Wall clock time and date at job start Mon Mar 30 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46580 * 119.99651 * 2 1 3 5 5 H 1.08003 * 119.99163 * 120.00070 * 4 2 1 6 6 C 1.37876 * 120.00109 * 300.00008 * 4 2 1 7 7 N 1.31511 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99909 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46991 * 119.99849 * 8 6 4 11 11 H 1.48491 * 109.47453 * 240.00224 * 8 6 4 12 12 C 1.50694 * 109.47235 * 239.99511 * 2 1 3 13 13 C 1.38280 * 119.93501 * 120.00286 * 12 2 1 14 14 C 1.38122 * 120.06821 * 180.02562 * 13 12 2 15 15 C 1.38819 * 119.93144 * 0.02562 * 14 13 12 16 16 N 1.40254 * 120.06354 * 180.02562 * 15 14 13 17 17 C 1.36109 * 125.94575 * 179.97438 * 16 15 14 18 18 C 1.35374 * 106.05514 * 180.02562 * 17 16 15 19 19 N 1.33776 * 106.53371 * 359.97438 * 18 17 16 20 20 N 1.28607 * 109.06277 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.87268 * 0.28468 * 15 14 13 22 22 C 1.38130 * 119.93640 * 359.41741 * 21 15 14 23 23 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47476 * 300.00315 * 1 2 3 25 25 H 1.09008 * 109.46861 * 60.00306 * 1 2 3 26 26 H 0.97000 * 119.99738 * 179.97438 * 7 6 4 27 27 H 1.08005 * 119.96366 * 0.02562 * 13 12 2 28 28 H 1.07996 * 120.03235 * 180.02562 * 14 13 12 29 29 H 1.08003 * 126.97068 * 0.02562 * 17 16 15 30 30 H 1.07998 * 126.73273 * 179.97438 * 18 17 16 31 31 H 1.08008 * 120.03423 * 179.69488 * 21 15 14 32 32 H 1.07993 * 119.96762 * 180.31944 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3210 -1.1202 4.0081 9 1 3.1461 -2.2870 3.6039 10 1 3.1463 -0.1873 4.8166 11 1 1.1658 -1.5865 4.8161 12 6 2.0324 -0.7105 -1.2303 13 6 2.8273 -0.0373 -2.1397 14 6 3.2889 -0.6856 -3.2686 15 6 2.9534 -2.0143 -3.4901 16 7 3.4210 -2.6756 -4.6352 17 6 3.1674 -3.9703 -4.9696 18 6 3.8096 -4.1869 -6.1415 19 7 4.4133 -3.0372 -6.4630 20 7 4.1647 -2.1634 -5.5526 21 6 2.1499 -2.6857 -2.5787 22 6 1.6964 -2.0340 -1.4485 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7080 1.1610 3.4843 27 1 3.0876 0.9966 -1.9670 28 1 3.9100 -0.1594 -3.9782 29 1 2.5743 -4.6808 -4.4130 30 1 3.8303 -5.1073 -6.7062 31 1 1.8832 -3.7181 -2.7510 32 1 1.0755 -2.5573 -0.7365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:48 Heat of formation + Delta-G solvation = 120.529417 kcal Electronic energy + Delta-G solvation = -16384.501982 eV Core-core repulsion = 13733.245707 eV Total energy + Delta-G solvation = -2651.256275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.32337 -39.15849 -35.38319 -33.50288 -31.49128 -31.14807 -30.41499 -28.11619 -25.28169 -24.05183 -23.49425 -21.56523 -21.34179 -19.84158 -18.47598 -16.43584 -16.35436 -15.41569 -15.21830 -14.93525 -14.40832 -14.16723 -13.44088 -13.22491 -12.94665 -12.53986 -12.09259 -11.77096 -11.57135 -11.16827 -11.04953 -10.99546 -10.84724 -10.60108 -10.31764 -10.20984 -9.66768 -9.45602 -9.14443 -8.72955 -8.51519 -7.92886 -6.14844 -4.22943 0.89786 1.64433 2.24287 2.40803 2.56009 3.20586 3.29666 3.32922 4.09074 4.33610 4.42348 4.69755 5.00977 5.08670 5.16587 5.17067 5.39441 5.58498 5.77240 5.82020 5.95566 6.10229 6.24433 6.55085 6.62783 6.67476 6.81742 6.89241 6.98362 7.09572 7.31450 7.56220 7.76569 7.93559 8.20839 8.49222 8.79630 9.42980 10.90708 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.004961 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.390899 B = 5642.410258 C = 5862.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.040 0.960 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.012 4.012 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.074 3.926 16 N -0.223 5.223 17 C -0.053 4.053 18 C -0.053 4.053 19 N -0.277 5.277 20 N -0.085 5.085 21 C -0.116 4.116 22 C -0.094 4.094 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.191 0.809 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -7.416 -9.603 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.058 0.942 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.013 4.013 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.017 4.017 16 N -0.010 5.010 17 C -0.203 4.203 18 C -0.210 4.210 19 N -0.142 5.142 20 N -0.064 5.064 21 C -0.136 4.136 22 C -0.112 4.112 23 H 0.049 0.951 24 H 0.106 0.894 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.208 0.792 30 H 0.208 0.792 31 H 0.142 0.858 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.346 -6.055 -10.007 11.774 hybrid contribution -0.284 -1.528 1.321 2.040 sum 1.062 -7.584 -8.687 11.580 Atomic orbital electron populations 1.21807 0.97188 0.99481 1.00616 1.18004 0.93161 0.95744 0.88269 0.94228 1.21095 1.31656 1.12629 0.89669 0.92282 1.24949 0.94869 0.94927 0.99027 1.69881 1.36316 1.22740 1.23586 0.86505 0.78703 0.79753 0.82909 1.19722 1.20913 1.20911 1.20986 0.91193 0.93642 0.95436 1.21142 0.98431 1.00607 0.93195 1.20862 1.00214 0.91894 0.98641 1.17555 1.03937 0.93564 0.86601 1.44786 1.31384 1.08731 1.16063 1.23805 1.07918 0.87910 1.00620 1.23570 1.01219 0.99336 0.96844 1.75076 1.20205 0.99666 1.19279 1.78323 1.10321 1.21983 0.95730 1.20825 0.98466 0.99808 0.94533 1.21007 0.99821 0.94870 0.95533 0.95123 0.89352 0.97066 0.92808 0.85013 0.84953 0.79233 0.79208 0.85755 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.78 37.16 0.33 -2.60 16 2 C 0.07 1.51 2.48 -92.92 -0.23 1.28 16 3 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 4 C -0.51 -12.89 8.24 -34.44 -0.28 -13.18 16 5 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 8 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.01 -0.23 4.74 -104.59 -0.50 -0.73 16 13 C -0.12 -1.99 9.66 -39.61 -0.38 -2.37 16 14 C -0.10 -1.56 9.62 -39.41 -0.38 -1.94 16 15 C 0.07 1.16 6.68 -83.57 -0.56 0.61 16 16 N -0.22 -3.41 3.56 -10.47 -0.04 -3.45 16 17 C -0.05 -0.64 10.92 -16.68 -0.18 -0.83 16 18 C -0.05 -0.64 12.05 -17.73 -0.21 -0.85 16 19 N -0.28 -4.40 12.39 30.24 0.37 -4.02 16 20 N -0.08 -1.44 12.42 60.35 0.75 -0.69 16 21 C -0.12 -1.71 9.46 -39.41 -0.37 -2.08 16 22 C -0.09 -1.61 8.70 -39.61 -0.34 -1.95 16 23 H 0.03 0.63 7.38 -51.93 -0.38 0.24 16 24 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 25 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 26 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.13 2.11 7.94 -52.48 -0.42 1.69 16 28 H 0.13 2.01 7.69 -52.49 -0.40 1.61 16 29 H 0.19 1.54 7.11 -52.48 -0.37 1.16 16 30 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.42 6.77 -52.48 -0.36 1.06 16 32 H 0.14 2.32 7.57 -52.49 -0.40 1.92 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -28.53 277.68 -5.77 -34.30 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.43 Total: 0.78 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.21 Total: -23.07 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.71 Total: -31.28 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.53 -5.77 -34.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.829 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds