Wall clock time and date at job start Mon Mar 30 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37794 * 120.10944 * 2 1 4 4 C 1.38789 * 120.66435 * 179.97438 * 3 2 1 5 5 C 1.36664 * 120.52958 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.11794 * 179.97438 * 5 4 3 7 7 C 1.39590 * 119.76145 * 0.02562 * 5 4 3 8 8 C 1.46496 * 134.03329 * 179.97438 * 7 5 4 9 9 C 1.50694 * 126.49871 * 359.97438 * 8 7 5 10 10 C 1.53005 * 109.46883 * 273.34371 * 9 8 7 11 11 C 1.50704 * 109.47429 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99428 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00184 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99997 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47146 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47449 * 120.00072 * 15 13 11 18 18 H 1.48508 * 109.47015 * 240.00182 * 15 13 11 19 19 C 1.34239 * 106.99531 * 180.02562 * 8 7 5 20 20 N 1.36825 * 109.94071 * 0.02562 * 19 8 7 21 21 H 0.97003 * 125.05904 * 180.02562 * 20 19 8 22 22 C 1.37687 * 109.87791 * 359.76428 * 20 19 8 23 23 H 1.09005 * 109.47008 * 89.99435 * 1 2 3 24 24 H 1.08998 * 109.46841 * 330.00368 * 1 2 3 25 25 H 1.09000 * 109.47015 * 209.99967 * 1 2 3 26 26 H 1.07999 * 119.66994 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.73438 * 180.02562 * 4 3 2 28 28 H 1.09005 * 109.47398 * 95.46168 * 6 5 4 29 29 H 1.09001 * 109.47189 * 215.46297 * 6 5 4 30 30 H 1.08998 * 109.47231 * 335.46176 * 6 5 4 31 31 H 1.09001 * 109.47877 * 33.34260 * 9 8 7 32 32 H 1.08998 * 109.47599 * 153.35036 * 9 8 7 33 33 H 1.08999 * 109.47334 * 300.00062 * 10 9 8 34 34 H 1.09000 * 109.47351 * 60.00124 * 10 9 8 35 35 H 0.97004 * 120.00269 * 180.02562 * 14 13 11 36 36 H 1.08006 * 125.02044 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.2917 0.0351 0.0016 6 6 5.7984 0.0605 0.0016 7 6 3.6117 -1.1840 0.0016 8 6 4.0354 -2.5863 0.0021 9 6 5.4543 -3.0940 0.0022 10 6 5.9627 -3.1870 -1.4379 11 6 7.3815 -3.6953 -1.4380 12 1 7.8713 -3.9290 -0.5042 13 6 8.0540 -3.8620 -2.6299 14 7 7.4576 -3.5769 -3.7668 15 14 9.8123 -4.4926 -2.6300 16 1 10.2507 -4.7367 -1.2322 17 1 9.8835 -5.7603 -3.4001 18 1 10.7008 -3.4816 -3.2575 19 6 2.9200 -3.3333 0.0012 20 7 1.8166 -2.5242 -0.0003 21 1 0.8977 -2.8350 -0.0008 22 6 2.2047 -1.2032 0.0048 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.6547 2.1252 0.0004 27 1 4.1127 2.1484 0.0009 28 1 6.1634 -0.0303 1.0247 29 1 6.1759 -0.7708 -0.5939 30 1 6.1460 1.0009 -0.4260 31 1 6.0857 -2.4079 0.5668 32 1 5.4871 -4.0810 0.4635 33 1 5.3314 -3.8731 -2.0025 34 1 5.9300 -2.2001 -1.8993 35 1 7.9307 -3.6945 -4.6055 36 1 2.8972 -4.4131 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:35 Heat of formation + Delta-G solvation = 10.152559 kcal Electronic energy + Delta-G solvation = -16938.359577 eV Core-core repulsion = 14385.857346 eV Total energy + Delta-G solvation = -2552.502231 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19829 -38.13422 -36.29730 -34.84912 -33.22606 -30.50250 -30.34066 -29.37202 -26.69369 -25.48574 -23.20170 -22.79846 -22.54508 -19.53203 -18.36078 -18.10659 -17.07644 -16.49295 -16.03521 -15.62643 -15.52519 -14.77836 -14.54031 -14.08137 -13.96815 -13.92691 -13.78972 -13.37910 -13.31576 -12.98090 -12.84826 -12.57154 -12.35810 -12.19984 -11.91085 -11.82738 -11.61286 -11.36739 -11.11205 -10.51659 -10.00875 -9.05012 -8.29511 -8.12582 -6.26701 0.25800 0.78705 1.41500 1.41950 1.55419 1.85164 2.34534 2.44401 2.98379 3.17556 3.87149 3.98526 4.11481 4.27056 4.34843 4.40571 4.57691 4.68176 4.74965 4.82736 4.84529 4.89057 4.99518 5.00872 5.10342 5.17700 5.23570 5.29714 5.41785 5.58643 5.67103 5.77682 5.81328 5.91922 5.96195 6.04171 6.30121 6.36466 6.83549 6.91613 7.42503 8.96572 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034172 B = 0.005626 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.189475 B = 4975.405428 C = 5382.699850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.157 4.157 5 C -0.061 4.061 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.183 4.183 9 C -0.030 4.030 10 C 0.043 3.957 11 C -0.537 4.537 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.043 3.957 20 N -0.583 5.583 21 H 0.428 0.572 22 C 0.084 3.916 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.154 0.846 27 H 0.138 0.862 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.061 0.939 33 H -0.016 1.016 34 H -0.013 1.013 35 H 0.262 0.738 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 6.824 9.208 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 C -0.124 4.124 4 C -0.176 4.176 5 C -0.062 4.062 6 C -0.176 4.176 7 C -0.137 4.137 8 C -0.190 4.190 9 C -0.068 4.068 10 C 0.006 3.994 11 C -0.575 4.575 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.082 4.082 20 N -0.187 5.187 21 H 0.267 0.733 22 C -0.023 4.023 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.171 0.829 27 H 0.156 0.844 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.002 0.998 34 H 0.005 0.995 35 H 0.071 0.929 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.708 6.732 9.040 17.747 hybrid contribution 0.768 -0.639 -0.547 1.138 sum -12.940 6.093 8.493 16.635 Atomic orbital electron populations 1.20688 0.88844 1.03631 1.02713 1.19233 0.97060 0.89483 1.05921 1.21010 0.93610 0.97438 1.00303 1.20759 0.94744 0.97141 1.04981 1.19364 0.96074 0.91977 0.98757 1.20901 0.91646 1.02840 1.02258 1.19337 0.93143 0.93384 1.07815 1.20702 0.95783 0.91655 1.10888 1.19897 0.90081 0.99226 0.97578 1.18883 0.94221 0.94287 0.91992 1.21753 0.99566 1.43350 0.92848 0.92017 1.25963 1.02780 0.95785 0.95189 1.70134 1.39105 1.50218 0.98167 0.85427 0.79232 0.77901 0.78659 1.18371 1.20422 1.20552 1.21889 0.84795 0.97172 1.04375 1.41532 1.08700 1.03206 1.65312 0.73259 1.18323 0.93096 0.85929 1.04987 0.90920 0.89521 0.91683 0.82886 0.84430 0.90860 0.92615 0.90805 0.92584 0.92064 0.99774 0.99515 0.92949 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.02 71.24 0.71 -1.06 16 2 C -0.11 -3.01 5.89 -19.77 -0.12 -3.13 16 3 C -0.10 -2.67 9.67 22.30 0.22 -2.46 16 4 C -0.16 -4.66 9.60 22.03 0.21 -4.45 16 5 C -0.06 -2.23 5.87 -19.91 -0.12 -2.35 16 6 C -0.12 -4.38 8.95 71.23 0.64 -3.74 16 7 C -0.13 -5.11 6.15 -20.20 -0.12 -5.24 16 8 C -0.18 -7.34 5.57 -18.63 -0.10 -7.44 16 9 C -0.03 -1.33 4.78 29.85 0.14 -1.19 16 10 C 0.04 2.40 4.59 29.85 0.14 2.53 16 11 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.94 -58.62 13.29 21.44 0.28 -58.33 16 15 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 C 0.04 1.40 11.73 83.00 0.97 2.37 16 20 N -0.58 -16.03 6.07 -187.61 -1.14 -17.17 16 21 H 0.43 8.14 8.87 -92.71 -0.82 7.31 16 22 C 0.08 2.72 6.95 39.03 0.27 2.99 16 23 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 25 H 0.06 0.98 7.99 -2.39 -0.02 0.96 16 26 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.14 3.35 8.05 -2.91 -0.02 3.33 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.05 2.46 4.74 -2.39 -0.01 2.45 16 30 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 31 H 0.06 2.48 6.56 -2.39 -0.02 2.46 16 32 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.01 -0.83 6.84 -2.39 -0.02 -0.84 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -72.08 298.47 4.97 -67.12 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.26 Total: 15.04 kcal Atomic # 6 Polarization: -57.28 SS G_CDS: 3.54 Total: -53.74 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -0.85 Total: -75.50 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.08 4.97 -67.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.271 kcal (2) G-P(sol) polarization free energy of solvation -72.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds