Wall clock time and date at job start Mon Mar 30 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37794 * 120.10944 * 2 1 4 4 C 1.38789 * 120.66435 * 179.97438 * 3 2 1 5 5 C 1.36664 * 120.52958 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.11794 * 179.97438 * 5 4 3 7 7 C 1.39590 * 119.76145 * 0.02562 * 5 4 3 8 8 C 1.46496 * 134.03329 * 179.97438 * 7 5 4 9 9 C 1.50694 * 126.49871 * 359.97438 * 8 7 5 10 10 C 1.53005 * 109.46883 * 273.34371 * 9 8 7 11 11 C 1.50704 * 109.47429 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99428 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00184 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99997 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47146 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47449 * 120.00072 * 15 13 11 18 18 H 1.48508 * 109.47015 * 240.00182 * 15 13 11 19 19 C 1.34239 * 106.99531 * 180.02562 * 8 7 5 20 20 N 1.36825 * 109.94071 * 0.02562 * 19 8 7 21 21 H 0.97003 * 125.05904 * 180.02562 * 20 19 8 22 22 C 1.37687 * 109.87791 * 359.76428 * 20 19 8 23 23 H 1.09005 * 109.47008 * 89.99435 * 1 2 3 24 24 H 1.08998 * 109.46841 * 330.00368 * 1 2 3 25 25 H 1.09000 * 109.47015 * 209.99967 * 1 2 3 26 26 H 1.07999 * 119.66994 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.73438 * 180.02562 * 4 3 2 28 28 H 1.09005 * 109.47398 * 95.46168 * 6 5 4 29 29 H 1.09001 * 109.47189 * 215.46297 * 6 5 4 30 30 H 1.08998 * 109.47231 * 335.46176 * 6 5 4 31 31 H 1.09001 * 109.47877 * 33.34260 * 9 8 7 32 32 H 1.08998 * 109.47599 * 153.35036 * 9 8 7 33 33 H 1.08999 * 109.47334 * 300.00062 * 10 9 8 34 34 H 1.09000 * 109.47351 * 60.00124 * 10 9 8 35 35 H 0.97004 * 120.00269 * 180.02562 * 14 13 11 36 36 H 1.08006 * 125.02044 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.2917 0.0351 0.0016 6 6 5.7984 0.0605 0.0016 7 6 3.6117 -1.1840 0.0016 8 6 4.0354 -2.5863 0.0021 9 6 5.4543 -3.0940 0.0022 10 6 5.9627 -3.1870 -1.4379 11 6 7.3815 -3.6953 -1.4380 12 1 7.8713 -3.9290 -0.5042 13 6 8.0540 -3.8620 -2.6299 14 7 7.4576 -3.5769 -3.7668 15 14 9.8123 -4.4926 -2.6300 16 1 10.2507 -4.7367 -1.2322 17 1 9.8835 -5.7603 -3.4001 18 1 10.7008 -3.4816 -3.2575 19 6 2.9200 -3.3333 0.0012 20 7 1.8166 -2.5242 -0.0003 21 1 0.8977 -2.8350 -0.0008 22 6 2.2047 -1.2032 0.0048 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.6547 2.1252 0.0004 27 1 4.1127 2.1484 0.0009 28 1 6.1634 -0.0303 1.0247 29 1 6.1759 -0.7708 -0.5939 30 1 6.1460 1.0009 -0.4260 31 1 6.0857 -2.4079 0.5668 32 1 5.4871 -4.0810 0.4635 33 1 5.3314 -3.8731 -2.0025 34 1 5.9300 -2.2001 -1.8993 35 1 7.9307 -3.6945 -4.6055 36 1 2.8972 -4.4131 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:36 Heat of formation + Delta-G solvation = 27.914281 kcal Electronic energy + Delta-G solvation = -16937.589371 eV Core-core repulsion = 14385.857346 eV Total energy + Delta-G solvation = -2551.732025 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95734 -36.93897 -34.65849 -33.17438 -31.48765 -29.19019 -29.04272 -27.93316 -24.87410 -24.24423 -21.60694 -21.48121 -21.06999 -18.06160 -16.94220 -16.15473 -15.84979 -14.83836 -14.51571 -14.33429 -14.28373 -13.22225 -13.08948 -12.81373 -12.67594 -12.52916 -12.33713 -12.00443 -11.95547 -11.49402 -11.04236 -10.95215 -10.76234 -10.73505 -10.54635 -10.38490 -9.66655 -9.63293 -9.00000 -8.64327 -8.28721 -7.81541 -6.98897 -5.93600 -3.96305 1.47514 2.00822 3.19025 3.34340 3.42012 3.46073 3.50990 4.22055 4.51116 4.98476 5.08954 5.24761 5.37720 5.41821 5.43585 5.57717 5.60597 5.81107 5.87819 6.00566 6.07953 6.15996 6.21103 6.31374 6.47948 6.70691 6.72055 6.81731 6.88344 7.02372 7.15304 7.18830 7.36979 7.60119 7.79602 7.90317 7.97347 8.10102 8.48935 9.12029 9.67561 11.17232 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034172 B = 0.005626 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.189475 B = 4975.405428 C = 5382.699850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.161 4.161 5 C -0.023 4.023 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.132 4.132 9 C -0.049 4.049 10 C 0.030 3.970 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.023 3.977 20 N -0.599 5.599 21 H 0.408 0.592 22 C 0.101 3.899 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 6.321 8.256 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.180 4.180 5 C -0.023 4.023 6 C -0.184 4.184 7 C -0.104 4.104 8 C -0.139 4.139 9 C -0.087 4.087 10 C -0.007 4.007 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.100 4.100 20 N -0.202 5.202 21 H 0.244 0.756 22 C -0.006 4.006 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.316 6.224 8.069 15.986 hybrid contribution 0.445 -0.539 -0.245 0.741 sum -11.871 5.685 7.824 15.312 Atomic orbital electron populations 1.20610 0.91934 1.01907 1.01648 1.18710 0.94797 0.90370 1.08125 1.20551 0.94029 0.95953 1.01380 1.20428 0.93713 0.97234 1.06633 1.19170 0.96031 0.91035 0.96100 1.21036 0.91025 1.03872 1.02502 1.19026 0.91450 0.93299 1.06662 1.20806 0.96167 0.90292 1.06592 1.20268 0.88344 0.98890 1.01186 1.19092 0.95098 0.97239 0.89302 1.21333 0.98476 1.43490 0.92433 0.92606 1.25010 0.97933 0.95709 0.95714 1.69989 1.36992 1.49031 0.97393 0.86595 0.85215 0.78500 0.78043 1.19717 1.21136 1.21078 1.21556 0.85041 0.96067 1.07386 1.41596 1.08098 1.03978 1.66552 0.75607 1.18023 0.93726 0.84568 1.04318 0.91839 0.91681 0.92840 0.86461 0.86528 0.91559 0.88656 0.92249 0.92134 0.92724 0.96783 0.96252 0.93157 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.02 36.01 0.36 -0.74 16 2 C -0.12 -1.69 5.89 -104.47 -0.62 -2.31 16 3 C -0.10 -1.41 9.67 -39.54 -0.38 -1.79 16 4 C -0.16 -2.48 9.60 -39.95 -0.38 -2.86 16 5 C -0.02 -0.41 5.87 -104.69 -0.61 -1.02 16 6 C -0.13 -2.22 8.95 36.00 0.32 -1.90 16 7 C -0.10 -1.89 6.15 -105.13 -0.65 -2.53 16 8 C -0.13 -2.56 5.57 -102.71 -0.57 -3.13 16 9 C -0.05 -1.04 4.78 -27.88 -0.13 -1.17 16 10 C 0.03 0.78 4.59 -27.88 -0.13 0.65 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.02 0.38 11.73 -16.73 -0.20 0.18 16 20 N -0.60 -8.71 6.07 -10.65 -0.06 -8.78 16 21 H 0.41 4.42 8.87 -40.82 -0.36 4.06 16 22 C 0.10 1.69 6.95 -83.99 -0.58 1.10 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.05 0.51 7.99 -51.93 -0.42 0.09 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.95 4.74 -51.93 -0.25 1.70 16 30 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 31 H 0.06 1.26 6.56 -51.93 -0.34 0.92 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.54 6.84 -51.93 -0.36 0.19 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -32.04 298.47 -8.89 -40.93 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.06 Total: 2.03 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -3.98 Total: -28.92 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.67 Total: -35.20 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.04 -8.89 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.847 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds