Wall clock time and date at job start Mon Mar 30 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46732 * 2 1 4 4 C 1.50700 * 109.47133 * 240.00147 * 2 1 3 5 5 H 1.08001 * 120.00013 * 245.69976 * 4 2 1 6 6 C 1.37882 * 120.00169 * 65.69593 * 4 2 1 7 7 N 1.31507 * 120.00577 * 195.91105 * 6 4 2 8 8 Si 1.86805 * 119.99516 * 15.91146 * 6 4 2 9 9 H 1.48500 * 109.46914 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47393 * 299.99909 * 8 6 4 11 11 H 1.48499 * 109.47104 * 59.99859 * 8 6 4 12 12 C 1.50699 * 109.47000 * 120.00602 * 2 1 3 13 13 C 1.38134 * 120.03729 * 65.66198 * 12 2 1 14 14 C 1.38258 * 120.06512 * 180.02562 * 13 12 2 15 15 C 1.38297 * 120.13917 * 359.97438 * 14 13 12 16 16 C 1.38101 * 120.06213 * 0.02562 * 15 14 13 17 17 C 1.38823 * 120.02711 * 245.39523 * 12 2 1 18 18 N 1.40207 * 120.06849 * 359.97434 * 17 12 2 19 19 N 1.28594 * 124.60616 * 228.22370 * 18 17 12 20 20 C 1.31420 * 108.72533 * 179.87039 * 19 18 17 21 21 C 1.39741 * 105.87816 * 0.37061 * 20 19 18 22 22 N 1.28592 * 124.61217 * 48.52087 * 18 17 12 23 23 H 1.08993 * 109.47323 * 307.15109 * 1 2 3 24 24 H 1.08998 * 109.47013 * 67.15300 * 1 2 3 25 25 H 1.09004 * 109.47122 * 187.15089 * 1 2 3 26 26 H 0.97005 * 119.99608 * 354.88352 * 7 6 4 27 27 H 1.08005 * 119.96575 * 0.03271 * 13 12 2 28 28 H 1.08007 * 119.92893 * 180.02562 * 14 13 12 29 29 H 1.07992 * 119.97002 * 179.97438 * 15 14 13 30 30 H 1.08000 * 120.03507 * 180.02562 * 16 15 14 31 31 H 1.07999 * 127.06079 * 180.18946 * 20 19 18 32 32 H 1.08003 * 127.05377 * 179.73220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5752 -1.6390 -1.1341 6 6 1.7988 -0.1748 -2.4794 7 7 1.9478 -0.9198 -3.5528 8 14 1.2707 1.6092 -2.6466 9 1 1.0861 1.9382 -4.0829 10 1 -0.0089 1.8167 -1.9223 11 1 2.3158 2.4912 -2.0677 12 6 2.0323 -0.7105 1.2304 13 6 1.7981 -2.0622 1.3923 14 6 2.2582 -2.7146 2.5211 15 6 2.9545 -2.0167 3.4911 16 6 3.1917 -0.6652 3.3349 17 6 2.7357 -0.0083 2.1996 18 7 2.9802 1.3624 2.0352 19 7 4.1259 1.9242 2.1950 20 6 4.0010 3.2113 1.9607 21 6 2.6552 3.4133 1.6433 22 7 2.0884 2.2296 1.7094 23 1 -0.3633 0.6206 0.8190 24 1 -0.3633 0.3990 -0.9470 25 1 -0.3633 -1.0197 0.1279 26 1 2.2930 -1.8228 -3.4723 27 1 1.2552 -2.6100 0.6362 28 1 2.0743 -3.7716 2.6453 29 1 3.3123 -2.5289 4.3720 30 1 3.7358 -0.1208 4.0924 31 1 4.7783 3.9597 2.0070 32 1 2.1786 4.3502 1.3953 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:14 Heat of formation + Delta-G solvation = 142.974650 kcal Electronic energy + Delta-G solvation = -17349.523825 eV Core-core repulsion = 14699.240849 eV Total energy + Delta-G solvation = -2650.282976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.39282 -39.09275 -34.66916 -33.43011 -32.20411 -31.64213 -29.54764 -28.62917 -24.75825 -23.72113 -23.30584 -22.09617 -20.81333 -19.60784 -17.77862 -17.45226 -16.40187 -15.63231 -14.93696 -14.65640 -14.20990 -13.99269 -13.55040 -13.33957 -12.81343 -12.51410 -11.96523 -11.76785 -11.40768 -11.24509 -11.12904 -10.55279 -10.50568 -10.36806 -10.11644 -9.69571 -9.67377 -9.52287 -8.95683 -8.45481 -8.27750 -8.07260 -6.48297 -4.11337 1.26748 1.73272 2.35730 2.71004 2.77502 3.38285 3.42978 3.60165 3.99139 4.46200 4.68157 5.13953 5.14551 5.25814 5.26503 5.37622 5.57360 5.65916 5.81615 5.98890 6.22120 6.28098 6.37628 6.50404 6.54797 6.64796 6.73603 6.82147 6.83473 7.06000 7.21659 7.39539 7.52998 8.02159 8.33056 8.67583 8.84797 9.55892 10.90870 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.011870 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.884857 B = 2358.239995 C = 3427.186401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 H 0.043 0.957 4 C -0.595 4.595 5 H 0.059 0.941 6 C 0.034 3.966 7 N -0.905 5.905 8 Si 1.041 2.959 9 H -0.286 1.286 10 H -0.269 1.269 11 H -0.285 1.285 12 C 0.003 3.997 13 C -0.100 4.100 14 C -0.106 4.106 15 C -0.135 4.135 16 C -0.096 4.096 17 C 0.112 3.888 18 N -0.091 5.091 19 N -0.288 5.288 20 C -0.032 4.032 21 C -0.039 4.039 22 N -0.266 5.266 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.267 0.733 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.197 0.803 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 3.674 12.942 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.019 3.981 3 H 0.061 0.939 4 C -0.633 4.633 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.539 5.539 8 Si 0.870 3.130 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.211 1.211 12 C 0.000 4.000 13 C -0.118 4.118 14 C -0.125 4.125 15 C -0.154 4.154 16 C -0.116 4.116 17 C 0.023 3.977 18 N 0.015 4.985 19 N -0.128 5.128 20 C -0.215 4.215 21 C -0.221 4.221 22 N -0.105 5.105 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.214 0.786 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.031 3.525 11.980 12.488 hybrid contribution 0.896 -0.117 0.895 1.272 sum 0.927 3.408 12.875 13.350 Atomic orbital electron populations 1.22152 0.97252 0.99902 1.00307 1.18355 0.92992 0.96398 0.90342 0.93923 1.21982 1.40804 1.09899 0.90631 0.92293 1.25708 0.94689 1.04713 0.91979 1.70868 1.41318 1.10560 1.31125 0.84098 0.77491 0.75546 0.75880 1.21152 1.19547 1.21149 1.20359 0.92183 0.93812 0.93620 1.21046 1.00111 0.93300 0.97375 1.21311 0.97287 0.99895 0.94002 1.20801 1.01404 0.93115 1.00079 1.20839 1.00081 0.95229 0.95493 1.17234 1.06234 0.76864 0.97341 1.44727 1.01616 1.06849 1.45333 1.74116 1.09599 1.09321 1.19721 1.24778 0.98121 0.92739 1.05860 1.24861 0.93639 0.96832 1.06778 1.74270 1.21544 0.98877 1.15848 0.95209 0.92358 0.93835 0.92242 0.84513 0.85765 0.85553 0.85739 0.78649 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.80 37.16 0.33 -2.82 16 2 C 0.04 0.94 1.70 -92.92 -0.16 0.78 16 3 H 0.04 1.10 4.14 -51.93 -0.21 0.88 16 4 C -0.60 -16.79 8.40 -34.44 -0.29 -17.08 16 5 H 0.06 1.77 7.59 -52.49 -0.40 1.37 16 6 C 0.03 1.00 5.31 -17.82 -0.09 0.90 16 7 N -0.90 -27.85 13.70 55.43 0.76 -27.09 16 8 Si 1.04 26.05 26.25 -169.99 -4.46 21.59 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.27 -6.23 5.69 56.52 0.32 -5.91 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.00 0.06 4.77 -104.44 -0.50 -0.44 16 13 C -0.10 -1.90 8.43 -39.61 -0.33 -2.23 16 14 C -0.11 -1.63 10.04 -39.55 -0.40 -2.02 16 15 C -0.14 -1.95 10.04 -39.61 -0.40 -2.35 16 16 C -0.10 -1.61 9.83 -39.40 -0.39 -1.99 16 17 C 0.11 2.28 6.27 -83.58 -0.52 1.75 16 18 N -0.09 -1.88 3.56 32.49 0.12 -1.77 16 19 N -0.29 -5.50 11.87 30.70 0.36 -5.14 16 20 C -0.03 -0.50 12.20 -17.17 -0.21 -0.71 16 21 C -0.04 -0.62 12.20 -17.17 -0.21 -0.83 16 22 N -0.27 -5.35 9.61 30.69 0.29 -5.06 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.37 4.75 -51.93 -0.25 1.12 16 25 H 0.04 0.92 7.53 -51.93 -0.39 0.53 16 26 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 27 H 0.14 2.64 7.73 -52.48 -0.41 2.24 16 28 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.20 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 271.78 15.07 4.10 4.10 Total: -1.00 -33.10 271.78 -5.43 -38.53 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.43 Total: 1.88 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.17 Total: -27.04 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.53 Total: -39.05 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.46 Total: 21.59 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.10 -5.43 -38.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.505 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds