Wall clock time and date at job start Mon Mar 30 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36661 * 119.73503 * 2 1 4 4 C 1.39596 * 119.76460 * 180.02562 * 3 2 1 5 5 C 1.46487 * 134.03175 * 179.97438 * 4 3 2 6 6 C 1.50690 * 126.50555 * 359.97438 * 5 4 3 7 7 C 1.52998 * 109.47134 * 84.99926 * 6 5 4 8 8 C 1.50706 * 109.47333 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99645 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00244 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00092 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00075 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46975 * 90.00673 * 12 10 8 14 14 H 1.48501 * 109.47284 * 210.00417 * 12 10 8 15 15 H 1.48498 * 109.47201 * 330.00497 * 12 10 8 16 16 C 1.34238 * 106.99560 * 180.02562 * 5 4 3 17 17 N 1.36835 * 109.93951 * 359.97438 * 16 5 4 18 18 H 0.96996 * 125.06532 * 180.02562 * 17 16 5 19 19 C 1.37696 * 109.87582 * 359.76536 * 17 16 5 20 20 C 1.39078 * 133.51622 * 179.56011 * 19 17 16 21 21 C 1.50703 * 120.10979 * 0.67342 * 20 19 17 22 22 C 1.37793 * 119.78020 * 180.39338 * 20 19 17 23 23 H 1.08999 * 109.47012 * 269.98250 * 1 2 3 24 24 H 1.08997 * 109.47194 * 29.98562 * 1 2 3 25 25 H 1.09004 * 109.46903 * 149.97873 * 1 2 3 26 26 H 1.08001 * 120.11851 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47581 * 205.00330 * 6 5 4 28 28 H 1.09003 * 109.47175 * 325.00047 * 6 5 4 29 29 H 1.08997 * 109.47344 * 299.99915 * 7 6 5 30 30 H 1.08998 * 109.47651 * 60.00630 * 7 6 5 31 31 H 0.96992 * 119.99828 * 179.97438 * 11 10 8 32 32 H 1.07999 * 125.03114 * 179.97438 * 16 5 4 33 33 H 1.09002 * 109.47152 * 269.71987 * 21 20 19 34 34 H 1.09001 * 109.46980 * 149.72088 * 21 20 19 35 35 H 1.09004 * 109.47113 * 29.72068 * 21 20 19 36 36 H 1.07993 * 119.66475 * 180.23499 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5808 1.1874 -0.0005 5 6 4.5984 2.2411 -0.0012 6 6 4.3499 3.7274 -0.0020 7 6 4.1419 4.2104 1.4348 8 6 3.8927 5.6967 1.4340 9 1 3.8832 6.2421 0.5019 10 6 3.6758 6.3600 2.6231 11 7 3.6869 5.6958 3.7581 12 14 3.3677 8.2025 2.6221 13 1 1.9104 8.4605 2.4994 14 1 3.8691 8.7889 3.8909 15 1 4.0785 8.8226 1.4752 16 6 5.7944 1.6315 -0.0021 17 7 5.6261 0.2736 -0.0015 18 1 6.3454 -0.3771 -0.0016 19 6 4.2834 -0.0317 0.0051 20 6 3.5732 -1.2274 0.0007 21 6 4.3079 -2.5432 0.0010 22 6 2.1954 -1.2051 0.0019 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6424 2.1206 -0.0004 27 1 5.2085 4.2392 -0.4366 28 1 3.4596 3.9466 -0.5915 29 1 3.2832 3.6987 1.8694 30 1 5.0321 3.9913 2.0243 31 1 3.5346 6.1625 4.5946 32 1 6.7483 2.1379 -0.0031 33 1 4.4842 -2.8612 -1.0266 34 1 3.7084 -3.2940 0.5159 35 1 5.2626 -2.4261 0.5140 36 1 1.6458 -2.1347 0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:32 Heat of formation + Delta-G solvation = 26.282533 kcal Electronic energy + Delta-G solvation = -16655.470693 eV Core-core repulsion = 14103.667910 eV Total energy + Delta-G solvation = -2551.802783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92958 -37.19226 -34.26093 -33.08860 -31.69066 -30.38779 -28.13049 -27.06538 -25.84553 -24.70750 -21.65114 -21.17383 -20.52833 -18.22956 -17.45671 -16.13139 -15.81250 -14.80138 -14.50751 -14.32315 -13.88524 -13.27980 -13.14146 -13.05649 -12.96551 -12.55776 -12.42650 -12.01151 -11.97054 -11.65799 -11.16879 -11.01743 -10.85603 -10.68439 -10.61796 -10.41359 -9.67368 -9.64470 -9.01809 -8.78178 -8.27104 -7.71485 -7.04196 -5.92130 -3.94819 1.47469 1.95450 3.18025 3.36261 3.42284 3.45708 3.50324 4.20404 4.52123 4.92467 5.06886 5.14028 5.35892 5.42144 5.43150 5.55821 5.59272 5.66027 5.80949 5.86035 5.89486 6.02582 6.05914 6.26120 6.38950 6.47294 6.63856 6.80562 6.88505 7.02052 7.10434 7.18019 7.35838 7.57981 7.79211 7.90312 7.98726 8.10725 8.50633 9.13219 9.68726 11.18838 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028071 B = 0.005461 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.213548 B = 5125.626458 C = 5748.311956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.123 4.123 3 C -0.061 4.061 4 C -0.094 4.094 5 C -0.135 4.135 6 C -0.045 4.045 7 C 0.030 3.970 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.026 3.974 17 N -0.600 5.600 18 H 0.408 0.592 19 C 0.094 3.906 20 C -0.106 4.106 21 C -0.105 4.105 22 C -0.103 4.103 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.166 0.834 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -14.965 -8.315 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.080 4.080 4 C -0.099 4.099 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.007 4.007 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.535 5.535 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.098 4.098 17 N -0.203 5.203 18 H 0.244 0.756 19 C -0.013 4.013 20 C -0.109 4.109 21 C -0.162 4.162 22 C -0.122 4.122 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.183 0.817 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.261 -14.981 -8.129 17.046 hybrid contribution 0.273 0.748 0.269 0.840 sum 0.534 -14.233 -7.860 16.268 Atomic orbital electron populations 1.20673 0.91567 1.02025 1.01884 1.19268 0.95697 0.92735 1.04771 1.20233 0.92075 0.97715 0.97955 1.19161 0.93178 0.92025 1.05550 1.20832 0.90523 0.96028 1.06772 1.20170 1.00340 0.86672 1.01122 1.19051 0.97161 0.95110 0.89350 1.21303 1.48279 0.93554 0.92660 0.92674 1.25019 0.95596 0.98106 0.95695 1.69984 1.50194 1.35683 0.97618 0.86632 0.78431 0.85823 0.77331 1.20699 1.21322 1.19888 1.21570 0.99449 0.81646 1.07120 1.41596 1.05241 1.06820 1.66635 0.75609 1.18041 0.83725 0.94657 1.04882 1.18718 0.93280 0.91845 1.07041 1.20626 0.99551 0.94451 1.01579 1.20450 0.92169 0.97234 1.02366 0.91732 0.91835 0.92302 0.85890 0.92630 0.92571 0.96513 0.96752 0.93112 0.81690 0.91846 0.91565 0.92684 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.99 36.01 0.36 -0.91 16 2 C -0.12 -1.88 5.85 -104.99 -0.61 -2.50 16 3 C -0.06 -1.10 9.67 -39.64 -0.38 -1.48 16 4 C -0.09 -1.79 6.35 -105.14 -0.67 -2.46 16 5 C -0.13 -2.64 5.57 -102.72 -0.57 -3.21 16 6 C -0.04 -0.98 5.68 -27.89 -0.16 -1.14 16 7 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 8 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 9 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 12 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.03 0.42 11.73 -16.73 -0.20 0.23 16 17 N -0.60 -8.67 6.07 -10.65 -0.06 -8.74 16 18 H 0.41 4.37 8.87 -40.82 -0.36 4.01 16 19 C 0.09 1.56 6.95 -83.99 -0.58 0.98 16 20 C -0.11 -1.52 5.89 -104.47 -0.62 -2.13 16 21 C -0.11 -1.10 10.02 36.01 0.36 -0.74 16 22 C -0.10 -1.45 9.32 -39.54 -0.37 -1.81 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.05 0.53 7.99 -51.93 -0.41 0.12 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -32.70 306.94 -9.09 -41.79 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.38 Total: 0.45 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -3.99 Total: -28.22 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.67 Total: -35.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.70 -9.09 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.072 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds