Wall clock time and date at job start Mon Mar 30 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38934 * 119.70122 * 2 1 4 4 C 1.37960 * 120.69751 * 179.97438 * 3 2 1 5 5 C 1.38933 * 119.89751 * 0.02562 * 4 3 2 6 6 C 1.41195 * 119.37246 * 0.02562 * 5 4 3 7 7 C 1.40934 * 107.27316 * 179.97438 * 6 5 4 8 8 C 1.39124 * 107.49529 * 0.02562 * 7 6 5 9 9 C 1.39927 * 125.69385 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99901 * 180.02562 * 9 8 7 11 11 C 1.40189 * 119.99960 * 0.02562 * 9 8 7 12 12 N 1.30745 * 120.00059 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99876 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47169 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47176 * 120.00191 * 13 11 9 16 16 H 1.48501 * 109.47250 * 240.00485 * 13 11 9 17 17 N 1.38035 * 132.80320 * 179.70557 * 5 4 3 18 18 C 1.46503 * 125.60165 * 0.28710 * 17 5 4 19 19 C 1.52997 * 109.47377 * 119.99779 * 18 17 5 20 20 C 1.52997 * 109.47287 * 240.00413 * 18 17 5 21 21 C 1.36434 * 119.70379 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47185 * 269.97588 * 1 2 3 23 23 H 1.08997 * 109.47063 * 29.97857 * 1 2 3 24 24 H 1.09002 * 109.46790 * 149.97911 * 1 2 3 25 25 H 1.08005 * 119.65456 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.05141 * 180.02562 * 4 3 2 27 27 H 1.08002 * 126.25168 * 180.02562 * 7 6 5 28 28 H 0.96998 * 120.00074 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.46650 * 0.02562 * 18 17 5 30 30 H 1.08993 * 109.47404 * 179.97438 * 19 18 17 31 31 H 1.09004 * 109.47497 * 300.00618 * 19 18 17 32 32 H 1.09010 * 109.46999 * 59.99981 * 19 18 17 33 33 H 1.08996 * 109.47388 * 59.99717 * 20 18 17 34 34 H 1.09003 * 109.47523 * 180.02562 * 20 18 17 35 35 H 1.09003 * 109.47231 * 299.99590 * 20 18 17 36 36 H 1.07997 * 120.09987 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2068 0.0000 4 6 3.5748 1.2308 0.0005 5 6 4.2882 0.0386 0.0005 6 6 3.5879 -1.1875 -0.0006 7 6 4.5489 -2.2183 -0.0009 8 6 5.8047 -1.6194 0.0006 9 6 7.0308 -2.2937 0.0013 10 1 7.9547 -1.7343 0.0029 11 6 7.0599 -3.6953 0.0000 12 7 5.9415 -4.3724 -0.0025 13 14 8.6967 -4.5954 0.0016 14 1 9.8051 -3.6071 0.0049 15 1 8.7912 -5.4486 1.2134 16 1 8.7951 -5.4461 -1.2116 17 7 5.6388 -0.2463 -0.0042 18 6 6.7191 0.7433 -0.0050 19 6 7.5861 0.5529 1.2412 20 6 7.5786 0.5591 -1.2573 21 6 2.1831 -1.1851 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6449 2.1360 0.0004 26 1 4.0993 2.1749 0.0009 27 1 4.3474 -3.2794 -0.0021 28 1 5.9616 -5.3422 -0.0037 29 1 6.2928 1.7465 -0.0008 30 1 8.3901 1.2888 1.2404 31 1 6.9738 0.6841 2.1334 32 1 8.0123 -0.4504 1.2374 33 1 6.9609 0.6948 -2.1451 34 1 8.3827 1.2950 -1.2577 35 1 8.0049 -0.4441 -1.2611 36 1 1.6399 -2.1185 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:19 Heat of formation + Delta-G solvation = 21.806876 kcal Electronic energy + Delta-G solvation = -17432.855277 eV Core-core repulsion = 14880.858415 eV Total energy + Delta-G solvation = -2551.996862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64841 -38.33889 -35.88828 -35.11108 -32.50839 -31.06257 -29.94034 -28.06972 -27.37974 -26.28069 -23.13271 -22.77512 -21.17069 -20.30582 -18.70265 -17.54566 -17.23530 -15.83470 -15.57284 -15.41607 -15.26766 -14.81678 -14.40933 -14.25741 -13.89052 -13.59143 -13.54295 -13.21277 -12.99986 -12.95219 -12.92129 -12.59957 -12.35697 -12.26092 -12.03061 -11.83679 -11.63306 -11.33444 -11.13578 -10.95949 -10.11089 -8.75400 -8.48586 -8.07137 -6.25869 0.62884 1.09866 1.39970 1.42461 1.55770 2.15612 2.29072 2.50869 3.27357 3.51749 3.86116 4.10127 4.21250 4.29043 4.33349 4.47912 4.62859 4.75517 4.77050 4.86045 4.89414 4.92544 4.96543 5.01728 5.06668 5.22841 5.29510 5.36053 5.38032 5.47244 5.61505 5.89842 5.93334 6.10262 6.13853 6.25950 6.56771 6.82441 6.89879 7.19086 7.36805 8.38119 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.008199 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.245269 B = 3414.321804 C = 4352.509119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.111 4.111 3 C -0.169 4.169 4 C -0.121 4.121 5 C 0.017 3.983 6 C -0.080 4.080 7 C -0.380 4.380 8 C 0.253 3.747 9 C -0.459 4.459 10 H 0.099 0.901 11 C 0.023 3.977 12 N -0.815 5.815 13 Si 0.997 3.003 14 H -0.248 1.248 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.510 5.510 18 C 0.139 3.861 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.158 4.158 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.139 0.861 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.284 0.716 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 7.532 0.004 7.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.188 4.188 4 C -0.142 4.142 5 C -0.086 4.086 6 C -0.085 4.085 7 C -0.403 4.403 8 C 0.147 3.853 9 C -0.491 4.491 10 H 0.117 0.883 11 C -0.192 4.192 12 N -0.441 5.441 13 Si 0.817 3.183 14 H -0.171 1.171 15 H -0.194 1.194 16 H -0.193 1.193 17 N -0.201 5.201 18 C 0.037 3.963 19 C -0.218 4.218 20 C -0.217 4.217 21 C -0.177 4.177 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.760 7.525 -0.002 7.728 hybrid contribution 0.365 -0.925 0.015 0.994 sum 2.125 6.601 0.013 6.934 Atomic orbital electron populations 1.20657 0.89652 1.02687 1.02226 1.19514 0.96905 0.92359 1.02461 1.20609 0.92507 0.97460 1.08189 1.20088 0.94330 0.94099 1.05699 1.18631 0.84111 0.95506 1.10394 1.18840 0.93913 0.94077 1.01682 1.21749 0.90685 0.98364 1.29483 1.18323 0.95104 0.79737 0.92147 1.19247 0.92101 0.91812 1.45953 0.88316 1.26895 1.02042 0.98314 0.91975 1.69878 1.29790 1.09069 1.35331 0.84925 0.76530 0.78221 0.78652 1.17082 1.19361 1.19350 1.44617 1.03229 1.05405 1.66815 1.21212 0.87085 0.90986 0.96988 1.22203 0.99915 1.03734 0.95952 1.22188 0.99940 1.03686 0.95908 1.20210 0.91813 0.97553 1.08107 0.91153 0.90383 0.92199 0.84362 0.86049 0.84434 0.90517 0.89013 0.88435 0.93938 0.92067 0.93921 0.88426 0.92136 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.78 9.99 71.24 0.71 -2.07 16 2 C -0.11 -4.39 5.84 -20.12 -0.12 -4.51 16 3 C -0.17 -6.35 9.67 22.37 0.22 -6.14 16 4 C -0.12 -5.00 9.81 22.37 0.22 -4.78 16 5 C 0.02 0.82 6.81 39.06 0.27 1.08 16 6 C -0.08 -4.35 6.14 -21.35 -0.13 -4.48 16 7 C -0.38 -22.39 9.80 23.14 0.23 -22.16 16 8 C 0.25 13.81 6.22 38.74 0.24 14.05 16 9 C -0.46 -23.39 7.36 23.15 0.17 -23.22 16 10 H 0.10 4.56 4.36 -2.91 -0.01 4.55 16 11 C 0.02 1.15 5.50 85.33 0.47 1.62 16 12 N -0.81 -43.31 10.18 21.87 0.22 -43.09 16 13 Si 1.00 36.93 29.56 68.60 2.03 38.96 16 14 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 15 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 17 N -0.51 -24.44 2.70 -484.44 -1.31 -25.75 16 18 C 0.14 5.09 3.41 44.99 0.15 5.25 16 19 C -0.16 -5.30 9.17 71.98 0.66 -4.64 16 20 C -0.16 -5.27 9.18 71.98 0.66 -4.61 16 21 C -0.16 -7.52 9.69 22.39 0.22 -7.30 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 24 H 0.06 1.67 8.07 -2.39 -0.02 1.65 16 25 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 26 H 0.12 4.23 7.54 -2.91 -0.02 4.21 16 27 H 0.14 8.61 5.58 -2.91 -0.02 8.60 16 28 H 0.28 13.64 8.29 -92.71 -0.77 12.87 16 29 H 0.09 2.99 7.34 -2.39 -0.02 2.97 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 2.28 5.42 -2.38 -0.01 2.26 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.25 5.50 -2.39 -0.01 2.24 16 36 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -64.40 289.39 5.98 -58.42 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 1.07 Total: 33.37 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 3.96 Total: -61.91 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.08 Total: -68.84 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -64.40 5.98 -58.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.228 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds