Wall clock time and date at job start Mon Mar 30 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.50700 * 109.47074 * 239.99281 * 2 1 3 5 5 H 1.07992 * 120.00403 * 240.00196 * 4 2 1 6 6 C 1.37879 * 119.99591 * 60.00558 * 4 2 1 7 7 N 1.31516 * 120.00001 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99863 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46970 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.47126 * 209.99839 * 8 6 4 11 11 H 1.48504 * 109.47168 * 329.99969 * 8 6 4 12 12 C 1.50701 * 109.46819 * 119.99889 * 2 1 3 13 13 C 1.38282 * 119.93430 * 240.00001 * 12 2 1 14 14 C 1.38125 * 120.06295 * 179.97438 * 13 12 2 15 15 C 1.38813 * 119.93542 * 359.97438 * 14 13 12 16 16 N 1.40250 * 120.06270 * 180.02562 * 15 14 13 17 17 C 1.36123 * 125.93950 * 179.71848 * 16 15 14 18 18 C 1.35371 * 106.04707 * 179.84537 * 17 16 15 19 19 N 1.33777 * 106.53924 * 0.40839 * 18 17 16 20 20 N 1.28603 * 109.05940 * 359.73538 * 19 18 17 21 21 C 1.38816 * 119.87375 * 0.02562 * 15 14 13 22 22 C 1.38125 * 119.93358 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47508 * 300.00642 * 1 2 3 24 24 H 1.09005 * 109.47237 * 60.00420 * 1 2 3 25 25 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99737 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96526 * 0.25327 * 13 12 2 28 28 H 1.08005 * 120.02789 * 179.97438 * 14 13 12 29 29 H 1.07990 * 126.97799 * 359.97438 * 17 16 15 30 30 H 1.07997 * 126.73238 * 180.13695 * 18 17 16 31 31 H 1.08002 * 120.03243 * 179.97438 * 21 15 14 32 32 H 1.08006 * 119.96821 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.3447 -2.1618 -4.4122 10 1 2.4873 -0.1406 -5.1119 11 1 3.6308 -1.7569 -3.7118 12 6 2.0322 -0.7104 1.2305 13 6 2.8271 -0.0371 2.1399 14 6 3.2885 -0.6854 3.2689 15 6 2.9530 -2.0141 3.4904 16 7 3.4196 -2.6749 4.6361 17 6 3.1610 -3.9680 4.9736 18 6 3.8065 -4.1857 6.1435 19 7 4.4100 -3.0359 6.4651 20 7 4.1623 -2.1625 5.5542 21 6 2.1549 -2.6875 2.5758 22 6 1.6973 -2.0342 1.4480 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7082 1.1607 -3.4844 27 1 3.0837 0.9980 1.9694 28 1 3.9097 -0.1591 3.9785 29 1 2.5641 -4.6771 4.4195 30 1 3.8264 -5.1057 6.7087 31 1 1.8927 -3.7214 2.7454 32 1 1.0760 -2.5575 0.7363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:50 Heat of formation + Delta-G solvation = 105.062919 kcal Electronic energy + Delta-G solvation = -16384.984572 eV Core-core repulsion = 13733.057620 eV Total energy + Delta-G solvation = -2651.926952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.38598 -40.47154 -36.86694 -35.01997 -32.82950 -32.59945 -31.57865 -29.54651 -27.19586 -25.38838 -24.61829 -22.93670 -22.49869 -21.32996 -19.59453 -18.29413 -17.46204 -17.01308 -16.32028 -16.22262 -15.83625 -15.39733 -14.77551 -14.61725 -14.34829 -13.99710 -13.66752 -13.29943 -12.90227 -12.81866 -12.79112 -12.32831 -12.22239 -12.07198 -11.95554 -11.72143 -11.36118 -10.96448 -10.46208 -10.44685 -9.99159 -9.28992 -8.09328 -6.23297 -0.28381 0.36931 1.08891 1.32252 1.43398 1.46113 1.54506 1.56313 2.43592 2.80704 3.19670 3.46622 3.66586 3.87298 4.10835 4.15743 4.26721 4.34380 4.49315 4.57121 4.77113 4.84023 5.01332 5.08089 5.17150 5.24022 5.36735 5.38801 5.51102 5.61446 5.68030 5.97500 6.01991 6.10643 6.33538 6.85592 7.42752 7.45252 8.94978 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.004961 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.048849 B = 5642.796787 C = 5862.594344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.067 3.933 3 H 0.009 0.991 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.038 4.038 13 C -0.120 4.120 14 C -0.101 4.101 15 C 0.078 3.922 16 N -0.236 5.236 17 C -0.043 4.043 18 C -0.051 4.051 19 N -0.303 5.303 20 N -0.127 5.127 21 C -0.099 4.099 22 C -0.098 4.098 23 H 0.025 0.975 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.261 0.739 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.234 0.766 30 H 0.232 0.768 31 H 0.168 0.832 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -10.207 10.493 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.039 4.039 13 C -0.138 4.138 14 C -0.121 4.121 15 C -0.013 4.013 16 N -0.023 5.023 17 C -0.191 4.191 18 C -0.208 4.208 19 N -0.168 5.168 20 N -0.105 5.105 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.251 0.749 30 H 0.248 0.752 31 H 0.185 0.815 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.342 -8.837 10.910 14.104 hybrid contribution -0.256 -0.756 -1.456 1.660 sum 1.086 -9.593 9.454 13.513 Atomic orbital electron populations 1.21649 0.96893 0.99765 0.99844 1.17829 0.93501 0.94308 0.89513 0.97282 1.21361 1.31214 1.12466 0.90819 0.92555 1.25665 0.95228 0.95599 1.01695 1.70006 1.37497 1.23966 1.24039 0.85651 0.78886 0.78394 0.79304 1.19816 1.21339 1.19599 1.20702 0.93366 0.94902 0.94935 1.21121 0.98407 1.00830 0.93456 1.20908 1.00277 0.92668 0.98209 1.17689 1.03320 0.93383 0.86863 1.44866 1.31733 1.10020 1.15696 1.24637 1.06899 0.87019 1.00556 1.24341 0.99742 0.99504 0.97165 1.75040 1.21128 1.01109 1.19560 1.78328 1.12309 1.23099 0.96720 1.21084 0.96776 1.01352 0.92678 1.21030 1.00019 0.93979 0.96616 0.95587 0.92236 0.94186 0.92934 0.84960 0.84524 0.74945 0.75209 0.81477 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.78 71.98 0.63 -4.88 16 2 C 0.07 3.11 2.48 -12.29 -0.03 3.08 16 3 H 0.01 0.46 7.87 -2.39 -0.02 0.45 16 4 C -0.52 -26.45 8.24 25.60 0.21 -26.24 16 5 H 0.06 2.82 7.60 -2.91 -0.02 2.80 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -50.19 11.32 21.45 0.24 -49.95 16 8 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 C -0.04 -1.47 4.74 -19.84 -0.09 -1.56 16 13 C -0.12 -4.16 9.66 22.25 0.22 -3.95 16 14 C -0.10 -3.20 9.62 22.38 0.22 -2.98 16 15 C 0.08 2.28 6.68 38.07 0.25 2.53 16 16 N -0.24 -6.58 3.56 -187.06 -0.67 -7.25 16 17 C -0.04 -0.83 10.92 83.36 0.91 0.08 16 18 C -0.05 -1.03 12.05 83.73 1.01 -0.02 16 19 N -0.30 -9.03 12.39 -58.24 -0.72 -9.75 16 20 N -0.13 -4.12 12.42 37.02 0.46 -3.66 16 21 C -0.10 -2.57 9.46 22.38 0.21 -2.36 16 22 C -0.10 -3.17 8.70 22.25 0.19 -2.98 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 2.99 6.07 -2.38 -0.01 2.98 16 25 H 0.04 1.65 7.38 -2.39 -0.02 1.63 16 26 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.13 4.42 7.94 -2.91 -0.02 4.39 16 28 H 0.14 4.15 7.69 -2.91 -0.02 4.13 16 29 H 0.23 2.24 7.11 -2.92 -0.02 2.22 16 30 H 0.23 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.17 2.84 6.77 -2.91 -0.02 2.82 16 32 H 0.14 4.43 7.57 -2.91 -0.02 4.41 16 Total: -1.00 -63.02 277.68 6.64 -56.38 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.13 Total: 8.80 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.18 Total: -37.94 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -0.68 Total: -70.61 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -63.02 6.64 -56.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.440 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds