Wall clock time and date at job start Mon Mar 30 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.50700 * 109.47074 * 239.99281 * 2 1 3 5 5 H 1.07992 * 120.00403 * 240.00196 * 4 2 1 6 6 C 1.37879 * 119.99591 * 60.00558 * 4 2 1 7 7 N 1.31516 * 120.00001 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99863 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46970 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.47126 * 209.99839 * 8 6 4 11 11 H 1.48504 * 109.47168 * 329.99969 * 8 6 4 12 12 C 1.50701 * 109.46819 * 119.99889 * 2 1 3 13 13 C 1.38282 * 119.93430 * 240.00001 * 12 2 1 14 14 C 1.38125 * 120.06295 * 179.97438 * 13 12 2 15 15 C 1.38813 * 119.93542 * 359.97438 * 14 13 12 16 16 N 1.40250 * 120.06270 * 180.02562 * 15 14 13 17 17 C 1.36123 * 125.93950 * 179.71848 * 16 15 14 18 18 C 1.35371 * 106.04707 * 179.84537 * 17 16 15 19 19 N 1.33777 * 106.53924 * 0.40839 * 18 17 16 20 20 N 1.28603 * 109.05940 * 359.73538 * 19 18 17 21 21 C 1.38816 * 119.87375 * 0.02562 * 15 14 13 22 22 C 1.38125 * 119.93358 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47508 * 300.00642 * 1 2 3 24 24 H 1.09005 * 109.47237 * 60.00420 * 1 2 3 25 25 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99737 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96526 * 0.25327 * 13 12 2 28 28 H 1.08005 * 120.02789 * 179.97438 * 14 13 12 29 29 H 1.07990 * 126.97799 * 359.97438 * 17 16 15 30 30 H 1.07997 * 126.73238 * 180.13695 * 18 17 16 31 31 H 1.08002 * 120.03243 * 179.97438 * 21 15 14 32 32 H 1.08006 * 119.96821 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.3447 -2.1618 -4.4122 10 1 2.4873 -0.1406 -5.1119 11 1 3.6308 -1.7569 -3.7118 12 6 2.0322 -0.7104 1.2305 13 6 2.8271 -0.0371 2.1399 14 6 3.2885 -0.6854 3.2689 15 6 2.9530 -2.0141 3.4904 16 7 3.4196 -2.6749 4.6361 17 6 3.1610 -3.9680 4.9736 18 6 3.8065 -4.1857 6.1435 19 7 4.4100 -3.0359 6.4651 20 7 4.1623 -2.1625 5.5542 21 6 2.1549 -2.6875 2.5758 22 6 1.6973 -2.0342 1.4480 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7082 1.1607 -3.4844 27 1 3.0837 0.9980 1.9694 28 1 3.9097 -0.1591 3.9785 29 1 2.5641 -4.6771 4.4195 30 1 3.8264 -5.1057 6.7087 31 1 1.8927 -3.7214 2.7454 32 1 1.0760 -2.5575 0.7363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:50 Heat of formation + Delta-G solvation = 120.564404 kcal Electronic energy + Delta-G solvation = -16384.312378 eV Core-core repulsion = 13733.057620 eV Total energy + Delta-G solvation = -2651.254758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.32382 -39.15829 -35.38278 -33.50203 -31.49180 -31.14661 -30.41516 -28.11590 -25.27950 -24.05143 -23.49439 -21.56426 -21.34216 -19.84066 -18.47602 -16.43445 -16.35314 -15.41409 -15.21882 -14.93450 -14.41041 -14.16815 -13.44241 -13.22482 -12.94231 -12.53891 -12.09233 -11.77067 -11.57014 -11.16740 -11.03672 -10.98753 -10.85131 -10.61918 -10.31436 -10.21528 -9.66345 -9.45633 -9.15182 -8.72960 -8.51093 -7.92886 -6.14585 -4.22781 0.89791 1.64457 2.24292 2.40794 2.56022 3.21437 3.29339 3.32329 4.09096 4.33720 4.42336 4.69793 5.00982 5.08707 5.16683 5.17087 5.39428 5.58529 5.77254 5.82026 5.95565 6.10222 6.24427 6.55106 6.62778 6.67604 6.81754 6.89298 6.98372 7.09623 7.31481 7.56148 7.76707 7.93576 8.20958 8.49252 8.79515 9.43046 10.90906 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.004961 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.048849 B = 5642.796787 C = 5862.594344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.040 0.960 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.012 4.012 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.074 3.926 16 N -0.223 5.223 17 C -0.053 4.053 18 C -0.053 4.053 19 N -0.277 5.277 20 N -0.085 5.085 21 C -0.116 4.116 22 C -0.094 4.094 23 H 0.010 0.990 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.191 0.809 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -7.403 9.596 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 H 0.058 0.942 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.013 4.013 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.017 4.017 16 N -0.010 5.010 17 C -0.203 4.203 18 C -0.210 4.210 19 N -0.142 5.142 20 N -0.064 5.064 21 C -0.136 4.136 22 C -0.112 4.112 23 H 0.029 0.971 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.208 0.792 30 H 0.208 0.792 31 H 0.142 0.858 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.340 -6.036 9.996 11.754 hybrid contribution -0.287 -1.544 -1.315 2.049 sum 1.053 -7.580 8.681 11.572 Atomic orbital electron populations 1.21808 0.97196 0.99484 1.00617 1.17998 0.93152 0.95740 0.88243 0.94229 1.21054 1.31742 1.12637 0.89682 0.92339 1.24949 0.94878 0.94910 0.99015 1.69874 1.36295 1.22674 1.23688 0.86558 0.79333 0.79426 0.82528 1.20571 1.21116 1.19852 1.20990 0.91178 0.93656 0.95436 1.21141 0.98432 1.00600 0.93197 1.20863 1.00199 0.91919 0.98630 1.17554 1.04009 0.93545 0.86554 1.44788 1.31351 1.08818 1.16010 1.23805 1.07827 0.87987 1.00636 1.23570 1.01145 0.99338 0.96915 1.75076 1.20239 0.99641 1.19270 1.78318 1.10425 1.21959 0.95649 1.20823 0.98524 0.99772 0.94507 1.21007 0.99788 0.94860 0.95586 0.97060 0.89358 0.95124 0.92752 0.85014 0.84953 0.79234 0.79210 0.85755 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.78 37.16 0.33 -2.60 16 2 C 0.07 1.52 2.48 -92.92 -0.23 1.29 16 3 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 4 C -0.51 -12.91 8.24 -34.44 -0.28 -13.19 16 5 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.76 11.32 55.43 0.63 -23.13 16 8 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 C -0.01 -0.23 4.74 -104.59 -0.50 -0.73 16 13 C -0.12 -1.99 9.66 -39.61 -0.38 -2.38 16 14 C -0.10 -1.56 9.62 -39.41 -0.38 -1.94 16 15 C 0.07 1.16 6.68 -83.58 -0.56 0.60 16 16 N -0.22 -3.41 3.56 -10.48 -0.04 -3.45 16 17 C -0.05 -0.64 10.92 -16.67 -0.18 -0.83 16 18 C -0.05 -0.64 12.05 -17.73 -0.21 -0.85 16 19 N -0.28 -4.40 12.39 30.24 0.37 -4.02 16 20 N -0.08 -1.44 12.42 60.35 0.75 -0.69 16 21 C -0.12 -1.71 9.46 -39.41 -0.37 -2.08 16 22 C -0.09 -1.61 8.70 -39.61 -0.34 -1.95 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 25 H 0.03 0.63 7.38 -51.93 -0.38 0.25 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.13 2.11 7.94 -52.49 -0.42 1.69 16 28 H 0.13 2.01 7.69 -52.48 -0.40 1.61 16 29 H 0.19 1.54 7.11 -52.49 -0.37 1.16 16 30 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.42 6.77 -52.49 -0.36 1.06 16 32 H 0.14 2.32 7.57 -52.48 -0.40 1.92 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -28.51 277.68 -5.77 -34.28 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.43 Total: 0.81 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.21 Total: -23.08 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 1.71 Total: -31.29 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.51 -5.77 -34.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.844 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds