Wall clock time and date at job start Mon Mar 30 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37792 * 119.66829 * 2 1 4 4 C 1.39082 * 119.78168 * 180.02562 * 3 2 1 5 5 N 1.37691 * 133.51654 * 180.02562 * 4 3 2 6 6 H 0.97003 * 125.06208 * 0.02562 * 5 4 3 7 7 C 1.36829 * 109.87351 * 179.73433 * 5 4 3 8 8 C 1.34229 * 109.94177 * 0.44908 * 7 5 4 9 9 C 1.50701 * 126.50421 * 179.82969 * 8 7 5 10 10 C 1.52997 * 109.47212 * 264.68744 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46616 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47104 * 119.99966 * 15 13 11 18 18 H 1.48489 * 109.47200 * 240.00246 * 15 13 11 19 19 C 1.40706 * 119.32946 * 0.02562 * 4 3 2 20 20 C 1.39585 * 119.93099 * 359.97438 * 19 4 3 21 21 C 1.50706 * 120.11703 * 179.97438 * 20 19 4 22 22 C 1.36658 * 119.76695 * 359.97438 * 20 19 4 23 23 H 1.08996 * 109.47439 * 269.97879 * 1 2 3 24 24 H 1.09003 * 109.47023 * 29.98695 * 1 2 3 25 25 H 1.09006 * 109.46881 * 149.97620 * 1 2 3 26 26 H 1.08007 * 120.10858 * 359.97438 * 3 2 1 27 27 H 1.08007 * 125.03202 * 180.28077 * 7 5 4 28 28 H 1.09002 * 109.47060 * 24.68799 * 9 8 7 29 29 H 1.09001 * 109.47380 * 144.68886 * 9 8 7 30 30 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 31 31 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 32 32 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47092 * 89.99768 * 21 20 19 34 34 H 1.08998 * 109.47058 * 210.00154 * 21 20 19 35 35 H 1.09002 * 109.46888 * 329.99866 * 21 20 19 36 36 H 1.08005 * 119.73671 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.2000 -0.0005 5 7 4.5259 2.2004 -0.0002 6 1 4.3320 3.1508 0.0008 7 6 5.7804 1.6542 0.0049 8 6 5.6965 0.3145 -0.0019 9 6 6.8494 -0.6560 -0.0030 10 6 7.1581 -1.0796 -1.4404 11 6 8.3113 -2.0497 -1.4416 12 1 8.7773 -2.3357 -0.5102 13 6 8.7710 -2.5728 -2.6315 14 7 8.2033 -2.2247 -3.7657 15 14 10.2011 -3.7746 -2.6331 16 1 10.6594 -4.0002 -1.2388 17 1 9.7630 -5.0644 -3.2245 18 1 11.3170 -3.2150 -3.4371 19 6 4.2715 -0.0253 -0.0016 20 6 3.5604 -1.2264 -0.0016 21 6 4.2969 -2.5413 -0.0034 22 6 2.1939 -1.2060 0.0000 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6453 2.1305 -0.0004 27 1 6.7019 2.2175 0.0105 28 1 7.7273 -0.1777 0.4313 29 1 6.5855 -1.5344 0.5859 30 1 6.2801 -1.5579 -1.8747 31 1 7.4220 -0.2013 -2.0294 32 1 8.5264 -2.5930 -4.6029 33 1 4.4757 -2.8589 1.0238 34 1 3.6974 -3.2928 -0.5170 35 1 5.2503 -2.4229 -0.5183 36 1 1.6442 -2.1356 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:14 Heat of formation + Delta-G solvation = 28.171676 kcal Electronic energy + Delta-G solvation = -16868.900688 eV Core-core repulsion = 14317.179824 eV Total energy + Delta-G solvation = -2551.720863 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89998 -37.18741 -34.46223 -32.94052 -31.57392 -29.95836 -28.77098 -26.84507 -25.74798 -24.47845 -21.67642 -21.17310 -20.44019 -18.40831 -17.10892 -16.16210 -15.83381 -14.85272 -14.47611 -14.22927 -14.06121 -13.27262 -13.21729 -12.97191 -12.63344 -12.53770 -12.11196 -11.99687 -11.90374 -11.59830 -11.06000 -10.94704 -10.75326 -10.61278 -10.50060 -10.35850 -9.66331 -9.65255 -8.99930 -8.71860 -8.28585 -7.75012 -7.01497 -5.93573 -3.96286 1.49075 1.99253 3.19965 3.34382 3.42042 3.46100 3.51026 4.22052 4.51142 5.01380 5.11692 5.27614 5.38425 5.41836 5.54152 5.65772 5.66694 5.77073 5.89949 6.02119 6.09699 6.13884 6.20107 6.30674 6.46619 6.70644 6.72538 6.81695 6.92113 7.03214 7.15221 7.19104 7.37513 7.60481 7.79889 7.90922 7.97670 8.10285 8.48873 9.12059 9.67554 11.17249 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.005631 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.731448 B = 4970.916738 C = 5462.466866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.068 4.068 3 C -0.149 4.149 4 C 0.102 3.898 5 N -0.601 5.601 6 H 0.409 0.591 7 C 0.021 3.979 8 C -0.131 4.131 9 C -0.049 4.049 10 C 0.029 3.971 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.106 4.106 20 C -0.015 4.015 21 C -0.131 4.131 22 C -0.162 4.162 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.165 0.835 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 6.581 8.291 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.069 4.069 3 C -0.170 4.170 4 C -0.006 4.006 5 N -0.204 5.204 6 H 0.245 0.755 7 C -0.102 4.102 8 C -0.138 4.138 9 C -0.087 4.087 10 C -0.008 4.008 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.111 4.111 20 C -0.015 4.015 21 C -0.188 4.188 22 C -0.182 4.182 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.183 0.817 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.977 6.680 8.102 15.928 hybrid contribution 0.716 -0.047 -0.242 0.757 sum -11.261 6.633 7.860 15.251 Atomic orbital electron populations 1.20712 0.91571 1.02317 1.01762 1.19408 0.95209 0.92348 0.99913 1.19670 0.89861 0.97661 1.09802 1.18197 0.90559 0.88279 1.03576 1.41616 1.04765 1.07357 1.66705 0.75542 1.21547 0.87142 0.93960 1.07567 1.20806 0.93061 0.93430 1.06467 1.20274 0.91993 0.95249 1.01204 1.19098 0.96294 0.96073 0.89321 1.21332 1.16016 1.25729 0.92679 0.92601 1.25013 0.96894 0.96743 0.95716 1.69995 1.41509 1.44261 0.97618 0.86592 0.82598 0.81114 0.78037 1.19721 1.21079 1.21135 1.19031 0.93051 0.91770 1.07201 1.19165 0.92908 0.94097 0.95374 1.21085 1.02425 0.93077 1.02174 1.20322 0.93315 0.97028 1.07492 0.91649 0.92072 0.91695 0.87044 0.81750 0.92708 0.92136 0.96177 0.96760 0.93158 0.91578 0.92115 0.88392 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.99 36.00 0.36 -0.75 16 2 C -0.07 -0.96 5.88 -104.58 -0.61 -1.57 16 3 C -0.15 -2.18 9.71 -39.43 -0.38 -2.57 16 4 C 0.10 1.70 7.28 -83.99 -0.61 1.09 16 5 N -0.60 -8.77 6.07 -10.65 -0.06 -8.84 16 6 H 0.41 4.37 8.96 -40.82 -0.37 4.00 16 7 C 0.02 0.35 11.73 -16.73 -0.20 0.15 16 8 C -0.13 -2.55 5.56 -102.71 -0.57 -3.12 16 9 C -0.05 -1.05 4.75 -27.88 -0.13 -1.18 16 10 C 0.03 0.76 4.54 -27.89 -0.13 0.64 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.11 -2.02 6.14 -105.14 -0.65 -2.66 16 20 C -0.01 -0.27 5.87 -104.69 -0.61 -0.88 16 21 C -0.13 -2.29 9.19 36.01 0.33 -1.96 16 22 C -0.16 -2.53 9.26 -39.95 -0.37 -2.90 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 27 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.26 6.60 -51.93 -0.34 0.92 16 30 H 0.02 0.56 6.79 -51.93 -0.35 0.21 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.10 2.02 4.22 -51.93 -0.22 1.80 16 36 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -32.10 298.30 -8.88 -40.98 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.04 Total: 2.24 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -3.99 Total: -29.12 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.67 Total: -35.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.10 -8.88 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.148 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds