Wall clock time and date at job start Mon Mar 30 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37998 * 120.05091 * 2 1 4 4 C 1.38894 * 120.70089 * 180.02562 * 3 2 1 5 5 C 1.36472 * 120.58941 * 359.97438 * 4 3 2 6 6 C 1.40446 * 119.80198 * 0.02562 * 5 4 3 7 7 C 1.40937 * 133.09465 * 179.97438 * 6 5 4 8 8 C 1.39124 * 107.50000 * 180.02562 * 7 6 5 9 9 C 1.39924 * 125.69495 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00050 * 179.97438 * 9 8 7 11 11 C 1.40188 * 119.99460 * 359.96757 * 9 8 7 12 12 N 1.30745 * 120.00618 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99486 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47023 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46684 * 120.00180 * 13 11 9 16 16 H 1.48498 * 109.47207 * 240.00099 * 13 11 9 17 17 N 1.38315 * 108.61352 * 359.97438 * 8 7 6 18 18 C 1.46501 * 125.60027 * 179.97438 * 17 8 7 19 19 C 1.53004 * 109.47217 * 304.46928 * 18 17 8 20 20 C 1.52994 * 109.47317 * 64.47378 * 18 17 8 21 21 C 1.38047 * 108.79831 * 0.23236 * 17 8 7 22 22 H 1.09001 * 109.47420 * 97.99255 * 1 2 3 23 23 H 1.08997 * 109.47221 * 217.99266 * 1 2 3 24 24 H 1.09002 * 109.47275 * 337.99746 * 1 2 3 25 25 H 1.08007 * 119.65440 * 0.02562 * 3 2 1 26 26 H 1.07996 * 119.71147 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.09852 * 180.02562 * 5 4 3 28 28 H 1.07998 * 126.24988 * 0.05695 * 7 6 5 29 29 H 0.96995 * 120.00152 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.46912 * 184.47313 * 18 17 8 31 31 H 1.08998 * 109.47403 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.46629 * 59.99896 * 19 18 17 33 33 H 1.09000 * 109.47458 * 300.00636 * 19 18 17 34 34 H 1.08999 * 109.47076 * 299.99835 * 20 18 17 35 35 H 1.09000 * 109.47448 * 59.99913 * 20 18 17 36 36 H 1.09008 * 109.47121 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1945 0.0000 4 6 3.5869 1.2102 -0.0005 5 6 4.2947 0.0434 -0.0005 6 6 3.6147 -1.1855 -0.0006 7 6 4.0490 -2.5263 -0.0010 8 6 2.9156 -3.3331 -0.0014 9 6 2.9095 -4.7323 -0.0014 10 1 1.9719 -5.2683 -0.0012 11 6 4.1206 -5.4384 -0.0017 12 7 5.2557 -4.7896 -0.0015 13 14 4.1125 -7.3065 -0.0024 14 1 2.7103 -7.7954 -0.0032 15 1 4.8104 -7.8039 -1.2152 16 1 4.8104 -7.8050 1.2099 17 7 1.7957 -2.5213 -0.0005 18 6 0.4061 -2.9852 -0.0011 19 6 0.1809 -3.9198 -1.1914 20 6 0.1191 -3.7377 1.2997 21 6 2.2026 -1.2021 -0.0049 22 1 -0.3634 -0.1429 -1.0177 23 1 -0.3633 -0.8099 0.6326 24 1 -0.3634 0.9528 0.3850 25 1 1.6532 2.1271 0.0004 26 1 4.1115 2.1542 -0.0001 27 1 5.3745 0.0649 -0.0005 28 1 5.0743 -2.8654 -0.0006 29 1 6.0936 -5.2782 -0.0013 30 1 -0.2629 -2.1283 -0.0803 31 1 -0.8531 -4.2646 -1.1921 32 1 0.8500 -4.7766 -1.1121 33 1 0.3854 -3.3837 -2.1181 34 1 0.7881 -4.5945 1.3790 35 1 0.2795 -3.0719 2.1477 36 1 -0.9148 -4.0832 1.2991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261084250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:47 Heat of formation + Delta-G solvation = 43.510703 kcal Electronic energy + Delta-G solvation = -17745.961394 eV Core-core repulsion = 15194.905681 eV Total energy + Delta-G solvation = -2551.055713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00705 -36.41952 -34.44299 -33.27977 -31.69235 -28.57612 -28.07611 -26.69198 -25.77879 -25.05373 -21.31943 -20.88382 -19.94344 -18.27142 -16.92079 -15.91361 -15.39238 -14.48673 -14.03195 -13.91514 -13.58534 -13.33851 -12.78346 -12.69750 -12.24697 -12.10981 -12.00063 -11.63528 -11.59454 -11.39430 -11.36832 -11.03884 -10.83503 -10.68672 -10.44795 -10.09339 -10.05717 -9.54679 -9.35940 -9.32756 -8.15440 -7.01226 -6.68609 -6.25504 -4.34316 2.34613 2.84600 2.99638 3.00405 3.04281 3.78714 4.10143 4.16404 5.03400 5.31341 5.39802 5.61795 5.66172 5.69048 5.77770 5.97057 6.01481 6.09843 6.12460 6.20215 6.25836 6.34079 6.36361 6.53074 6.62212 6.76278 6.89907 6.98044 7.05921 7.12037 7.42156 7.67401 7.71519 7.83987 7.93498 8.07389 8.38534 8.71258 8.80265 9.03080 9.21763 10.15046 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.009148 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.202032 B = 3060.174600 C = 3985.134104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.181 4.181 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.044 4.044 7 C -0.327 4.327 8 C 0.268 3.732 9 C -0.441 4.441 10 H 0.085 0.915 11 C 0.071 3.929 12 N -0.778 5.778 13 Si 0.921 3.079 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.503 5.503 18 C 0.133 3.867 19 C -0.172 4.172 20 C -0.166 4.166 21 C 0.045 3.955 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.279 0.721 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 0.817 0.053 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.049 4.049 7 C -0.350 4.350 8 C 0.164 3.836 9 C -0.474 4.474 10 H 0.103 0.897 11 C -0.148 4.148 12 N -0.403 5.403 13 Si 0.745 3.255 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.197 1.197 17 N -0.194 5.194 18 C 0.030 3.970 19 C -0.229 4.229 20 C -0.224 4.224 21 C -0.058 4.058 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.181 0.819 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.637 0.654 0.054 6.669 hybrid contribution 0.048 -0.718 -0.012 0.720 sum -6.589 -0.064 0.043 6.589 Atomic orbital electron populations 1.20854 0.93622 1.01285 1.00848 1.18566 0.93612 0.91033 1.06177 1.20088 0.93803 0.94990 1.11115 1.20171 0.93846 0.96600 1.05158 1.20114 0.97960 0.91292 1.06444 1.18521 0.91566 0.94566 1.00284 1.21790 0.99520 0.87946 1.25760 1.18090 0.82908 0.90489 0.92154 1.18891 0.93787 0.89220 1.45505 0.89749 1.25805 0.94745 1.01232 0.93061 1.69728 0.98709 1.37171 1.34687 0.86051 0.79513 0.81252 0.78691 1.18555 1.19751 1.19749 1.44346 1.04338 1.03565 1.67112 1.21247 0.82728 0.97612 0.95416 1.22329 1.01404 1.01498 0.97698 1.22226 1.01144 1.01920 0.97131 1.18026 0.93807 0.84089 1.09867 0.92620 0.92055 0.92563 0.88384 0.88561 0.88231 0.81950 0.90976 0.89072 0.92645 0.89710 0.92820 0.90504 0.92851 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.64 36.01 0.31 -1.54 16 2 C -0.09 -1.92 5.89 -104.47 -0.62 -2.54 16 3 C -0.18 -3.67 9.65 -39.43 -0.38 -4.05 16 4 C -0.14 -2.87 9.97 -39.98 -0.40 -3.27 16 5 C -0.14 -3.23 10.08 -39.39 -0.40 -3.63 16 6 C -0.04 -1.15 6.14 -106.91 -0.66 -1.80 16 7 C -0.33 -8.99 9.80 -38.23 -0.37 -9.36 16 8 C 0.27 6.97 6.23 -83.98 -0.52 6.45 16 9 C -0.44 -10.89 7.40 -38.22 -0.28 -11.17 16 10 H 0.08 1.93 4.35 -52.49 -0.23 1.70 16 11 C 0.07 1.69 5.50 -17.28 -0.10 1.60 16 12 N -0.78 -19.53 10.18 55.56 0.57 -18.97 16 13 Si 0.92 17.86 29.56 -169.99 -5.03 12.83 16 14 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 N -0.50 -11.76 2.70 -104.47 -0.28 -12.04 16 18 C 0.13 2.50 3.09 -67.93 -0.21 2.29 16 19 C -0.17 -2.99 9.11 37.16 0.34 -2.65 16 20 C -0.17 -2.86 9.24 37.15 0.34 -2.52 16 21 C 0.05 1.09 6.74 -83.69 -0.56 0.53 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.00 5.70 -51.93 -0.30 0.71 16 24 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 25 H 0.10 1.71 8.04 -52.48 -0.42 1.29 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.16 4.64 5.58 -52.49 -0.29 4.35 16 29 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 30 H 0.09 1.57 4.10 -51.93 -0.21 1.36 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.62 4.99 -51.93 -0.26 1.36 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.45 5.96 -51.93 -0.31 1.14 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 283.10 15.07 4.27 4.27 Total: -1.00 -27.73 283.10 -8.51 -36.24 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.53 Total: 9.32 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -3.51 Total: -31.66 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.28 Total: -31.01 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.73 -8.51 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.753 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds