Wall clock time and date at job start Mon Mar 30 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36661 * 119.73503 * 2 1 4 4 C 1.39596 * 119.76460 * 180.02562 * 3 2 1 5 5 C 1.46487 * 134.03175 * 179.97438 * 4 3 2 6 6 C 1.50690 * 126.50555 * 359.97438 * 5 4 3 7 7 C 1.52998 * 109.47134 * 84.99926 * 6 5 4 8 8 C 1.50706 * 109.47333 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99645 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00244 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00092 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00075 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46975 * 90.00673 * 12 10 8 14 14 H 1.48501 * 109.47284 * 210.00417 * 12 10 8 15 15 H 1.48498 * 109.47201 * 330.00497 * 12 10 8 16 16 C 1.34238 * 106.99560 * 180.02562 * 5 4 3 17 17 N 1.36835 * 109.93951 * 359.97438 * 16 5 4 18 18 H 0.96996 * 125.06532 * 180.02562 * 17 16 5 19 19 C 1.37696 * 109.87582 * 359.76536 * 17 16 5 20 20 C 1.39078 * 133.51622 * 179.56011 * 19 17 16 21 21 C 1.50703 * 120.10979 * 0.67342 * 20 19 17 22 22 C 1.37793 * 119.78020 * 180.39338 * 20 19 17 23 23 H 1.08999 * 109.47012 * 269.98250 * 1 2 3 24 24 H 1.08997 * 109.47194 * 29.98562 * 1 2 3 25 25 H 1.09004 * 109.46903 * 149.97873 * 1 2 3 26 26 H 1.08001 * 120.11851 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47581 * 205.00330 * 6 5 4 28 28 H 1.09003 * 109.47175 * 325.00047 * 6 5 4 29 29 H 1.08997 * 109.47344 * 299.99915 * 7 6 5 30 30 H 1.08998 * 109.47651 * 60.00630 * 7 6 5 31 31 H 0.96992 * 119.99828 * 179.97438 * 11 10 8 32 32 H 1.07999 * 125.03114 * 179.97438 * 16 5 4 33 33 H 1.09002 * 109.47152 * 269.71987 * 21 20 19 34 34 H 1.09001 * 109.46980 * 149.72088 * 21 20 19 35 35 H 1.09004 * 109.47113 * 29.72068 * 21 20 19 36 36 H 1.07993 * 119.66475 * 180.23499 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1867 0.0000 4 6 3.5808 1.1874 -0.0005 5 6 4.5984 2.2411 -0.0012 6 6 4.3499 3.7274 -0.0020 7 6 4.1419 4.2104 1.4348 8 6 3.8927 5.6967 1.4340 9 1 3.8832 6.2421 0.5019 10 6 3.6758 6.3600 2.6231 11 7 3.6869 5.6958 3.7581 12 14 3.3677 8.2025 2.6221 13 1 1.9104 8.4605 2.4994 14 1 3.8691 8.7889 3.8909 15 1 4.0785 8.8226 1.4752 16 6 5.7944 1.6315 -0.0021 17 7 5.6261 0.2736 -0.0015 18 1 6.3454 -0.3771 -0.0016 19 6 4.2834 -0.0317 0.0051 20 6 3.5732 -1.2274 0.0007 21 6 4.3079 -2.5432 0.0010 22 6 2.1954 -1.2051 0.0019 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6424 2.1206 -0.0004 27 1 5.2085 4.2392 -0.4366 28 1 3.4596 3.9466 -0.5915 29 1 3.2832 3.6987 1.8694 30 1 5.0321 3.9913 2.0243 31 1 3.5346 6.1625 4.5946 32 1 6.7483 2.1379 -0.0031 33 1 4.4842 -2.8612 -1.0266 34 1 3.7084 -3.2940 0.5159 35 1 5.2626 -2.4261 0.5140 36 1 1.6458 -2.1347 0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:31 Heat of formation + Delta-G solvation = 8.050660 kcal Electronic energy + Delta-G solvation = -16656.261286 eV Core-core repulsion = 14103.667910 eV Total energy + Delta-G solvation = -2552.593376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.17706 -38.38094 -36.06909 -34.58295 -33.36045 -31.72524 -29.77214 -28.04522 -27.01019 -26.65268 -23.17550 -22.83747 -21.68761 -19.69861 -18.75410 -18.30429 -17.01975 -16.50830 -16.03819 -15.59362 -15.03294 -14.79688 -14.54869 -14.29214 -14.15306 -13.91599 -13.82086 -13.40778 -13.31985 -12.98971 -12.81919 -12.66762 -12.44819 -12.28906 -11.87151 -11.80721 -11.63030 -11.48184 -11.15659 -10.53936 -10.15762 -8.94878 -8.36085 -8.15391 -6.29717 0.24274 0.72977 1.40317 1.42564 1.53687 1.83136 2.33202 2.43084 2.95360 3.14966 3.83389 3.94529 4.04185 4.23618 4.39082 4.44673 4.54965 4.60667 4.71513 4.82138 4.86552 4.90118 4.94252 5.02956 5.08458 5.11811 5.20214 5.26885 5.38483 5.52520 5.60794 5.75999 5.81204 5.88233 5.90816 5.98939 6.26999 6.33016 6.82824 6.88228 7.39641 8.94518 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028071 B = 0.005461 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.213548 B = 5125.626458 C = 5748.311956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.127 4.127 5 C -0.192 4.192 6 C -0.026 4.026 7 C 0.042 3.958 8 C -0.542 4.542 9 H 0.062 0.938 10 C -0.002 4.002 11 N -0.936 5.936 12 Si 0.967 3.033 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.260 1.260 16 C 0.051 3.949 17 N -0.582 5.582 18 H 0.429 0.571 19 C 0.077 3.923 20 C -0.099 4.099 21 C -0.103 4.103 22 C -0.110 4.110 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.046 0.954 29 H -0.022 1.022 30 H -0.012 1.012 31 H 0.263 0.737 32 H 0.195 0.805 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -16.490 -9.149 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.124 4.124 4 C -0.132 4.132 5 C -0.198 4.198 6 C -0.064 4.064 7 C 0.005 3.995 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.791 3.209 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.184 1.184 16 C -0.075 4.075 17 N -0.187 5.187 18 H 0.269 0.731 19 C -0.030 4.030 20 C -0.102 4.102 21 C -0.160 4.160 22 C -0.129 4.129 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.065 0.935 29 H -0.004 1.004 30 H 0.006 0.994 31 H 0.071 0.929 32 H 0.212 0.788 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.754 -16.545 -8.982 18.841 hybrid contribution 0.114 1.113 0.535 1.240 sum 0.868 -15.432 -8.447 17.614 Atomic orbital electron populations 1.20738 0.89527 1.03325 1.02502 1.19668 0.97346 0.92339 1.02591 1.20291 0.92322 0.98187 1.01601 1.19455 0.93825 0.93243 1.06629 1.20711 0.92569 0.94977 1.11579 1.19797 1.00310 0.89005 0.97335 1.18864 0.94126 0.94379 0.92167 1.21742 1.48399 0.94657 0.93227 0.91937 1.26023 0.94978 1.03779 0.95102 1.70135 1.51039 1.38055 0.98423 0.85421 0.78645 0.78941 0.77873 1.19863 1.20674 1.18404 1.21913 0.99432 0.82439 1.03681 1.41524 1.05316 1.06539 1.65293 0.73139 1.18299 0.84319 0.94663 1.05737 1.19258 0.93682 0.92815 1.04446 1.20716 0.99748 0.92403 1.03114 1.20904 0.92484 0.97940 1.01593 0.91323 0.92124 0.89440 0.88156 0.91510 0.93508 1.00378 0.99351 0.92860 0.78821 0.90073 0.89671 0.91812 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 9.99 71.24 0.71 -1.74 16 2 C -0.12 -3.60 5.85 -20.10 -0.12 -3.72 16 3 C -0.11 -4.04 9.67 22.23 0.22 -3.82 16 4 C -0.13 -5.04 6.35 -20.20 -0.13 -5.17 16 5 C -0.19 -7.80 5.57 -18.63 -0.10 -7.91 16 6 C -0.03 -1.21 5.68 29.84 0.17 -1.04 16 7 C 0.04 2.39 4.96 29.85 0.15 2.53 16 8 C -0.54 -32.28 9.11 25.60 0.23 -32.05 16 9 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 10 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 11 N -0.94 -59.42 13.29 21.45 0.28 -59.14 16 12 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 16 C 0.05 1.65 11.73 83.00 0.97 2.62 16 17 N -0.58 -15.91 6.07 -187.61 -1.14 -17.05 16 18 H 0.43 7.98 8.87 -92.71 -0.82 7.16 16 19 C 0.08 2.50 6.95 39.03 0.27 2.77 16 20 C -0.10 -2.62 5.89 -19.77 -0.12 -2.74 16 21 C -0.10 -1.75 10.02 71.24 0.71 -1.03 16 22 C -0.11 -2.86 9.32 22.30 0.21 -2.65 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16 25 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 26 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.19 4.93 8.06 -2.91 -0.02 4.90 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.06 0.98 7.99 -2.38 -0.02 0.96 16 36 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -74.34 306.94 5.05 -69.28 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.24 Total: 12.93 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.64 Total: -53.56 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -0.85 Total: -76.19 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.34 5.05 -69.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.333 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds