0.327 5.327 22 N -0.100 5.100 23 H 0.010 0.990 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.258 0.742 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.178 0.822 30 H 0.165 0.835 31 H 0.240 0.760 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -4.897 15.683 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.040 3.960 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.054 4.054 13 C -0.135 4.135 14 C -0.120 4.120 15 C -0.129 4.129 16 C -0.126 4.126 17 C -0.026 4.026 18 N -0.026 5.026 19 C -0.199 4.199 20 C -0.214 4.214 21 N -0.192 5.192 22 N -0.078 5.078 23 H 0.029 0.971 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.178 0.822 29 H 0.195 0.805 30 H 0.183 0.817 31 H 0.256 0.744 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.849 -4.694 14.428 16.261 hybrid contribution 0.678 0.055 -0.724 0.993 sum 6.526 -4.639 13.705 15.872 Atomic orbital electron populations 1.21380 0.97651 0.97911 0.98985 1.18045 0.92873 0.96001 0.89067 0.94254 1.21566 1.31263 1.12529 0.91323 0.92176 1.25805 0.95419 0.95680 1.02050 1.70102 1.37574 1.24047 1.23680 0.85600 0.79001 0.78299 0.79037 1.19646 1.21427 1.19093 1.20467 0.95343 0.95272 0.94324 1.21167 1.00224 0.92502 0.99560 1.21716 0.96204 1.01861 0.92176 1.21387 0.99705 0.91976 0.99834 1.21236 1.00029 0.96110 0.95180 1.18114 1.08994 0.77270 0.98174 1.45062 1.26144 1.06983 1.24369 1.24614 1.02894 0.89558 1.02857 1.24355 0.98930 0.99915 0.98211 1.75124 1.17453 1.09550 1.17045 1.78829 1.17399 0.97302 1.14227 0.97135 0.92691 0.95585 0.93241 0.85975 0.82250 0.80509 0.81708 0.74373 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.49 8.82 71.98 0.63 -4.86 16 2 C 0.06 3.19 1.77 -12.29 -0.02 3.17 16 3 H 0.04 2.41 5.14 -2.39 -0.01 2.40 16 4 C -0.53 -30.02 7.89 25.60 0.20 -29.82 16 5 H 0.06 3.27 6.73 -2.91 -0.02 3.25 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.91 -56.48 11.32 21.45 0.24 -56.24 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C -0.05 -2.27 4.83 -19.75 -0.10 -2.36 16 13 C -0.12 -4.23 8.81 22.25 0.20 -4.03 16 14 C -0.10 -2.54 10.04 22.29 0.22 -2.31 16 15 C -0.11 -2.26 10.04 22.25 0.22 -2.04 16 16 C -0.11 -2.59 9.49 22.38 0.21 -2.38 16 17 C 0.06 2.39 6.53 38.07 0.25 2.64 16 18 N -0.24 -9.27 3.46 -187.05 -0.65 -9.92 16 19 C -0.05 -1.43 10.85 83.37 0.90 -0.52 16 20 C -0.06 -1.75 12.05 83.73 1.01 -0.74 16 21 N -0.33 -14.35 12.40 -58.24 -0.72 -15.07 16 22 N -0.10 -4.83 9.31 37.02 0.34 -4.49 16 23 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 24 H 0.05 3.30 6.07 -2.39 -0.01 3.28 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.12 4.72 7.15 -2.91 -0.02 4.70 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.17 2.62 7.20 -2.91 -0.02 2.60 16 31 H 0.24 3.58 7.57 -2.91 -0.02 3.55 16 32 H 0.23 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -78.19 272.27 6.56 -71.63 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.13 Total: 9.27 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 4.19 Total: -42.28 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -0.78 Total: -85.72 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.19 6.56 -71.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.190 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds