Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.39117 * 126.25198 * 2 1 4 4 C 1.39924 * 125.70088 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00085 * 122.10035 * 4 3 2 6 6 C 1.40186 * 119.99779 * 302.10972 * 4 3 2 7 7 N 1.30750 * 119.99963 * 183.95848 * 6 4 3 8 8 Si 1.86800 * 120.00068 * 3.95183 * 6 4 3 9 9 H 1.48498 * 109.46905 * 96.11969 * 8 6 4 10 10 H 1.48499 * 109.47281 * 216.12314 * 8 6 4 11 11 H 1.48506 * 109.47094 * 336.12174 * 8 6 4 12 12 N 1.38318 * 108.60928 * 180.02562 * 3 2 1 13 13 C 1.46498 * 125.60392 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47421 * 119.97655 * 13 12 3 15 15 C 1.53004 * 109.46900 * 239.97856 * 13 12 3 16 16 C 1.38039 * 108.79222 * 0.02562 * 12 3 2 17 17 C 1.38940 * 132.79842 * 179.97438 * 16 12 3 18 18 C 1.37962 * 119.89323 * 179.97438 * 17 16 12 19 19 C 1.38942 * 120.69726 * 0.02562 * 18 17 16 20 20 C 1.36427 * 120.59657 * 359.97438 * 19 18 17 21 21 C 1.40484 * 119.79990 * 0.27345 * 20 19 18 22 22 H 1.09001 * 109.46768 * 86.22793 * 1 2 3 23 23 H 1.08998 * 109.46828 * 206.23230 * 1 2 3 24 24 H 1.08999 * 109.46677 * 326.23009 * 1 2 3 25 25 H 0.97006 * 119.99469 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47225 * 359.97348 * 13 12 3 27 27 H 1.09000 * 109.46692 * 59.99886 * 14 13 12 28 28 H 1.09000 * 109.46905 * 180.02562 * 14 13 12 29 29 H 1.08994 * 109.46933 * 299.99847 * 14 13 12 30 30 H 1.08998 * 109.46871 * 180.02562 * 15 13 12 31 31 H 1.08999 * 109.46767 * 299.99773 * 15 13 12 32 32 H 1.08991 * 109.47386 * 59.99574 * 15 13 12 33 33 H 1.08002 * 120.05071 * 0.02931 * 17 16 12 34 34 H 1.07992 * 119.64896 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.69610 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.10165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3297 1.1219 0.0000 4 6 1.8963 2.4523 0.0005 5 1 2.2018 3.1195 0.7929 6 6 1.0652 2.9190 -1.0274 7 7 0.7231 4.1803 -1.0697 8 14 0.4466 1.7391 -2.3369 9 1 -0.9106 1.2606 -1.9706 10 1 0.3886 2.4383 -3.6457 11 1 1.3703 0.5804 -2.4352 12 7 3.6479 0.7027 -0.0006 13 6 4.8216 1.5793 -0.0002 14 6 5.6619 1.3062 1.2489 15 6 5.6618 1.3070 -1.2496 16 6 3.6756 -0.6775 -0.0015 17 6 4.7138 -1.6008 -0.0029 18 6 4.4327 -2.9515 -0.0031 19 6 3.1185 -3.4025 -0.0025 20 6 2.0805 -2.5172 -0.0012 21 6 2.3404 -1.1366 -0.0062 22 1 -0.3633 0.0676 -1.0255 23 1 -0.3633 -0.9218 0.4542 24 1 -0.3633 0.8543 0.5712 25 1 0.1483 4.5033 -1.7813 26 1 4.4978 2.6201 0.0001 27 1 5.9857 0.2654 1.2485 28 1 6.5349 1.9587 1.2493 29 1 5.0633 1.5002 2.1389 30 1 6.5354 1.9589 -1.2492 31 1 5.9856 0.2662 -1.2500 32 1 5.0633 1.5015 -2.1395 33 1 5.7392 -1.2617 -0.0029 34 1 5.2427 -3.6657 -0.0037 35 1 2.9170 -4.4636 -0.0031 36 1 1.0621 -2.8765 -0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = 45.343214 kcal Electronic energy + Delta-G solvation = -17883.311405 eV Core-core repulsion = 15332.335155 eV Total energy + Delta-G solvation = -2550.976250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37443 -36.41848 -34.83597 -33.07012 -31.04384 -29.21795 -29.11307 -26.90982 -26.42073 -24.44338 -22.02097 -20.89137 -19.32550 -18.86356 -17.13091 -15.82252 -15.64163 -14.96009 -14.12247 -14.02777 -13.79002 -13.42207 -13.24050 -12.79023 -12.67831 -12.25212 -12.10020 -11.86993 -11.59873 -11.48006 -11.25798 -11.08062 -11.03611 -10.60816 -10.29294 -10.08045 -9.94307 -9.82826 -9.75019 -9.01555 -8.53747 -7.13139 -6.74478 -6.32134 -4.59607 2.01946 2.53492 3.12707 3.24258 3.42362 3.77330 3.79407 4.11488 4.78693 4.91765 5.17497 5.47102 5.50715 5.58029 5.70411 5.82033 5.84422 5.97030 6.03003 6.14498 6.20594 6.28349 6.32763 6.54020 6.57134 6.60646 6.62313 6.72187 6.88157 7.04282 7.07648 7.17144 7.36067 7.58169 7.76574 7.81647 8.10299 8.31755 8.47405 8.73233 8.94535 10.30010 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.011699 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.094064 B = 2392.868085 C = 3264.976143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.289 4.289 3 C 0.276 3.724 4 C -0.488 4.488 5 H 0.092 0.908 6 C 0.106 3.894 7 N -0.836 5.836 8 Si 0.890 3.110 9 H -0.258 1.258 10 H -0.297 1.297 11 H -0.242 1.242 12 N -0.487 5.487 13 C 0.137 3.863 14 C -0.163 4.163 15 C -0.161 4.161 16 C 0.062 3.938 17 C -0.119 4.119 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.113 4.113 21 C -0.053 4.053 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.282 0.718 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -6.438 0.203 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.294 4.294 3 C 0.169 3.831 4 C -0.523 4.523 5 H 0.110 0.890 6 C -0.110 4.110 7 N -0.464 5.464 8 Si 0.717 3.283 9 H -0.184 1.184 10 H -0.225 1.225 11 H -0.165 1.165 12 N -0.172 5.172 13 C 0.035 3.965 14 C -0.221 4.221 15 C -0.219 4.219 16 C -0.043 4.043 17 C -0.139 4.139 18 C -0.175 4.175 19 C -0.166 4.166 20 C -0.132 4.132 21 C -0.058 4.058 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.035 -6.016 0.127 8.523 hybrid contribution -0.235 -0.390 -0.579 0.737 sum 5.800 -6.406 -0.452 8.653 Atomic orbital electron populations 1.20167 0.91707 1.00648 1.00121 1.19551 0.94085 0.90578 1.25141 1.18132 0.80024 0.93836 0.91064 1.18128 1.29663 0.93536 1.10934 0.88997 1.25621 0.92884 0.95118 0.97363 1.69529 1.30052 1.14804 1.32061 0.86788 0.81482 0.81346 0.78655 1.18365 1.22489 1.16490 1.45474 1.06089 1.02980 1.62679 1.21036 0.84842 0.95997 0.94651 1.22205 0.99721 1.02077 0.98069 1.22160 0.99607 1.01983 0.98115 1.18244 0.94923 0.83592 1.07557 1.19954 0.95987 0.92095 1.05913 1.20434 0.95993 0.94031 1.07076 1.20277 0.92826 0.98039 1.05467 1.20229 0.97962 0.91527 1.03458 1.18083 0.92421 0.92833 1.02419 0.93942 0.93772 0.92075 0.90783 0.87693 0.92227 0.91782 0.92209 0.91755 0.92279 0.92046 0.87807 0.87671 0.87894 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 8.47 36.01 0.30 -1.24 16 2 C -0.29 -6.99 4.53 -103.27 -0.47 -7.46 16 3 C 0.28 6.85 5.33 -83.98 -0.45 6.41 16 4 C -0.49 -12.83 8.56 -38.22 -0.33 -13.16 16 5 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 6 C 0.11 2.79 5.50 -17.28 -0.09 2.69 16 7 N -0.84 -22.44 13.92 55.56 0.77 -21.67 16 8 Si 0.89 21.07 23.46 -169.99 -3.99 17.08 16 9 H -0.26 -5.80 5.97 56.52 0.34 -5.47 16 10 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.24 -6.04 6.28 56.52 0.35 -5.69 16 12 N -0.49 -10.82 2.70 -104.47 -0.28 -11.10 16 13 C 0.14 2.53 3.45 -67.93 -0.23 2.30 16 14 C -0.16 -2.53 9.23 37.16 0.34 -2.18 16 15 C -0.16 -2.57 9.23 37.16 0.34 -2.23 16 16 C 0.06 1.35 6.19 -83.69 -0.52 0.83 16 17 C -0.12 -2.24 8.53 -39.42 -0.34 -2.58 16 18 C -0.16 -2.74 10.02 -39.42 -0.40 -3.13 16 19 C -0.15 -2.63 9.97 -39.97 -0.40 -3.03 16 20 C -0.11 -2.28 10.07 -39.39 -0.40 -2.68 16 21 C -0.05 -1.21 6.09 -106.91 -0.65 -1.86 16 22 H 0.04 0.94 3.86 -51.93 -0.20 0.74 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.37 8.00 -51.93 -0.42 0.95 16 25 H 0.28 6.98 8.29 -40.82 -0.34 6.64 16 26 H 0.11 2.06 7.29 -51.93 -0.38 1.68 16 27 H 0.06 0.91 6.08 -51.93 -0.32 0.59 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.92 6.07 -51.93 -0.32 0.60 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.72 5.71 -52.49 -0.30 1.42 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -27.99 282.87 -7.49 -35.47 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.98 Total: 3.27 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.28 Total: -27.31 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.49 Total: -32.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.99 Total: 17.08 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.99 -7.49 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.815 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds