Wall clock time and date at job start Mon Mar 30 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46580 * 119.99651 * 2 1 3 5 5 H 1.08003 * 119.99163 * 120.00070 * 4 2 1 6 6 C 1.37876 * 120.00109 * 300.00008 * 4 2 1 7 7 N 1.31511 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99909 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46991 * 119.99849 * 8 6 4 11 11 H 1.48491 * 109.47453 * 240.00224 * 8 6 4 12 12 C 1.50694 * 109.47235 * 239.99511 * 2 1 3 13 13 C 1.38280 * 119.93501 * 120.00286 * 12 2 1 14 14 C 1.38122 * 120.06821 * 180.02562 * 13 12 2 15 15 C 1.38819 * 119.93144 * 0.02562 * 14 13 12 16 16 N 1.40254 * 120.06354 * 180.02562 * 15 14 13 17 17 C 1.36109 * 125.94575 * 179.97438 * 16 15 14 18 18 C 1.35374 * 106.05514 * 180.02562 * 17 16 15 19 19 N 1.33776 * 106.53371 * 359.97438 * 18 17 16 20 20 N 1.28607 * 109.06277 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.87268 * 0.28468 * 15 14 13 22 22 C 1.38130 * 119.93640 * 359.41741 * 21 15 14 23 23 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47476 * 300.00315 * 1 2 3 25 25 H 1.09008 * 109.46861 * 60.00306 * 1 2 3 26 26 H 0.97000 * 119.99738 * 179.97438 * 7 6 4 27 27 H 1.08005 * 119.96366 * 0.02562 * 13 12 2 28 28 H 1.07996 * 120.03235 * 180.02562 * 14 13 12 29 29 H 1.08003 * 126.97068 * 0.02562 * 17 16 15 30 30 H 1.07998 * 126.73273 * 179.97438 * 18 17 16 31 31 H 1.08008 * 120.03423 * 179.69488 * 21 15 14 32 32 H 1.07993 * 119.96762 * 180.31944 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3210 -1.1202 4.0081 9 1 3.1461 -2.2870 3.6039 10 1 3.1463 -0.1873 4.8166 11 1 1.1658 -1.5865 4.8161 12 6 2.0324 -0.7105 -1.2303 13 6 2.8273 -0.0373 -2.1397 14 6 3.2889 -0.6856 -3.2686 15 6 2.9534 -2.0143 -3.4901 16 7 3.4210 -2.6756 -4.6352 17 6 3.1674 -3.9703 -4.9696 18 6 3.8096 -4.1869 -6.1415 19 7 4.4133 -3.0372 -6.4630 20 7 4.1647 -2.1634 -5.5526 21 6 2.1499 -2.6857 -2.5787 22 6 1.6964 -2.0340 -1.4485 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7080 1.1610 3.4843 27 1 3.0876 0.9966 -1.9670 28 1 3.9100 -0.1594 -3.9782 29 1 2.5743 -4.6808 -4.4130 30 1 3.8303 -5.1073 -6.7062 31 1 1.8832 -3.7181 -2.7510 32 1 1.0755 -2.5573 -0.7365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:48 Heat of formation + Delta-G solvation = 105.012579 kcal Electronic energy + Delta-G solvation = -16385.174842 eV Core-core repulsion = 13733.245707 eV Total energy + Delta-G solvation = -2651.929135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.38551 -40.47172 -36.86746 -35.02075 -32.83070 -32.59897 -31.57839 -29.54665 -27.19832 -25.38881 -24.61816 -22.93750 -22.49843 -21.33059 -19.59450 -18.29780 -17.46191 -17.01484 -16.32007 -16.22176 -15.83359 -15.39774 -14.77546 -14.62006 -14.35233 -13.99548 -13.66799 -13.30100 -12.89800 -12.82915 -12.81300 -12.29845 -12.22558 -12.07367 -11.94688 -11.72414 -11.36532 -10.95591 -10.46969 -10.44667 -9.99160 -9.29007 -8.09574 -6.23443 -0.28386 0.36913 1.08890 1.32249 1.42177 1.46111 1.55478 1.56317 2.43439 2.80672 3.19564 3.46653 3.66533 3.87304 4.10804 4.15719 4.26688 4.34377 4.49312 4.57123 4.77116 4.83985 5.01291 5.08156 5.17160 5.23996 5.36729 5.38787 5.51145 5.61448 5.68097 5.97460 6.01977 6.10614 6.33484 6.85677 7.42724 7.45181 8.94954 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.004961 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.390899 B = 5642.410258 C = 5862.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.067 3.933 3 H 0.009 0.991 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.280 1.280 12 C -0.038 4.038 13 C -0.120 4.120 14 C -0.101 4.101 15 C 0.078 3.922 16 N -0.236 5.236 17 C -0.043 4.043 18 C -0.051 4.051 19 N -0.303 5.303 20 N -0.127 5.127 21 C -0.099 4.099 22 C -0.098 4.098 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.234 0.766 30 H 0.232 0.768 31 H 0.168 0.832 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -10.208 -10.508 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.205 1.205 12 C -0.039 4.039 13 C -0.138 4.138 14 C -0.121 4.121 15 C -0.013 4.013 16 N -0.023 5.023 17 C -0.191 4.191 18 C -0.207 4.207 19 N -0.168 5.168 20 N -0.105 5.105 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.251 0.749 30 H 0.248 0.752 31 H 0.185 0.815 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.359 -8.843 -10.928 14.124 hybrid contribution -0.257 -0.744 1.464 1.662 sum 1.102 -9.587 -9.464 13.516 Atomic orbital electron populations 1.21648 0.96884 0.99771 0.99840 1.17835 0.93511 0.94313 0.89530 0.97275 1.21394 1.31121 1.12439 0.90810 0.92548 1.25662 0.95223 0.95620 1.01700 1.70009 1.37504 1.24022 1.23983 0.85599 0.78163 0.78729 0.79737 1.19130 1.21162 1.20529 1.20698 0.93381 0.94884 0.94934 1.21121 0.98399 1.00837 0.93450 1.20907 1.00288 0.92640 0.98220 1.17690 1.03258 0.93403 0.86902 1.44864 1.31762 1.09937 1.15747 1.24636 1.06978 0.86951 1.00554 1.24341 0.99811 0.99502 0.97094 1.75039 1.21097 1.01131 1.19569 1.78332 1.12198 1.23123 0.96804 1.21084 0.96732 1.01376 0.92705 1.21030 1.00053 0.93995 0.96568 0.94172 0.92235 0.95594 0.92940 0.84954 0.84519 0.74949 0.75206 0.81484 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.78 71.98 0.63 -4.88 16 2 C 0.07 3.09 2.48 -12.29 -0.03 3.06 16 3 H 0.01 0.47 7.87 -2.39 -0.02 0.45 16 4 C -0.52 -26.40 8.24 25.60 0.21 -26.19 16 5 H 0.06 2.83 7.60 -2.91 -0.02 2.81 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -50.17 11.32 21.45 0.24 -49.93 16 8 Si 0.95 41.36 29.54 68.60 2.03 43.39 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 C -0.04 -1.47 4.74 -19.85 -0.09 -1.56 16 13 C -0.12 -4.16 9.66 22.25 0.22 -3.94 16 14 C -0.10 -3.19 9.62 22.38 0.22 -2.98 16 15 C 0.08 2.28 6.68 38.07 0.25 2.53 16 16 N -0.24 -6.58 3.56 -187.05 -0.67 -7.25 16 17 C -0.04 -0.83 10.92 83.37 0.91 0.08 16 18 C -0.05 -1.03 12.05 83.73 1.01 -0.02 16 19 N -0.30 -9.03 12.39 -58.24 -0.72 -9.75 16 20 N -0.13 -4.12 12.42 37.02 0.46 -3.66 16 21 C -0.10 -2.57 9.46 22.38 0.21 -2.36 16 22 C -0.10 -3.17 8.70 22.25 0.19 -2.98 16 23 H 0.04 1.65 7.38 -2.39 -0.02 1.63 16 24 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 25 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.13 4.42 7.94 -2.91 -0.02 4.39 16 28 H 0.14 4.15 7.69 -2.91 -0.02 4.13 16 29 H 0.23 2.24 7.11 -2.91 -0.02 2.22 16 30 H 0.23 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.17 2.85 6.77 -2.91 -0.02 2.83 16 32 H 0.14 4.44 7.57 -2.91 -0.02 4.41 16 Total: -1.00 -63.04 277.68 6.64 -56.40 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.13 Total: 8.71 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 4.18 Total: -37.91 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.68 Total: -70.58 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -63.04 6.64 -56.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.411 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds