Wall clock time and date at job start Mon Mar 30 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46732 * 2 1 4 4 C 1.50700 * 109.47133 * 240.00147 * 2 1 3 5 5 H 1.08001 * 120.00013 * 245.69976 * 4 2 1 6 6 C 1.37882 * 120.00169 * 65.69593 * 4 2 1 7 7 N 1.31507 * 120.00577 * 195.91105 * 6 4 2 8 8 Si 1.86805 * 119.99516 * 15.91146 * 6 4 2 9 9 H 1.48500 * 109.46914 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47393 * 299.99909 * 8 6 4 11 11 H 1.48499 * 109.47104 * 59.99859 * 8 6 4 12 12 C 1.50699 * 109.47000 * 120.00602 * 2 1 3 13 13 C 1.38134 * 120.03729 * 65.66198 * 12 2 1 14 14 C 1.38258 * 120.06512 * 180.02562 * 13 12 2 15 15 C 1.38297 * 120.13917 * 359.97438 * 14 13 12 16 16 C 1.38101 * 120.06213 * 0.02562 * 15 14 13 17 17 C 1.38823 * 120.02711 * 245.39523 * 12 2 1 18 18 N 1.40207 * 120.06849 * 359.97434 * 17 12 2 19 19 N 1.28594 * 124.60616 * 228.22370 * 18 17 12 20 20 C 1.31420 * 108.72533 * 179.87039 * 19 18 17 21 21 C 1.39741 * 105.87816 * 0.37061 * 20 19 18 22 22 N 1.28592 * 124.61217 * 48.52087 * 18 17 12 23 23 H 1.08993 * 109.47323 * 307.15109 * 1 2 3 24 24 H 1.08998 * 109.47013 * 67.15300 * 1 2 3 25 25 H 1.09004 * 109.47122 * 187.15089 * 1 2 3 26 26 H 0.97005 * 119.99608 * 354.88352 * 7 6 4 27 27 H 1.08005 * 119.96575 * 0.03271 * 13 12 2 28 28 H 1.08007 * 119.92893 * 180.02562 * 14 13 12 29 29 H 1.07992 * 119.97002 * 179.97438 * 15 14 13 30 30 H 1.08000 * 120.03507 * 180.02562 * 16 15 14 31 31 H 1.07999 * 127.06079 * 180.18946 * 20 19 18 32 32 H 1.08003 * 127.05377 * 179.73220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5752 -1.6390 -1.1341 6 6 1.7988 -0.1748 -2.4794 7 7 1.9478 -0.9198 -3.5528 8 14 1.2707 1.6092 -2.6466 9 1 1.0861 1.9382 -4.0829 10 1 -0.0089 1.8167 -1.9223 11 1 2.3158 2.4912 -2.0677 12 6 2.0323 -0.7105 1.2304 13 6 1.7981 -2.0622 1.3923 14 6 2.2582 -2.7146 2.5211 15 6 2.9545 -2.0167 3.4911 16 6 3.1917 -0.6652 3.3349 17 6 2.7357 -0.0083 2.1996 18 7 2.9802 1.3624 2.0352 19 7 4.1259 1.9242 2.1950 20 6 4.0010 3.2113 1.9607 21 6 2.6552 3.4133 1.6433 22 7 2.0884 2.2296 1.7094 23 1 -0.3633 0.6206 0.8190 24 1 -0.3633 0.3990 -0.9470 25 1 -0.3633 -1.0197 0.1279 26 1 2.2930 -1.8228 -3.4723 27 1 1.2552 -2.6100 0.6362 28 1 2.0743 -3.7716 2.6453 29 1 3.3123 -2.5289 4.3720 30 1 3.7358 -0.1208 4.0924 31 1 4.7783 3.9597 2.0070 32 1 2.1786 4.3502 1.3953 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:14 Heat of formation + Delta-G solvation = 121.339626 kcal Electronic energy + Delta-G solvation = -17350.461990 eV Core-core repulsion = 14699.240849 eV Total energy + Delta-G solvation = -2651.221141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.69543 -40.47685 -36.48847 -34.75378 -33.89949 -33.30330 -30.93111 -30.09545 -26.81222 -25.06643 -24.75062 -23.47481 -22.24271 -21.26723 -19.56074 -19.12016 -17.82376 -16.98349 -16.22486 -16.04198 -15.72931 -15.52242 -15.09467 -14.87854 -14.59503 -14.25019 -13.70544 -13.36415 -13.01301 -12.71914 -12.49213 -12.44623 -12.06616 -11.86457 -11.71867 -11.55056 -11.30368 -11.02505 -10.91317 -10.43407 -9.83385 -9.49163 -8.76813 -6.41103 -0.06165 0.37649 1.03180 1.36536 1.41439 1.42023 1.59466 1.63056 2.38737 2.66101 3.00777 3.51475 3.80770 3.92835 4.07224 4.13724 4.38097 4.39023 4.46907 4.59950 4.69526 4.81940 4.87608 5.05292 5.11793 5.15976 5.23034 5.36053 5.39907 5.51489 5.65495 5.74461 5.96915 6.00579 6.11683 6.52732 7.33124 7.38466 8.59265 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.011870 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.884857 B = 2358.239995 C = 3427.186401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.041 3.959 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.024 0.976 6 C -0.016 4.016 7 N -0.937 5.937 8 Si 1.076 2.924 9 H -0.285 1.285 10 H -0.241 1.241 11 H -0.278 1.278 12 C -0.040 4.040 13 C -0.118 4.118 14 C -0.096 4.096 15 C -0.113 4.113 16 C -0.099 4.099 17 C 0.093 3.907 18 N -0.115 5.115 19 N -0.319 5.319 20 C -0.020 4.020 21 C -0.035 4.035 22 N -0.307 5.307 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.253 0.747 27 H 0.119 0.881 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 4.819 15.442 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.022 3.978 3 H 0.053 0.947 4 C -0.628 4.628 5 H 0.043 0.957 6 C -0.214 4.214 7 N -0.573 5.573 8 Si 0.899 3.101 9 H -0.211 1.211 10 H -0.165 1.165 11 H -0.204 1.204 12 C -0.042 4.042 13 C -0.137 4.137 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.119 4.119 17 C 0.004 3.996 18 N -0.007 5.007 19 N -0.158 5.158 20 C -0.203 4.203 21 C -0.217 4.217 22 N -0.146 5.146 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.137 0.863 28 H 0.181 0.819 29 H 0.193 0.807 30 H 0.159 0.841 31 H 0.259 0.741 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.303 4.640 14.508 15.235 hybrid contribution 0.909 -0.488 0.235 1.058 sum 1.212 4.152 14.743 15.364 Atomic orbital electron populations 1.22020 0.96219 1.00434 1.00182 1.18162 0.93794 0.95675 0.90152 0.94721 1.22185 1.39299 1.08614 0.92712 0.95746 1.26980 0.94753 1.07775 0.91937 1.70980 1.43917 1.10282 1.32116 0.83663 0.78764 0.71458 0.76217 1.21089 1.16501 1.20387 1.20209 0.95248 0.94976 0.93784 1.21062 1.01155 0.92679 0.98800 1.21689 0.95756 1.01624 0.92326 1.21361 0.98898 0.92123 1.00775 1.21187 0.99723 0.96319 0.94682 1.17532 1.06497 0.77450 0.98108 1.44811 1.01942 1.06962 1.47031 1.74073 1.09682 1.11033 1.21021 1.25627 0.99047 0.92289 1.03329 1.25678 0.94082 0.97114 1.04857 1.74200 1.22825 1.00294 1.17308 0.93532 0.93538 0.93486 0.93751 0.86257 0.81930 0.80747 0.84061 0.74122 0.74674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.80 71.98 0.63 -5.33 16 2 C 0.04 2.06 1.70 -12.29 -0.02 2.04 16 3 H 0.03 1.80 4.14 -2.39 -0.01 1.79 16 4 C -0.59 -34.60 8.40 25.60 0.22 -34.38 16 5 H 0.02 1.55 7.59 -2.91 -0.02 1.53 16 6 C -0.02 -0.97 5.31 84.66 0.45 -0.52 16 7 N -0.94 -59.87 13.70 21.45 0.29 -59.57 16 8 Si 1.08 52.91 26.25 68.60 1.80 54.71 16 9 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.24 -10.63 5.69 99.48 0.57 -10.07 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C -0.04 -1.75 4.77 -19.75 -0.09 -1.84 16 13 C -0.12 -4.53 8.43 22.25 0.19 -4.34 16 14 C -0.10 -2.69 10.04 22.29 0.22 -2.46 16 15 C -0.11 -2.85 10.04 22.25 0.22 -2.63 16 16 C -0.10 -3.10 9.83 22.39 0.22 -2.88 16 17 C 0.09 3.73 6.27 38.09 0.24 3.97 16 18 N -0.11 -4.64 3.56 -51.13 -0.18 -4.82 16 19 N -0.32 -11.72 11.87 -56.80 -0.67 -12.40 16 20 C -0.02 -0.56 12.20 85.12 1.04 0.48 16 21 C -0.03 -1.02 12.20 85.12 1.04 0.02 16 22 N -0.31 -12.00 9.61 -56.80 -0.55 -12.55 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.05 2.17 4.75 -2.39 -0.01 2.16 16 25 H 0.05 2.04 7.53 -2.38 -0.02 2.02 16 26 H 0.25 16.33 8.73 -92.70 -0.81 15.52 16 27 H 0.12 4.83 7.73 -2.91 -0.02 4.80 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.24 4.04 8.06 -2.91 -0.02 4.01 16 32 H 0.24 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -76.16 271.78 6.00 -70.17 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.95 Total: 12.34 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 4.35 Total: -47.88 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -1.11 Total: -89.34 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.80 Total: 54.71 kcal Total: -76.16 6.00 -70.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.507 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds